| --- |
| pretty_name: "1M RNA-seq SRA Samples Annotations" |
| language: |
| - en |
| license: cc-by-4.0 |
| tags: |
| - biology |
| - rnaseq |
| - sra |
| - metadata |
| - annotations |
| - bioinformatics |
| task_categories: |
| - tabular-classification |
| - text-classification |
| --- |
| |
| # 1M RNAseq SRA samples annotations |
|
|
| - 800k_completed_metadata.csv: main metadata table for approximately 800k annotated RNA-seq/SRA samples. |
| - 800k_rnaseq_metappuccino_labels.db: SQLite database containing Metappuccino labels and associated structured metadata. |
| - manual_dics/: folder containing manual normalization and cross-column remapping dictionaries. |
| - FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv: maps raw biopsy_site values to normalized UBERON anatomical terms. |
| - FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv: maps raw organ values to normalized UBERON anatomical terms. |
| - FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv: maps raw disease values to normalized DOT/DOID disease terms. |
| - global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv: defines cross-column remapping rules for values found in the wrong metadata field. |
