code stringlengths 3 6.57k |
|---|
RuntimeError(msg) |
check_wavepadding(self, nids='good', npad=2) |
print('Checking spike waveform padding') |
sorted(self.neurons) |
shape (nchans, npad) |
np.diff(l, axis=1) |
all() |
np.diff(r, axis=1) |
all() |
if (wd[:, 0] == 0) |
all() |
if (wd[:, -1] == 0) |
all() |
RuntimeError(msg) |
check_contiguous_nids(self) |
contiguous (no gaps) |
print('Checking that neuron IDs are contiguous') |
np.array(list(self.neurons) |
nids.sort() |
if (np.diff(nids) |
any() |
RuntimeError('Neuron IDs are not contiguous, renumber all and try again') |
exportptcsfiles(self, basepath, sortpath, user='', notes='') |
self.check_ISIs() |
self.check_wavealign() |
self.check_wavepadding() |
self.check_contiguous_nids() |
str(datetime.datetime.now() |
exportdt.split('.') |
self.stream.is_multi() |
print('Exporting "good" clusters to:') |
zip(streams, tranges) |
intround(dt) |
exportptcsfile(self, stream, basepath, dt, exportdt, sortpath, user='', notes='') |
us (spike times are stored as int64 us in .ptcs) |
sorted(self.good) |
spikets.sort() |
spikets.searchsorted([stream.t0, stream.t1]) |
len(spikets) |
PTCSNeuronRecord(neuron, spikets, nsamplebytes, descr='') |
nrecs.append(nrec) |
len(spikets) |
len(nrecs) |
os.path.join(basepath, stream.srcfnameroot) |
os.mkdir(path) |
os.path.join(path, fname) |
open(fullfname, 'wb') |
header.write(f) |
nrec.write(f) |
print(fullfname) |
exportcsv(self, fname) |
time (s) |
sorted(self.good) |
sids.append(neuron.sids) |
chans.append(np.tile(neuron.chan, neuron.nspikes) |
np.hstack(sids) |
np.hstack(chans) |
np.column_stack([tsecs, nids, chans]) |
print('Exporting (tsec, nid, chan) |
np.savetxt(fname, data, fmt='%.6f, %d, %d') |
exporttschid(self, basepath) |
int64 (timestamp, channel, neuron id) |
NotImplementedError('Needs to be redone to work with multiple streams') |
str(datetime.datetime.now() |
dt.split('.') |
dt.replace(' ', '_') |
dt.replace(':', '.') |
srffnameroot.replace(' ', '_') |
np.empty((len(spikes) |
tschid.tofile(os.path.join(path, tschidfname) |
print(tschidfname) |
exportdin(self, basepath) |
din(s) |
file(s) |
self.stream.is_multi() |
print('Exporting DIN(s) |
len(svrecs) |
os.path.join(basepath, stream.srcfnameroot) |
os.mkdir(path) |
svrecs.astype(dinfiledtype) |
svrecs.view(np.int64) |
reshape(-1, 2) |
recordings (<= ptc15) |
svrects.searchsorted(dsprects) |
np.split(svrecs, svalrecis) |
len(dins) |
len(dsprecs) |
enumerate(dins) |
len(dins) |
len(dins) |
os.path.join(path, dinfname) |
din.tofile(fullfname) |
print(fullfname) |
exporttextheader(self, basepath) |
header(s) |
file(s) |
self.stream.is_multi() |
print('Exporting text header(s) |
len(dsprecs) |
os.path.join(basepath, stream.srcfnameroot) |
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