Datasets:
Modalities:
Tabular
Formats:
csv
Languages:
English
Size:
< 1K
Tags:
raman-spectroscopy
time-gated-raman
biotechnology
streptococcus-thermophilus
fermentation
batch-cultivation
License:
Update README.md
Browse files
README.md
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license: cc-by-4.0
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---
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license: cc-by-4.0
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tags:
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- raman-spectroscopy
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- time-gated-raman
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- biotechnology
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- streptococcus-thermophilus
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- fermentation
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- batch-cultivation
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- process-analytical-technology
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pretty_name: Time-Gated Raman Spectra of Streptococcus thermophilus Fermentations
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language:
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- en
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size_categories:
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- n<1K
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---
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# Dataset Card for Time-Gated Raman Spectra from Fermentations of Streptococcus thermophilus
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## Dataset Summary
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This dataset contains offline Raman spectra collected during batch cultivations of ***Streptococcus thermophilus***. Unlike conventional continuous-wave Raman, these measurements were captured using **Time-Gated Raman Spectroscopy**, which allows for the temporal separation of the Raman signal from background fluorescence.
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The dataset includes two distinct fermentation runs conducted in shake flasks over a 24-hour period, paired with reference analytical measurements (HPLC and spectrophotometry).
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---
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## Dataset Structure
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### Data Points
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Each entry consists of a Raman spectrum (intensity vs. Raman shift) paired with the following quantitative annotations:
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* **Lactose [g/L]:** Primary carbon source.
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* **Galactose [g/L]:** Metabolic byproduct.
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* **Lactate [g/L]:** Primary fermentation product.
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* **OD600:** Optical density at 600 nm (biomass concentration).
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### Preprocessing
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* **Status:** Raw.
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* **Note:** The spectra are provided in their raw format. No computational fluorescence rejection, baseline correction, or smoothing has been applied. The time-gating hardware provides the initial fluorescence suppression.
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---
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## Technical Specifications
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### Cultivation Parameters
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* **Organism:** *Streptococcus thermophilus*
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* **Cultivation Mode:** Batch
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* **Vessel:** Shake flask
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* **Duration:** ~24 hours
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### Measurement Setup
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* **Spectrometer:** Timegate PicoRaman (First Generation)
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* **Technology:** Time-Gated Raman Spectroscopy (pulsed laser)
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* **Sampling:** Offline samples taken throughout the fermentation.
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* **Reference Analytics:** * Metabolites measured via High-Performance Liquid Chromatography (HPLC).
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* Biomass measured via UV-Vis Spectrophotometry ($OD_{600}$).
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---
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## Dataset Sources
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- **Repository:** [https://huggingface.co/datasets/chlange/streptococcus_thermophilus_fermentation_timegate](https://huggingface.co/datasets/chlange/streptococcus_thermophilus_fermentation_timegate)
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- **Paper:** [Link to paper if available]
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---
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