chemistry-knowledge / DATA_DICTIONARY.md
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Release ChemBricks curated knowledge 2026-09-17.1
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Data dictionary

Every JSONL line is one JSON object. Three named Hugging Face configurations use the same unsplit corpus designation.

records

One complete eligible investigation per row. The useful reading columns are question, beginner_question, answer, trace_markdown and limitations. The beginner question is an existing source paraphrase, not a new claim.

Columns Meaning
record_id, created_at Stable source identity and original creation time
family, tier, template_id Source question taxonomy and template
paraphrases Recorded alternative phrasings; not independent examples
molecule_smiles Canonical structures in the record registry
claims_json, molecules_json Complete structured claims and molecule registry, encoded as JSON strings
interpretations_json, derived_questions_json Source interpretations and proposed follow-ups
source_confidence_json Computed confidence projection for every claim, including dependencies and warnings
prediction_timing Whether recorded pre-call writing order was verified, unverified, or not applicable under the source policy
validation_gates_json Original G1-G11 statuses
referee_score, referee_model Recorded independent model review; null or empty when not supplied
builder_review_recorded Whether a matching building-agent trace-review receipt exists
source_model Recorded question-writer model
source_capture_id SHA-256 of the original complete tools.jsonl; a grouping key
source_record_sha256, source_trace_sha256 Hashes of the original source files
ledger_entry, ledger_line Commitment in provenance/source-ledger.jsonl
related_record_ids Explicit supersedes and derived_from links
tags Propagated confidence, method and timing qualifications
claims_count, tool_calls_count Counts for this record and its retained non-protocol capture
creator, license ChemBricks and mit for this release

claims

One eligible claim per row. id is record_id:claim_id. Shared fields have the meanings above.

Columns Meaning
statement, claim_type, property Original claim wording, category and property identifier
value, value_json, unit Numeric convenience value, lossless original JSON value, and source unit
verdict Always passed in this subset
tool, model, trust_factor Actual recorded method; nullable trust when unavailable
conditions_json Source phase, geometry, solvent, temperature and state
claim_json Complete original claim including its evidence and checks
source_confidence_json Dependency-aware confidence for this claim
full_record_eligible Whether the complete source investigation also appears in records
limitations The source Limitations section, retained even for a claim-only source

A null scalar value can be valid for a directional ranking or a qualitative claim. value_json is authoritative for the original type. Null does not mean zero. Trust factors and screening outputs retain their documented limitations.

evidence

One public tool-call row per pair of source_capture_id and request_id.

Columns Meaning
tool, status, timestamp, duration_ms Recorded execution information
args_json, response_json Exact chemical arguments and response, represented as JSON strings
source_line Original line number; gaps reflect omitted protocol rows
public_row_json Complete retained public row with client request metadata removed
source_row_sha256 Original row hash before public-copy metadata removal
row_sha256 Hash of the public row excluding its own sha256 field
omitted_metadata_fields Request-envelope metadata paths removed from the public row

Join a claim to evidence using both its source capture ID and each evidence request ID. Claim JSON paths start at the full decoded response. JSON-encoded text content may need decoding while traversing a path.

The public-row hash uses SHA-256 over JSON with sorted keys, compact separators, UTF-8 characters unescaped, no NaN, and the sha256 key omitted. The original response metadata is preserved, including request IDs. The source and public row hashes can differ without any chemical change.

Supporting files

  • schemas/*.schema.json: exact public row schemas.
  • provenance/records.jsonl: source hashes, original gate states, review receipts and historical license labels.
  • provenance/selection.jsonl: eligible and excluded claim IDs, with reasons propagated through dependencies.
  • provenance/exclusions.json: record-level exclusions.
  • provenance/source-ledger.jsonl: frozen ledger prefix, including commitments to sources outside the selected release.
  • manifest.json: counts, source state, policies, transformations and file hashes.
  • SHA256SUMS: checksums of the distributable package.

The package verifier checks internal integrity and evidence links. Source-file hashes are commitments to the original private corpus; the package does not contain every original source file required to reconstruct that corpus.