code stringlengths 3 6.57k |
|---|
self._pre_upload(folder) |
self.refresh() |
self.get_dataset(res[0]['id']) |
upload_from_galaxy_fs(self, paths, folder=None, link_data_only=None, **kwargs) |
self._pre_upload(folder) |
isinstance(paths, str) |
join(paths) |
RuntimeError('upload_from_galaxy_filesystem: no reply') |
isinstance(res, Sequence) |
self.get_dataset(ds_info['id']) |
self.refresh() |
copy_from_dataset(self, hda, folder=None, message='') |
self._pre_upload(folder) |
self.refresh() |
self.get_dataset(res['library_dataset_id']) |
create_folder(self, name, description=None, base_folder=None) |
self.refresh() |
self.get_folder(res[0]['id']) |
get_folder(self, f_id) |
self.gi.gi.libraries.show_folder(self.id, f_id) |
Folder(f_dict, self, gi=self.gi) |
root_folder(self) |
self.get_folder(self.gi.gi.libraries._get_root_folder_id(self.id) |
Folder(Wrapper) |
__init__(self, f_dict, container, gi=None) |
super() |
__init__(f_dict, gi=gi) |
object.__setattr__(self, 'container', container) |
parent(self) |
self._get_parent() |
_get_parent(self) |
self.container.get_folder(parent_id) |
refresh(self) |
self.gi.gi.libraries.show_folder(self.container.id, self.id) |
self.__init__(f_dict, self.container, gi=self.gi) |
Tool(Wrapper) |
tool (see below) |
the (largely undocumented) |
inputs.items() |
isinstance(v, Dataset) |
self.gi.gi.tools.run_tool(history.id, self.id, inputs) |
history.get_dataset(_['id']) |
self.gi._wait_datasets(outputs, polling_interval=polling_interval) |
Job(Wrapper) |
DatasetContainerPreview(Wrapper) |
container (history and library) |
LibraryPreview(DatasetContainerPreview) |
HistoryPreview(DatasetContainerPreview) |
WorkflowPreview(Wrapper) |
InvocationPreview(Wrapper) |
JobPreview(Wrapper) |
main() |
get_positive_int() |
get_positive_int() |
int(input("Enter a positive number: ") |
main() |
BrewViewTests(BrewlogTests) |
pytest.fixture(autouse=True) |
set_up(self, user_factory, brewery_factory) |
pytest.mark.usefixtures('client_class') |
TestBrewDetailsView(BrewViewTests) |
url(self, brew) |
url_for('brew.details', brew_id=brew.id) |
test_get_404(self) |
self.client.get(url_for('brew.details', brew_id=666) |
test_get_no_access_hidden_brewery(self, brew_factory) |
brew_factory(brewery=self.hidden_brewery, name='hb1') |
self.login(self.public_user.email) |
self.client.get(self.url(brew) |
test_get_no_access_hidden_brew(self, brew_factory) |
self.login(self.hidden_user.email) |
self.client.get(self.url(brew) |
test_post_anon(self, brew_factory) |
self.client.post(self.url(brew) |
test_post_non_brewer(self, brew_factory) |
self.login(self.hidden_user.email) |
self.client.post(self.url(brew) |
test_post_data_ok(self, brew_factory) |
self.login(self.public_user.email) |
self.client.post(self.url(brew) |
Brew.query.get(brew.id) |
test_post_data_missing(self, brew_factory) |
brew_factory(brewery=self.public_brewery, name='pb1', code='xxx') |
self.login(self.public_user.email) |
self.client.post(self.url(brew) |
test_state_form_present(self, brew_factory) |
datetime.date(1992, 12, 4) |
datetime.date(1993, 1, 12) |
datetime.date(1993, 3, 8) |
self.login(self.public_user.email) |
self.client.get(self.url(brew) |
url_for('brew.chgstate', brew_id=brew.id) |
test_attenuation_display_none(self, brew_factory) |
brew_factory(brewery=self.public_brewery, name='pb1') |
self.login(self.public_user.email) |
self.client.get(self.url(brew) |
pytest.mark.usefixtures('client_class') |
TestBrewDetailsNavigation(BrewViewTests) |
url(self, brew) |
url_for('brew.details', brew_id=brew.id) |
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