|
|
|
|
|
|
|
|
|
|
|
import os |
|
|
import importlib |
|
|
import shutil |
|
|
import subprocess |
|
|
import sys |
|
|
|
|
|
try: |
|
|
import git |
|
|
import yaml |
|
|
from termcolor import colored |
|
|
import colorama |
|
|
colorama.init() |
|
|
except: |
|
|
print("Please ensure that conda env is activated and that git,") |
|
|
print("yaml, termcolor, and colorama are in conda_env.yaml") |
|
|
raise Exception |
|
|
|
|
|
ROOT = '..' |
|
|
|
|
|
spec = importlib.util.spec_from_file_location('gslab_make', |
|
|
os.path.join(ROOT, 'lib', 'gslab_make', '__init__.py')) |
|
|
gs = importlib.util.module_from_spec(spec) |
|
|
sys.modules['gslab_make'] = gs |
|
|
spec.loader.exec_module(gs) |
|
|
|
|
|
default_executables = gs.private.metadata.default_executables |
|
|
format_message = gs.private.utility.format_message |
|
|
|
|
|
|
|
|
|
|
|
def parse_yaml_files(config = '../config.yaml', config_user = '../config_user.yaml'): |
|
|
if not os.path.isfile(config_user): |
|
|
shutil.copy('config_user_template.yaml', config_user) |
|
|
|
|
|
config = yaml.load(open(config, 'rb'), Loader = yaml.Loader) |
|
|
config_user = yaml.load(open(config_user, 'rb'), Loader = yaml.Loader) |
|
|
|
|
|
return(config, config_user) |
|
|
|
|
|
|
|
|
def check_executable(executable): |
|
|
if os.name == 'posix': |
|
|
try: |
|
|
subprocess.check_output('which %s' % executable, shell = True) |
|
|
except: |
|
|
error_message = "Please set up '%s' for command-line use on your system" % executable |
|
|
error_message = format_message(error_message) |
|
|
raise gs.private.exceptionclasses.ColoredError(error_message) |
|
|
if os.name == 'nt': |
|
|
try: |
|
|
subprocess.check_output('where %s' % executable, shell = True) |
|
|
except: |
|
|
try: |
|
|
subprocess.check_output('dir %s' % executable, shell = True) |
|
|
except: |
|
|
error_message = "Please set up `%s` for command-line use on your system" % executable |
|
|
error_message = format_message(error_message) |
|
|
raise gs.private.exceptionclasses.ColoredError(error_message, '') |
|
|
|
|
|
|
|
|
def check_software(config, config_user): |
|
|
default_executables[os.name].update(config_user['local']['executables']) |
|
|
|
|
|
if config['git_lfs_required']: |
|
|
check_executable(default_executables[os.name]['git-lfs']) |
|
|
|
|
|
software_list = config['software_required'] |
|
|
software_list = {key:value for (key, value) in software_list.items() if value == True} |
|
|
software_list = {key:default_executables[os.name][key] for (key, value) in software_list.items()} |
|
|
|
|
|
for software in software_list.values(): |
|
|
check_executable(software) |
|
|
|
|
|
|
|
|
def check_external_paths(config_user): |
|
|
if config_user['external']: |
|
|
for path in config_user['external'].values(): |
|
|
if not os.path.exists(path): |
|
|
error_message = 'ERROR! Path `%s` listed in `config_user.yaml` but cannot be found.' % path |
|
|
error_message = format_message(error_message) |
|
|
raise gs.private.exceptionclasses.ColoredError(error_message) |
|
|
|
|
|
|
|
|
def configuration(): |
|
|
(config, config_user) = parse_yaml_files() |
|
|
check_software(config, config_user) |
|
|
check_external_paths(config_user) |
|
|
message = format_message('SUCCESS! Setup complete.') |
|
|
print(colored(message, 'green')) |
|
|
|
|
|
|
|
|
|
|
|
configuration() |
