repository_name stringlengths 5 67 | func_path_in_repository stringlengths 4 234 | func_name stringlengths 0 314 | whole_func_string stringlengths 52 3.87M | language stringclasses 6
values | func_code_string stringlengths 52 3.87M | func_documentation_string stringlengths 1 47.2k | func_code_url stringlengths 85 339 |
|---|---|---|---|---|---|---|---|
astropy/astropy-helpers | astropy_helpers/utils.py | extends_doc | def extends_doc(extended_func):
"""
A function decorator for use when wrapping an existing function but adding
additional functionality. This copies the docstring from the original
function, and appends to it (along with a newline) the docstring of the
wrapper function.
Examples
--------
... | python | def extends_doc(extended_func):
"""
A function decorator for use when wrapping an existing function but adding
additional functionality. This copies the docstring from the original
function, and appends to it (along with a newline) the docstring of the
wrapper function.
Examples
--------
... | A function decorator for use when wrapping an existing function but adding
additional functionality. This copies the docstring from the original
function, and appends to it (along with a newline) the docstring of the
wrapper function.
Examples
--------
>>> def foo():
... '''He... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/utils.py#L264-L294 |
astropy/astropy-helpers | astropy_helpers/utils.py | find_data_files | def find_data_files(package, pattern):
"""
Include files matching ``pattern`` inside ``package``.
Parameters
----------
package : str
The package inside which to look for data files
pattern : str
Pattern (glob-style) to match for the data files (e.g. ``*.dat``).
This sup... | python | def find_data_files(package, pattern):
"""
Include files matching ``pattern`` inside ``package``.
Parameters
----------
package : str
The package inside which to look for data files
pattern : str
Pattern (glob-style) to match for the data files (e.g. ``*.dat``).
This sup... | Include files matching ``pattern`` inside ``package``.
Parameters
----------
package : str
The package inside which to look for data files
pattern : str
Pattern (glob-style) to match for the data files (e.g. ``*.dat``).
This supports the``**``recursive syntax. For example, ``**/... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/utils.py#L297-L312 |
astropy/astropy-helpers | astropy_helpers/version_helpers.py | _version_split | def _version_split(version):
"""
Split a version string into major, minor, and bugfix numbers. If any of
those numbers are missing the default is zero. Any pre/post release
modifiers are ignored.
Examples
========
>>> _version_split('1.2.3')
(1, 2, 3)
>>> _version_split('1.2')
... | python | def _version_split(version):
"""
Split a version string into major, minor, and bugfix numbers. If any of
those numbers are missing the default is zero. Any pre/post release
modifiers are ignored.
Examples
========
>>> _version_split('1.2.3')
(1, 2, 3)
>>> _version_split('1.2')
... | Split a version string into major, minor, and bugfix numbers. If any of
those numbers are missing the default is zero. Any pre/post release
modifiers are ignored.
Examples
========
>>> _version_split('1.2.3')
(1, 2, 3)
>>> _version_split('1.2')
(1, 2, 0)
>>> _version_split('1.2rc1... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/version_helpers.py#L43-L85 |
astropy/astropy-helpers | astropy_helpers/version_helpers.py | _generate_git_header | def _generate_git_header(packagename, version, githash):
"""
Generates a header to the version.py module that includes utilities for
probing the git repository for updates (to the current git hash, etc.)
These utilities should only be available in development versions, and not
in release builds.
... | python | def _generate_git_header(packagename, version, githash):
"""
Generates a header to the version.py module that includes utilities for
probing the git repository for updates (to the current git hash, etc.)
These utilities should only be available in development versions, and not
in release builds.
... | Generates a header to the version.py module that includes utilities for
probing the git repository for updates (to the current git hash, etc.)
These utilities should only be available in development versions, and not
in release builds.
If this fails for any reason an empty string is returned. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/version_helpers.py#L182-L215 |
astropy/astropy-helpers | astropy_helpers/version_helpers.py | generate_version_py | def generate_version_py(packagename=None, version=None, release=None, debug=None,
uses_git=None, srcdir='.'):
"""
Generate a version.py file in the package with version information, and
update developer version strings.
This function should normally be called without any argumen... | python | def generate_version_py(packagename=None, version=None, release=None, debug=None,
uses_git=None, srcdir='.'):
"""
Generate a version.py file in the package with version information, and
update developer version strings.
This function should normally be called without any argumen... | Generate a version.py file in the package with version information, and
update developer version strings.
This function should normally be called without any arguments. In this case
the package name and version is read in from the ``setup.cfg`` file (from
the ``name`` or ``package_name`` entry and the ... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/version_helpers.py#L218-L349 |
astropy/astropy-helpers | astropy_helpers/version_helpers.py | get_pkg_version_module | def get_pkg_version_module(packagename, fromlist=None):
"""Returns the package's .version module generated by
`astropy_helpers.version_helpers.generate_version_py`. Raises an
ImportError if the version module is not found.
If ``fromlist`` is an iterable, return a tuple of the members of the
versio... | python | def get_pkg_version_module(packagename, fromlist=None):
"""Returns the package's .version module generated by
`astropy_helpers.version_helpers.generate_version_py`. Raises an
ImportError if the version module is not found.
If ``fromlist`` is an iterable, return a tuple of the members of the
versio... | Returns the package's .version module generated by
`astropy_helpers.version_helpers.generate_version_py`. Raises an
ImportError if the version module is not found.
If ``fromlist`` is an iterable, return a tuple of the members of the
version module corresponding to the member names given in ``fromlist`... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/version_helpers.py#L352-L367 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | setup | def setup(**kwargs):
"""
A wrapper around setuptools' setup() function that automatically sets up
custom commands, generates a version file, and customizes the setup process
via the ``setup_package.py`` files.
"""
# DEPRECATED: store the package name in a built-in variable so it's easy
# to... | python | def setup(**kwargs):
"""
A wrapper around setuptools' setup() function that automatically sets up
custom commands, generates a version file, and customizes the setup process
via the ``setup_package.py`` files.
"""
# DEPRECATED: store the package name in a built-in variable so it's easy
# to... | A wrapper around setuptools' setup() function that automatically sets up
custom commands, generates a version file, and customizes the setup process
via the ``setup_package.py`` files. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L72-L104 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_debug_option | def get_debug_option(packagename):
""" Determines if the build is in debug mode.
Returns
-------
debug : bool
True if the current build was started with the debug option, False
otherwise.
"""
try:
current_debug = get_pkg_version_module(packagename,
... | python | def get_debug_option(packagename):
""" Determines if the build is in debug mode.
Returns
-------
debug : bool
True if the current build was started with the debug option, False
otherwise.
"""
try:
current_debug = get_pkg_version_module(packagename,
... | Determines if the build is in debug mode.
Returns
-------
debug : bool
True if the current build was started with the debug option, False
otherwise. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L114-L143 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | register_commands | def register_commands(package=None, version=None, release=None, srcdir='.'):
"""
This function generates a dictionary containing customized commands that
can then be passed to the ``cmdclass`` argument in ``setup()``.
"""
if package is not None:
warnings.warn('The package argument to genera... | python | def register_commands(package=None, version=None, release=None, srcdir='.'):
"""
This function generates a dictionary containing customized commands that
can then be passed to the ``cmdclass`` argument in ``setup()``.
"""
if package is not None:
warnings.warn('The package argument to genera... | This function generates a dictionary containing customized commands that
can then be passed to the ``cmdclass`` argument in ``setup()``. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L156-L241 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | add_command_hooks | def add_command_hooks(commands, srcdir='.'):
"""
Look through setup_package.py modules for functions with names like
``pre_<command_name>_hook`` and ``post_<command_name>_hook`` where
``<command_name>`` is the name of a ``setup.py`` command (e.g. build_ext).
If either hook is present this adds a wr... | python | def add_command_hooks(commands, srcdir='.'):
"""
Look through setup_package.py modules for functions with names like
``pre_<command_name>_hook`` and ``post_<command_name>_hook`` where
``<command_name>`` is the name of a ``setup.py`` command (e.g. build_ext).
If either hook is present this adds a wr... | Look through setup_package.py modules for functions with names like
``pre_<command_name>_hook`` and ``post_<command_name>_hook`` where
``<command_name>`` is the name of a ``setup.py`` command (e.g. build_ext).
If either hook is present this adds a wrapped version of that command to
the passed in ``comm... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L244-L288 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | generate_hooked_command | def generate_hooked_command(cmd_name, cmd_cls, hooks):
"""
Returns a generated subclass of ``cmd_cls`` that runs the pre- and
post-command hooks for that command before and after the ``cmd_cls.run``
method.
"""
def run(self, orig_run=cmd_cls.run):
self.run_command_hooks('pre_hooks')
... | python | def generate_hooked_command(cmd_name, cmd_cls, hooks):
"""
Returns a generated subclass of ``cmd_cls`` that runs the pre- and
post-command hooks for that command before and after the ``cmd_cls.run``
method.
"""
def run(self, orig_run=cmd_cls.run):
self.run_command_hooks('pre_hooks')
... | Returns a generated subclass of ``cmd_cls`` that runs the pre- and
post-command hooks for that command before and after the ``cmd_cls.run``
method. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L291-L306 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | run_command_hooks | def run_command_hooks(cmd_obj, hook_kind):
"""Run hooks registered for that command and phase.
*cmd_obj* is a finalized command object; *hook_kind* is either
'pre_hook' or 'post_hook'.
"""
hooks = getattr(cmd_obj, hook_kind, None)
if not hooks:
return
for modname, hook in hooks:
... | python | def run_command_hooks(cmd_obj, hook_kind):
"""Run hooks registered for that command and phase.
*cmd_obj* is a finalized command object; *hook_kind* is either
'pre_hook' or 'post_hook'.
"""
hooks = getattr(cmd_obj, hook_kind, None)
if not hooks:
return
for modname, hook in hooks:
... | Run hooks registered for that command and phase.
*cmd_obj* is a finalized command object; *hook_kind* is either
'pre_hook' or 'post_hook'. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L309-L343 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | update_package_files | def update_package_files(srcdir, extensions, package_data, packagenames,
package_dirs):
"""
This function is deprecated and maintained for backward compatibility
with affiliated packages. Affiliated packages should update their
setup.py to use `get_package_info` instead.
""... | python | def update_package_files(srcdir, extensions, package_data, packagenames,
package_dirs):
"""
This function is deprecated and maintained for backward compatibility
with affiliated packages. Affiliated packages should update their
setup.py to use `get_package_info` instead.
""... | This function is deprecated and maintained for backward compatibility
with affiliated packages. Affiliated packages should update their
setup.py to use `get_package_info` instead. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L357-L369 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_package_info | def get_package_info(srcdir='.', exclude=()):
"""
Collates all of the information for building all subpackages
and returns a dictionary of keyword arguments that can
be passed directly to `distutils.setup`.
The purpose of this function is to allow subpackages to update the
arguments to the pack... | python | def get_package_info(srcdir='.', exclude=()):
"""
Collates all of the information for building all subpackages
and returns a dictionary of keyword arguments that can
be passed directly to `distutils.setup`.
The purpose of this function is to allow subpackages to update the
arguments to the pack... | Collates all of the information for building all subpackages
and returns a dictionary of keyword arguments that can
be passed directly to `distutils.setup`.
The purpose of this function is to allow subpackages to update the
arguments to the package's ``setup()`` function in its setup.py
script, rat... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L372-L481 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | iter_setup_packages | def iter_setup_packages(srcdir, packages):
""" A generator that finds and imports all of the ``setup_package.py``
modules in the source packages.
Returns
-------
modgen : generator
A generator that yields (modname, mod), where `mod` is the module and
`modname` is the module name for... | python | def iter_setup_packages(srcdir, packages):
""" A generator that finds and imports all of the ``setup_package.py``
modules in the source packages.
Returns
-------
modgen : generator
A generator that yields (modname, mod), where `mod` is the module and
`modname` is the module name for... | A generator that finds and imports all of the ``setup_package.py``
modules in the source packages.
Returns
-------
modgen : generator
A generator that yields (modname, mod), where `mod` is the module and
`modname` is the module name for the ``setup_package.py`` modules. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L484-L505 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | iter_pyx_files | def iter_pyx_files(package_dir, package_name):
"""
A generator that yields Cython source files (ending in '.pyx') in the
source packages.
Returns
-------
pyxgen : generator
A generator that yields (extmod, fullfn) where `extmod` is the
full name of the module that the .pyx file ... | python | def iter_pyx_files(package_dir, package_name):
"""
A generator that yields Cython source files (ending in '.pyx') in the
source packages.
Returns
-------
pyxgen : generator
A generator that yields (extmod, fullfn) where `extmod` is the
full name of the module that the .pyx file ... | A generator that yields Cython source files (ending in '.pyx') in the
source packages.
Returns
-------
pyxgen : generator
A generator that yields (extmod, fullfn) where `extmod` is the
full name of the module that the .pyx file would live in based
on the source directory structu... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L508-L529 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | get_cython_extensions | def get_cython_extensions(srcdir, packages, prevextensions=tuple(),
extincludedirs=None):
"""
Looks for Cython files and generates Extensions if needed.
Parameters
----------
srcdir : str
Path to the root of the source directory to search.
prevextensions : list... | python | def get_cython_extensions(srcdir, packages, prevextensions=tuple(),
extincludedirs=None):
"""
Looks for Cython files and generates Extensions if needed.
Parameters
----------
srcdir : str
Path to the root of the source directory to search.
prevextensions : list... | Looks for Cython files and generates Extensions if needed.
Parameters
----------
srcdir : str
Path to the root of the source directory to search.
prevextensions : list of `~distutils.core.Extension` objects
The extensions that are already defined. Any .pyx files already here
wi... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L532-L579 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | pkg_config | def pkg_config(packages, default_libraries, executable='pkg-config'):
"""
Uses pkg-config to update a set of distutils Extension arguments
to include the flags necessary to link against the given packages.
If the pkg-config lookup fails, default_libraries is applied to
libraries.
Parameters
... | python | def pkg_config(packages, default_libraries, executable='pkg-config'):
"""
Uses pkg-config to update a set of distutils Extension arguments
to include the flags necessary to link against the given packages.
If the pkg-config lookup fails, default_libraries is applied to
libraries.
Parameters
... | Uses pkg-config to update a set of distutils Extension arguments
to include the flags necessary to link against the given packages.
If the pkg-config lookup fails, default_libraries is applied to
libraries.
Parameters
----------
packages : list of str
A list of pkg-config packages to l... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L602-L679 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | add_external_library | def add_external_library(library):
"""
Add a build option for selecting the internal or system copy of a library.
Parameters
----------
library : str
The name of the library. If the library is `foo`, the build
option will be called `--use-system-foo`.
"""
for command in ['... | python | def add_external_library(library):
"""
Add a build option for selecting the internal or system copy of a library.
Parameters
----------
library : str
The name of the library. If the library is `foo`, the build
option will be called `--use-system-foo`.
"""
for command in ['... | Add a build option for selecting the internal or system copy of a library.
Parameters
----------
library : str
The name of the library. If the library is `foo`, the build
option will be called `--use-system-foo`. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L682-L696 |
astropy/astropy-helpers | astropy_helpers/setup_helpers.py | find_packages | def find_packages(where='.', exclude=(), invalidate_cache=False):
"""
This version of ``find_packages`` caches previous results to speed up
subsequent calls. Use ``invalide_cache=True`` to ignore cached results
from previous ``find_packages`` calls, and repeat the package search.
"""
if exclud... | python | def find_packages(where='.', exclude=(), invalidate_cache=False):
"""
This version of ``find_packages`` caches previous results to speed up
subsequent calls. Use ``invalide_cache=True`` to ignore cached results
from previous ``find_packages`` calls, and repeat the package search.
"""
if exclud... | This version of ``find_packages`` caches previous results to speed up
subsequent calls. Use ``invalide_cache=True`` to ignore cached results
from previous ``find_packages`` calls, and repeat the package search. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/setup_helpers.py#L725-L749 |
astropy/astropy-helpers | astropy_helpers/commands/build_ext.py | should_build_with_cython | def should_build_with_cython(previous_cython_version, is_release):
"""
Returns the previously used Cython version (or 'unknown' if not
previously built) if Cython should be used to build extension modules from
pyx files.
"""
# Only build with Cython if, of course, Cython is installed, we're in ... | python | def should_build_with_cython(previous_cython_version, is_release):
"""
Returns the previously used Cython version (or 'unknown' if not
previously built) if Cython should be used to build extension modules from
pyx files.
"""
# Only build with Cython if, of course, Cython is installed, we're in ... | Returns the previously used Cython version (or 'unknown' if not
previously built) if Cython should be used to build extension modules from
pyx files. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/commands/build_ext.py#L15-L37 |
astropy/astropy-helpers | astropy_helpers/commands/build_ext.py | AstropyHelpersBuildExt._check_cython_sources | def _check_cython_sources(self, extension):
"""
Where relevant, make sure that the .c files associated with .pyx
modules are present (if building without Cython installed).
"""
# Determine the compiler we'll be using
if self.compiler is None:
compiler = get_d... | python | def _check_cython_sources(self, extension):
"""
Where relevant, make sure that the .c files associated with .pyx
modules are present (if building without Cython installed).
"""
# Determine the compiler we'll be using
if self.compiler is None:
compiler = get_d... | Where relevant, make sure that the .c files associated with .pyx
modules are present (if building without Cython installed). | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/commands/build_ext.py#L162-L206 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | _get_flag_value_from_var | def _get_flag_value_from_var(flag, var, delim=' '):
"""
Extract flags from an environment variable.
Parameters
----------
flag : str
The flag to extract, for example '-I' or '-L'
var : str
The environment variable to extract the flag from, e.g. CFLAGS or LDFLAGS.
delim : str... | python | def _get_flag_value_from_var(flag, var, delim=' '):
"""
Extract flags from an environment variable.
Parameters
----------
flag : str
The flag to extract, for example '-I' or '-L'
var : str
The environment variable to extract the flag from, e.g. CFLAGS or LDFLAGS.
delim : str... | Extract flags from an environment variable.
Parameters
----------
flag : str
The flag to extract, for example '-I' or '-L'
var : str
The environment variable to extract the flag from, e.g. CFLAGS or LDFLAGS.
delim : str, optional
The delimiter separating flags inside the env... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L52-L104 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | get_openmp_flags | def get_openmp_flags():
"""
Utility for returning compiler and linker flags possibly needed for
OpenMP support.
Returns
-------
result : `{'compiler_flags':<flags>, 'linker_flags':<flags>}`
Notes
-----
The flags returned are not tested for validity, use
`check_openmp_support(op... | python | def get_openmp_flags():
"""
Utility for returning compiler and linker flags possibly needed for
OpenMP support.
Returns
-------
result : `{'compiler_flags':<flags>, 'linker_flags':<flags>}`
Notes
-----
The flags returned are not tested for validity, use
`check_openmp_support(op... | Utility for returning compiler and linker flags possibly needed for
OpenMP support.
Returns
-------
result : `{'compiler_flags':<flags>, 'linker_flags':<flags>}`
Notes
-----
The flags returned are not tested for validity, use
`check_openmp_support(openmp_flags=get_openmp_flags())` to d... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L107-L141 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | check_openmp_support | def check_openmp_support(openmp_flags=None):
"""
Check whether OpenMP test code can be compiled and run.
Parameters
----------
openmp_flags : dict, optional
This should be a dictionary with keys ``compiler_flags`` and
``linker_flags`` giving the compiliation and linking flags respec... | python | def check_openmp_support(openmp_flags=None):
"""
Check whether OpenMP test code can be compiled and run.
Parameters
----------
openmp_flags : dict, optional
This should be a dictionary with keys ``compiler_flags`` and
``linker_flags`` giving the compiliation and linking flags respec... | Check whether OpenMP test code can be compiled and run.
Parameters
----------
openmp_flags : dict, optional
This should be a dictionary with keys ``compiler_flags`` and
``linker_flags`` giving the compiliation and linking flags respectively.
These are passed as `extra_postargs` to `... | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L144-L227 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | is_openmp_supported | def is_openmp_supported():
"""
Determine whether the build compiler has OpenMP support.
"""
log_threshold = log.set_threshold(log.FATAL)
ret = check_openmp_support()
log.set_threshold(log_threshold)
return ret | python | def is_openmp_supported():
"""
Determine whether the build compiler has OpenMP support.
"""
log_threshold = log.set_threshold(log.FATAL)
ret = check_openmp_support()
log.set_threshold(log_threshold)
return ret | Determine whether the build compiler has OpenMP support. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L230-L237 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | add_openmp_flags_if_available | def add_openmp_flags_if_available(extension):
"""
Add OpenMP compilation flags, if supported (if not a warning will be
printed to the console and no flags will be added.)
Returns `True` if the flags were added, `False` otherwise.
"""
if _ASTROPY_DISABLE_SETUP_WITH_OPENMP_:
log.info("Op... | python | def add_openmp_flags_if_available(extension):
"""
Add OpenMP compilation flags, if supported (if not a warning will be
printed to the console and no flags will be added.)
Returns `True` if the flags were added, `False` otherwise.
"""
if _ASTROPY_DISABLE_SETUP_WITH_OPENMP_:
log.info("Op... | Add OpenMP compilation flags, if supported (if not a warning will be
printed to the console and no flags will be added.)
Returns `True` if the flags were added, `False` otherwise. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L240-L265 |
astropy/astropy-helpers | astropy_helpers/openmp_helpers.py | generate_openmp_enabled_py | def generate_openmp_enabled_py(packagename, srcdir='.', disable_openmp=None):
"""
Generate ``package.openmp_enabled.is_openmp_enabled``, which can then be used
to determine, post build, whether the package was built with or without
OpenMP support.
"""
if packagename.lower() == 'astropy':
... | python | def generate_openmp_enabled_py(packagename, srcdir='.', disable_openmp=None):
"""
Generate ``package.openmp_enabled.is_openmp_enabled``, which can then be used
to determine, post build, whether the package was built with or without
OpenMP support.
"""
if packagename.lower() == 'astropy':
... | Generate ``package.openmp_enabled.is_openmp_enabled``, which can then be used
to determine, post build, whether the package was built with or without
OpenMP support. | https://github.com/astropy/astropy-helpers/blob/f5a27d3f84a98ea0eebb85e0cf3e7214c6bc0d09/astropy_helpers/openmp_helpers.py#L279-L308 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.GetValue | def GetValue(self, row, col):
"""
Find the matching value from pandas DataFrame,
return it.
"""
if len(self.dataframe):
return str(self.dataframe.iloc[row, col])
return '' | python | def GetValue(self, row, col):
"""
Find the matching value from pandas DataFrame,
return it.
"""
if len(self.dataframe):
return str(self.dataframe.iloc[row, col])
return '' | Find the matching value from pandas DataFrame,
return it. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L43-L50 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetValue | def SetValue(self, row, col, value):
"""
Set value in the pandas DataFrame
"""
self.dataframe.iloc[row, col] = value | python | def SetValue(self, row, col, value):
"""
Set value in the pandas DataFrame
"""
self.dataframe.iloc[row, col] = value | Set value in the pandas DataFrame | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L52-L56 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetColumnValues | def SetColumnValues(self, col, value):
"""
Custom method to efficiently set all values
in a column.
Parameters
----------
col : str or int
name or index position of column
value : list-like
values to assign to all cells in the column
... | python | def SetColumnValues(self, col, value):
"""
Custom method to efficiently set all values
in a column.
Parameters
----------
col : str or int
name or index position of column
value : list-like
values to assign to all cells in the column
... | Custom method to efficiently set all values
in a column.
Parameters
----------
col : str or int
name or index position of column
value : list-like
values to assign to all cells in the column | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L58-L73 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.GetColLabelValue | def GetColLabelValue(self, col):
"""
Get col label from dataframe
"""
if len(self.dataframe):
return self.dataframe.columns[col]
return '' | python | def GetColLabelValue(self, col):
"""
Get col label from dataframe
"""
if len(self.dataframe):
return self.dataframe.columns[col]
return '' | Get col label from dataframe | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L75-L81 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeTable.SetColLabelValue | def SetColLabelValue(self, col, value):
"""
Set col label value in dataframe
"""
if len(self.dataframe):
col_name = str(self.dataframe.columns[col])
self.dataframe.rename(columns={col_name: str(value)}, inplace=True)
return None | python | def SetColLabelValue(self, col, value):
"""
Set col label value in dataframe
"""
if len(self.dataframe):
col_name = str(self.dataframe.columns[col])
self.dataframe.rename(columns={col_name: str(value)}, inplace=True)
return None | Set col label value in dataframe | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L83-L90 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.set_scrollbars | def set_scrollbars(self):
"""
Set to always have vertical scrollbar.
Have horizontal scrollbar unless grid has very few rows.
Older versions of wxPython will choke on this,
in which case nothing happens.
"""
try:
if len(self.row_labels) < 5:
... | python | def set_scrollbars(self):
"""
Set to always have vertical scrollbar.
Have horizontal scrollbar unless grid has very few rows.
Older versions of wxPython will choke on this,
in which case nothing happens.
"""
try:
if len(self.row_labels) < 5:
... | Set to always have vertical scrollbar.
Have horizontal scrollbar unless grid has very few rows.
Older versions of wxPython will choke on this,
in which case nothing happens. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L144-L158 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.add_items | def add_items(self, dataframe, hide_cols=()):
"""
Add items and/or update existing items in grid
"""
# replace "None" values with ""
dataframe = dataframe.fillna("")
# remove any columns that shouldn't be shown
for col in hide_cols:
if col in dataframe... | python | def add_items(self, dataframe, hide_cols=()):
"""
Add items and/or update existing items in grid
"""
# replace "None" values with ""
dataframe = dataframe.fillna("")
# remove any columns that shouldn't be shown
for col in hide_cols:
if col in dataframe... | Add items and/or update existing items in grid | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L160-L191 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.save_items | def save_items(self, rows=None, verbose=False):
"""
Return a dictionary of row data for selected rows:
{1: {col1: val1, col2: val2}, ...}
If a list of row numbers isn't provided, get data for all.
"""
if rows:
rows = rows
else:
rows = list(... | python | def save_items(self, rows=None, verbose=False):
"""
Return a dictionary of row data for selected rows:
{1: {col1: val1, col2: val2}, ...}
If a list of row numbers isn't provided, get data for all.
"""
if rows:
rows = rows
else:
rows = list(... | Return a dictionary of row data for selected rows:
{1: {col1: val1, col2: val2}, ...}
If a list of row numbers isn't provided, get data for all. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L194-L213 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.on_edit_grid | def on_edit_grid(self, event):
"""sets self.changes to true when user edits the grid.
provides down and up key functionality for exiting the editor"""
if not self.changes:
self.changes = {event.Row}
else:
self.changes.add(event.Row)
#self.changes = True
... | python | def on_edit_grid(self, event):
"""sets self.changes to true when user edits the grid.
provides down and up key functionality for exiting the editor"""
if not self.changes:
self.changes = {event.Row}
else:
self.changes.add(event.Row)
#self.changes = True
... | sets self.changes to true when user edits the grid.
provides down and up key functionality for exiting the editor | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L236-L249 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.do_paste | def do_paste(self, event):
"""
Read clipboard into dataframe
Paste data into grid, adding extra rows if needed
and ignoring extra columns.
"""
# find where the user has clicked
col_ind = self.GetGridCursorCol()
row_ind = self.GetGridCursorRow()
# r... | python | def do_paste(self, event):
"""
Read clipboard into dataframe
Paste data into grid, adding extra rows if needed
and ignoring extra columns.
"""
# find where the user has clicked
col_ind = self.GetGridCursorCol()
row_ind = self.GetGridCursorRow()
# r... | Read clipboard into dataframe
Paste data into grid, adding extra rows if needed
and ignoring extra columns. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L281-L317 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.update_changes_after_row_delete | def update_changes_after_row_delete(self, row_num):
"""
Update self.changes so that row numbers for edited rows are still correct.
I.e., if row 4 was edited and then row 2 was deleted, row 4 becomes row 3.
This function updates self.changes to reflect that.
"""
if row_num... | python | def update_changes_after_row_delete(self, row_num):
"""
Update self.changes so that row numbers for edited rows are still correct.
I.e., if row 4 was edited and then row 2 was deleted, row 4 becomes row 3.
This function updates self.changes to reflect that.
"""
if row_num... | Update self.changes so that row numbers for edited rows are still correct.
I.e., if row 4 was edited and then row 2 was deleted, row 4 becomes row 3.
This function updates self.changes to reflect that. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L345-L361 |
PmagPy/PmagPy | dialogs/magic_grid3.py | BaseMagicGrid.paint_invalid_cell | def paint_invalid_cell(self, row, col, color='MEDIUM VIOLET RED',
skip_cell=False):
"""
Take row, column, and turn it color
"""
self.SetColLabelRenderer(col, MyColLabelRenderer('#1101e0'))
# SetCellRenderer doesn't work with table-based grid (HugeGrid c... | python | def paint_invalid_cell(self, row, col, color='MEDIUM VIOLET RED',
skip_cell=False):
"""
Take row, column, and turn it color
"""
self.SetColLabelRenderer(col, MyColLabelRenderer('#1101e0'))
# SetCellRenderer doesn't work with table-based grid (HugeGrid c... | Take row, column, and turn it color | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L443-L451 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeMagicGrid.add_col | def add_col(self, label):
"""
Update table dataframe, and append a new column
Parameters
----------
label : str
Returns
---------
last_col: int
index column number of added col
"""
self.table.dataframe[label] = ''
self... | python | def add_col(self, label):
"""
Update table dataframe, and append a new column
Parameters
----------
label : str
Returns
---------
last_col: int
index column number of added col
"""
self.table.dataframe[label] = ''
self... | Update table dataframe, and append a new column
Parameters
----------
label : str
Returns
---------
last_col: int
index column number of added col | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L597-L616 |
PmagPy/PmagPy | dialogs/magic_grid3.py | HugeMagicGrid.remove_col | def remove_col(self, col_num):
"""
update table dataframe, and remove a column.
resize grid to display correctly
"""
label_value = self.GetColLabelValue(col_num).strip('**').strip('^^')
self.col_labels.remove(label_value)
del self.table.dataframe[label_value]
... | python | def remove_col(self, col_num):
"""
update table dataframe, and remove a column.
resize grid to display correctly
"""
label_value = self.GetColLabelValue(col_num).strip('**').strip('^^')
self.col_labels.remove(label_value)
del self.table.dataframe[label_value]
... | update table dataframe, and remove a column.
resize grid to display correctly | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/magic_grid3.py#L619-L629 |
PmagPy/PmagPy | programs/plotdi_a.py | main | def main():
"""
NAME
plotdi_a.py
DESCRIPTION
plots equal area projection from dec inc data and fisher mean, cone of confidence
INPUT FORMAT
takes dec, inc, alpha95 as first three columns in space delimited file
SYNTAX
plotdi_a.py [-i][-f FILE]
OPTIONS
-f ... | python | def main():
"""
NAME
plotdi_a.py
DESCRIPTION
plots equal area projection from dec inc data and fisher mean, cone of confidence
INPUT FORMAT
takes dec, inc, alpha95 as first three columns in space delimited file
SYNTAX
plotdi_a.py [-i][-f FILE]
OPTIONS
-f ... | NAME
plotdi_a.py
DESCRIPTION
plots equal area projection from dec inc data and fisher mean, cone of confidence
INPUT FORMAT
takes dec, inc, alpha95 as first three columns in space delimited file
SYNTAX
plotdi_a.py [-i][-f FILE]
OPTIONS
-f FILE to read file name f... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/plotdi_a.py#L9-L84 |
PmagPy/PmagPy | programs/di_rot.py | main | def main():
"""
NAME
di_rot.py
DESCRIPTION
rotates set of directions to new coordinate system
SYNTAX
di_rot.py [command line options]
OPTIONS
-h prints help message and quits
-f specify input file, default is standard input
-F specify output file, d... | python | def main():
"""
NAME
di_rot.py
DESCRIPTION
rotates set of directions to new coordinate system
SYNTAX
di_rot.py [command line options]
OPTIONS
-h prints help message and quits
-f specify input file, default is standard input
-F specify output file, d... | NAME
di_rot.py
DESCRIPTION
rotates set of directions to new coordinate system
SYNTAX
di_rot.py [command line options]
OPTIONS
-h prints help message and quits
-f specify input file, default is standard input
-F specify output file, default is standard outpu... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/di_rot.py#L11-L72 |
PmagPy/PmagPy | programs/conversion_scripts2/_2g_bin_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
_2g_bin_magic.py
DESCRIPTION
takes the binary 2g format magnetometer files and converts them to magic_measurements, er_samples.txt and er_sites.txt file
SYNTAX
2g_bin_magic.py [command line options]
OPTIONS
-f FILE: s... | python | def main(command_line=True, **kwargs):
"""
NAME
_2g_bin_magic.py
DESCRIPTION
takes the binary 2g format magnetometer files and converts them to magic_measurements, er_samples.txt and er_sites.txt file
SYNTAX
2g_bin_magic.py [command line options]
OPTIONS
-f FILE: s... | NAME
_2g_bin_magic.py
DESCRIPTION
takes the binary 2g format magnetometer files and converts them to magic_measurements, er_samples.txt and er_sites.txt file
SYNTAX
2g_bin_magic.py [command line options]
OPTIONS
-f FILE: specify input 2g (binary) file
-F FILE: spec... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/conversion_scripts2/_2g_bin_magic2.py#L20-L482 |
PmagPy/PmagPy | programs/unsquish.py | main | def main():
"""
NAME
unsquish.py
DESCRIPTION
takes dec/inc data and "unsquishes" with specified flattening factor, flt
using formula tan(If)=(1/flt)*tan(Io)
INPUT
declination inclination
OUTPUT
"unsquished" declincation inclination
SYNTA... | python | def main():
"""
NAME
unsquish.py
DESCRIPTION
takes dec/inc data and "unsquishes" with specified flattening factor, flt
using formula tan(If)=(1/flt)*tan(Io)
INPUT
declination inclination
OUTPUT
"unsquished" declincation inclination
SYNTA... | NAME
unsquish.py
DESCRIPTION
takes dec/inc data and "unsquishes" with specified flattening factor, flt
using formula tan(If)=(1/flt)*tan(Io)
INPUT
declination inclination
OUTPUT
"unsquished" declincation inclination
SYNTAX
unsquish.py [c... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/unsquish.py#L7-L60 |
PmagPy/PmagPy | programs/conversion_scripts2/iodp_jr6_magic2.py | main | def main(command_line=True, **kwargs):
"""
NAME
iodp_jr6_magic.py
DESCRIPTION
converts shipboard .jr6 format files to magic_measurements format files
SYNTAX
iodp_jr6_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: spe... | python | def main(command_line=True, **kwargs):
"""
NAME
iodp_jr6_magic.py
DESCRIPTION
converts shipboard .jr6 format files to magic_measurements format files
SYNTAX
iodp_jr6_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: spe... | NAME
iodp_jr6_magic.py
DESCRIPTION
converts shipboard .jr6 format files to magic_measurements format files
SYNTAX
iodp_jr6_magic.py [command line options]
OPTIONS
-h: prints the help message and quits.
-f FILE: specify input file, or
-F FILE: specify outpu... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/conversion_scripts2/iodp_jr6_magic2.py#L9-L245 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_n_ptrm | def get_n_ptrm(tmin, tmax, ptrm_temps, ptrm_starting_temps):
"""
input: tmin, tmax, ptrm_temps, ptrm_starting_temps
returns number of ptrm_checks included in best fit segment.
excludes checks if temp exceeds tmax OR if starting temp exceeds tmax.
output: n_ptrm, ptrm_checks_included_temperatures
... | python | def get_n_ptrm(tmin, tmax, ptrm_temps, ptrm_starting_temps):
"""
input: tmin, tmax, ptrm_temps, ptrm_starting_temps
returns number of ptrm_checks included in best fit segment.
excludes checks if temp exceeds tmax OR if starting temp exceeds tmax.
output: n_ptrm, ptrm_checks_included_temperatures
... | input: tmin, tmax, ptrm_temps, ptrm_starting_temps
returns number of ptrm_checks included in best fit segment.
excludes checks if temp exceeds tmax OR if starting temp exceeds tmax.
output: n_ptrm, ptrm_checks_included_temperatures | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L11-L27 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_max_ptrm_check | def get_max_ptrm_check(ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai):
"""
input: ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai.
sorts through included ptrm_checks and finds the largest ptrm check diff,
the sum of the total diffs,
and the perce... | python | def get_max_ptrm_check(ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai):
"""
input: ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai.
sorts through included ptrm_checks and finds the largest ptrm check diff,
the sum of the total diffs,
and the perce... | input: ptrm_checks_included_temps, ptrm_checks_all_temps, ptrm_x, t_Arai, x_Arai.
sorts through included ptrm_checks and finds the largest ptrm check diff,
the sum of the total diffs,
and the percentage of the largest check / original measurement at that temperature step
output: max_diff, sum_diffs, che... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L29-L63 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_DRAT | def get_DRAT(delta_x_prime, delta_y_prime, max_ptrm_check):
"""
Input: TRM length of best fit line (delta_x_prime),
NRM length of best fit line,
max_ptrm_check
Output: DRAT (maximum difference produced by a ptrm check normed by best fit line),
length best fit line
"""
L = num... | python | def get_DRAT(delta_x_prime, delta_y_prime, max_ptrm_check):
"""
Input: TRM length of best fit line (delta_x_prime),
NRM length of best fit line,
max_ptrm_check
Output: DRAT (maximum difference produced by a ptrm check normed by best fit line),
length best fit line
"""
L = num... | Input: TRM length of best fit line (delta_x_prime),
NRM length of best fit line,
max_ptrm_check
Output: DRAT (maximum difference produced by a ptrm check normed by best fit line),
length best fit line | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L73-L83 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_CDRAT | def get_CDRAT(L, sum_ptrm_checks, sum_abs_ptrm_checks):
"""
input: best_fit line length, sum of ptrm check diffs,
sum of absolute value of ptrm check diffs
output: CDRAT (uses sum of diffs), CDRAT_prime (uses sum of absolute diffs)
"""
CDRAT = (old_div(sum_ptrm_checks, L)) * 100.
CDRAT_p... | python | def get_CDRAT(L, sum_ptrm_checks, sum_abs_ptrm_checks):
"""
input: best_fit line length, sum of ptrm check diffs,
sum of absolute value of ptrm check diffs
output: CDRAT (uses sum of diffs), CDRAT_prime (uses sum of absolute diffs)
"""
CDRAT = (old_div(sum_ptrm_checks, L)) * 100.
CDRAT_p... | input: best_fit line length, sum of ptrm check diffs,
sum of absolute value of ptrm check diffs
output: CDRAT (uses sum of diffs), CDRAT_prime (uses sum of absolute diffs) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L96-L104 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_DRATS | def get_DRATS(sum_ptrm_checks, sum_abs_ptrm_checks, x_Arai, end):
"""
input: sum of ptrm check diffs, sum of absolute value of ptrm check diffs,
x_Arai set of points, end.
output: DRATS (uses sum of diffs), DRATS_prime (uses sum of absolute diffs)
"""
DRATS = (old_div(sum_ptrm_checks, x_Arai... | python | def get_DRATS(sum_ptrm_checks, sum_abs_ptrm_checks, x_Arai, end):
"""
input: sum of ptrm check diffs, sum of absolute value of ptrm check diffs,
x_Arai set of points, end.
output: DRATS (uses sum of diffs), DRATS_prime (uses sum of absolute diffs)
"""
DRATS = (old_div(sum_ptrm_checks, x_Arai... | input: sum of ptrm check diffs, sum of absolute value of ptrm check diffs,
x_Arai set of points, end.
output: DRATS (uses sum of diffs), DRATS_prime (uses sum of absolute diffs) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L106-L114 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_mean_DRAT | def get_mean_DRAT(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L
output: mean DRAT (the average difference produced by a pTRM check,
normalized by the length of the best-fit line)
"""
if not n_pTRM:
return float('nan'), float(... | python | def get_mean_DRAT(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L
output: mean DRAT (the average difference produced by a pTRM check,
normalized by the length of the best-fit line)
"""
if not n_pTRM:
return float('nan'), float(... | input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, L
output: mean DRAT (the average difference produced by a pTRM check,
normalized by the length of the best-fit line) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L116-L126 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_mean_DEV | def get_mean_DEV(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime
output: Mean deviation of a pTRM check
"""
if not n_pTRM:
return float('nan'), float('nan')
mean_DEV = ((old_div(1., n_pTRM)) * (old_div(s... | python | def get_mean_DEV(sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime):
"""
input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime
output: Mean deviation of a pTRM check
"""
if not n_pTRM:
return float('nan'), float('nan')
mean_DEV = ((old_div(1., n_pTRM)) * (old_div(s... | input: sum_ptrm_checks, sum_abs_ptrm_checks, n_pTRM, delta_x_prime
output: Mean deviation of a pTRM check | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L128-L137 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_delta_pal_vectors | def get_delta_pal_vectors(PTRMS, PTRM_Checks, NRM):
""" takes in PTRM data in this format: [temp, dec, inc, moment, ZI or IZ] -- and PTRM_check data in this format: [temp, dec, inc, moment]. Returns them in vector form (cartesian). """
PTRMS = numpy.array(PTRMS)
PTRM_Checks = numpy.array(PTRM_Checks)
T... | python | def get_delta_pal_vectors(PTRMS, PTRM_Checks, NRM):
""" takes in PTRM data in this format: [temp, dec, inc, moment, ZI or IZ] -- and PTRM_check data in this format: [temp, dec, inc, moment]. Returns them in vector form (cartesian). """
PTRMS = numpy.array(PTRMS)
PTRM_Checks = numpy.array(PTRM_Checks)
T... | takes in PTRM data in this format: [temp, dec, inc, moment, ZI or IZ] -- and PTRM_check data in this format: [temp, dec, inc, moment]. Returns them in vector form (cartesian). | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L139-L152 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_diffs | def get_diffs(ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig):
"""
input: ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig
output: vector diffs between original and ptrm check, C
"""
ptrm_temps = numpy.array(ptrms_orig)[:,0]
check_temps = numpy.array(checks_orig)[:,0]
... | python | def get_diffs(ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig):
"""
input: ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig
output: vector diffs between original and ptrm check, C
"""
ptrm_temps = numpy.array(ptrms_orig)[:,0]
check_temps = numpy.array(checks_orig)[:,0]
... | input: ptrms_vectors, ptrm_checks_vectors, ptrms_orig, checks_orig
output: vector diffs between original and ptrm check, C | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L154-L178 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_TRM_star | def get_TRM_star(C, ptrms_vectors, start, end):
"""
input: C, ptrms_vectors, start, end
output: TRM_star, x_star (for delta_pal statistic)
"""
TRM_star = numpy.zeros([len(ptrms_vectors), 3])
TRM_star[0] = [0., 0., 0.]
x_star = numpy.zeros(len(ptrms_vectors))
for num, vec in enumerate(ptr... | python | def get_TRM_star(C, ptrms_vectors, start, end):
"""
input: C, ptrms_vectors, start, end
output: TRM_star, x_star (for delta_pal statistic)
"""
TRM_star = numpy.zeros([len(ptrms_vectors), 3])
TRM_star[0] = [0., 0., 0.]
x_star = numpy.zeros(len(ptrms_vectors))
for num, vec in enumerate(ptr... | input: C, ptrms_vectors, start, end
output: TRM_star, x_star (for delta_pal statistic) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L180-L196 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_b_star | def get_b_star(x_star, y_err, y_mean, y_segment):
"""
input: x_star, y_err, y_mean, y_segment
output: b_star (corrected slope for delta_pal statistic)
"""
#print "x_star, should be same as Xcorr / NRM"
#print x_star
x_star_mean = numpy.mean(x_star)
x_err = x_star - x_star_mean
b_star... | python | def get_b_star(x_star, y_err, y_mean, y_segment):
"""
input: x_star, y_err, y_mean, y_segment
output: b_star (corrected slope for delta_pal statistic)
"""
#print "x_star, should be same as Xcorr / NRM"
#print x_star
x_star_mean = numpy.mean(x_star)
x_err = x_star - x_star_mean
b_star... | input: x_star, y_err, y_mean, y_segment
output: b_star (corrected slope for delta_pal statistic) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L198-L212 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_delta_pal | def get_delta_pal(b, b_star):
"""
input: b, b_star (actual and corrected slope)
output: delta_pal
"""
delta_pal = numpy.abs(old_div((b - b_star), b)) * 100
return delta_pal | python | def get_delta_pal(b, b_star):
"""
input: b, b_star (actual and corrected slope)
output: delta_pal
"""
delta_pal = numpy.abs(old_div((b - b_star), b)) * 100
return delta_pal | input: b, b_star (actual and corrected slope)
output: delta_pal | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L215-L221 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_full_delta_pal | def get_full_delta_pal(PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment):
"""
input: PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment
runs full sequence necessary to get delta_pal
"""
#print "-------"
#print "calling get_full_delta_pal in lib"
# return 0
PT... | python | def get_full_delta_pal(PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment):
"""
input: PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment
runs full sequence necessary to get delta_pal
"""
#print "-------"
#print "calling get_full_delta_pal in lib"
# return 0
PT... | input: PTRMS, PTRM_Checks, NRM, y_err, y_mean, b, start, end, y_segment
runs full sequence necessary to get delta_pal | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L224-L241 |
PmagPy/PmagPy | SPD/lib/lib_ptrm_statistics.py | get_segments | def get_segments(ptrms, ptrm_checks, tmax):
"""
input: ptrms, ptrm_checks, tmax
grabs ptrms that are done below tmax
grabs ptrm checks that are done below tmax AND whose starting temp is below tmax
output: ptrms_included, checks_included
"""
ptrms_included = []
checks_included = []
p... | python | def get_segments(ptrms, ptrm_checks, tmax):
"""
input: ptrms, ptrm_checks, tmax
grabs ptrms that are done below tmax
grabs ptrm checks that are done below tmax AND whose starting temp is below tmax
output: ptrms_included, checks_included
"""
ptrms_included = []
checks_included = []
p... | input: ptrms, ptrm_checks, tmax
grabs ptrms that are done below tmax
grabs ptrm checks that are done below tmax AND whose starting temp is below tmax
output: ptrms_included, checks_included | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_ptrm_statistics.py#L243-L261 |
PmagPy/PmagPy | pmagpy/Fit.py | Fit.select | def select(self):
"""
Makes this fit the selected fit on the GUI that is it's parent
(Note: may be moved into GUI soon)
"""
if self.GUI==None: return
self.GUI.current_fit = self
if self.tmax != None and self.tmin != None:
self.GUI.update_bounds_boxes()... | python | def select(self):
"""
Makes this fit the selected fit on the GUI that is it's parent
(Note: may be moved into GUI soon)
"""
if self.GUI==None: return
self.GUI.current_fit = self
if self.tmax != None and self.tmin != None:
self.GUI.update_bounds_boxes()... | Makes this fit the selected fit on the GUI that is it's parent
(Note: may be moved into GUI soon) | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/Fit.py#L58-L72 |
PmagPy/PmagPy | pmagpy/Fit.py | Fit.get | def get(self,coordinate_system):
"""
Return the pmagpy paramters dictionary associated with this fit and the given
coordinate system
@param: coordinate_system -> the coordinate system who's parameters to return
"""
if coordinate_system == 'DA-DIR' or coordinate_system == ... | python | def get(self,coordinate_system):
"""
Return the pmagpy paramters dictionary associated with this fit and the given
coordinate system
@param: coordinate_system -> the coordinate system who's parameters to return
"""
if coordinate_system == 'DA-DIR' or coordinate_system == ... | Return the pmagpy paramters dictionary associated with this fit and the given
coordinate system
@param: coordinate_system -> the coordinate system who's parameters to return | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/Fit.py#L74-L88 |
PmagPy/PmagPy | pmagpy/Fit.py | Fit.put | def put(self,specimen,coordinate_system,new_pars):
"""
Given a coordinate system and a new parameters dictionary that follows pmagpy
convention given by the pmag.py/domean function it alters this fit's bounds and
parameters such that it matches the new data.
@param: specimen -> N... | python | def put(self,specimen,coordinate_system,new_pars):
"""
Given a coordinate system and a new parameters dictionary that follows pmagpy
convention given by the pmag.py/domean function it alters this fit's bounds and
parameters such that it matches the new data.
@param: specimen -> N... | Given a coordinate system and a new parameters dictionary that follows pmagpy
convention given by the pmag.py/domean function it alters this fit's bounds and
parameters such that it matches the new data.
@param: specimen -> None if fit is for a site or a sample or a valid specimen from self.GUI
... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/Fit.py#L90-L146 |
PmagPy/PmagPy | pmagpy/Fit.py | Fit.has_values | def has_values(self, name, tmin, tmax):
"""
A basic fit equality checker compares name and bounds of 2 fits
@param: name -> name of the other fit
@param: tmin -> lower bound of the other fit
@param: tmax -> upper bound of the other fit
@return: boolean comaparing 2 fits
... | python | def has_values(self, name, tmin, tmax):
"""
A basic fit equality checker compares name and bounds of 2 fits
@param: name -> name of the other fit
@param: tmin -> lower bound of the other fit
@param: tmax -> upper bound of the other fit
@return: boolean comaparing 2 fits
... | A basic fit equality checker compares name and bounds of 2 fits
@param: name -> name of the other fit
@param: tmin -> lower bound of the other fit
@param: tmax -> upper bound of the other fit
@return: boolean comaparing 2 fits | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/pmagpy/Fit.py#L160-L168 |
PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_n_tail | def get_n_tail(tmax, tail_temps):
"""determines number of included tail checks in best fit segment"""
#print "tail_temps: {0}, tmax: {0}".format(tail_temps, tmax)
t_index = 0
adj_tmax = 0
if tmax < tail_temps[0]:
return 0
try:
t_index = list(tail_temps).index(tmax)
except: # ... | python | def get_n_tail(tmax, tail_temps):
"""determines number of included tail checks in best fit segment"""
#print "tail_temps: {0}, tmax: {0}".format(tail_temps, tmax)
t_index = 0
adj_tmax = 0
if tmax < tail_temps[0]:
return 0
try:
t_index = list(tail_temps).index(tmax)
except: # ... | determines number of included tail checks in best fit segment | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_tail_check_statistics.py#L7-L22 |
PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_max_tail_check | def get_max_tail_check(y_Arai, y_tail, t_Arai, tail_temps, n_tail):
"""
input: y_Arai, y_tail, t_Arai, tail_temps, n_tail
output: max_check, diffs
"""
if not n_tail:
return float('nan'), []
tail_compare = []
y_Arai_compare = []
for temp in tail_temps[:n_tail]:
tail_index ... | python | def get_max_tail_check(y_Arai, y_tail, t_Arai, tail_temps, n_tail):
"""
input: y_Arai, y_tail, t_Arai, tail_temps, n_tail
output: max_check, diffs
"""
if not n_tail:
return float('nan'), []
tail_compare = []
y_Arai_compare = []
for temp in tail_temps[:n_tail]:
tail_index ... | input: y_Arai, y_tail, t_Arai, tail_temps, n_tail
output: max_check, diffs | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_tail_check_statistics.py#L25-L44 |
PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_DRAT_tail | def get_DRAT_tail(max_check, L):
"""
input: tail_check_max, best fit line length
output: DRAT_tail
"""
if max_check == 0:
return float('nan')
DRAT_tail = (old_div(max_check, L)) * 100.
return DRAT_tail | python | def get_DRAT_tail(max_check, L):
"""
input: tail_check_max, best fit line length
output: DRAT_tail
"""
if max_check == 0:
return float('nan')
DRAT_tail = (old_div(max_check, L)) * 100.
return DRAT_tail | input: tail_check_max, best fit line length
output: DRAT_tail | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_tail_check_statistics.py#L47-L55 |
PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_delta_TR | def get_delta_TR(tail_check_max, y_int):
"""
input: tail_check_max, y_intercept
output: delta_TR
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
delta_TR = (old_div(tail_check_max, abs(y_int))) * 100.
return delta_TR | python | def get_delta_TR(tail_check_max, y_int):
"""
input: tail_check_max, y_intercept
output: delta_TR
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
delta_TR = (old_div(tail_check_max, abs(y_int))) * 100.
return delta_TR | input: tail_check_max, y_intercept
output: delta_TR | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_tail_check_statistics.py#L58-L66 |
PmagPy/PmagPy | SPD/lib/lib_tail_check_statistics.py | get_MD_VDS | def get_MD_VDS(tail_check_max, vds):
"""
input: tail_check_max, vector difference sum
output: MD_VDS
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
MD_VDS = (old_div(tail_check_max, vds)) * 100
return MD_VDS | python | def get_MD_VDS(tail_check_max, vds):
"""
input: tail_check_max, vector difference sum
output: MD_VDS
"""
if tail_check_max == 0 or numpy.isnan(tail_check_max):
return float('nan')
MD_VDS = (old_div(tail_check_max, vds)) * 100
return MD_VDS | input: tail_check_max, vector difference sum
output: MD_VDS | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/SPD/lib/lib_tail_check_statistics.py#L69-L77 |
PmagPy/PmagPy | programs/dir_redo.py | main | def main():
"""
NAME
dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, defaul... | python | def main():
"""
NAME
dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, defaul... | NAME
dir_redo.py
DESCRIPTION
converts the Cogne DIR format to PmagPy redo file
SYNTAX
dir_redo.py [-h] [command line options]
OPTIONS
-h: prints help message and quits
-f FILE: specify input file
-F FILE: specify output file, default is 'zeq_redo' | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/dir_redo.py#L5-L76 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.set_dm | def set_dm(self, num):
"""
Make GUI changes based on data model num.
Get info from WD in appropriate format.
"""
#enable or disable self.btn1a
if self.data_model_num == 3:
self.btn1a.Enable()
else:
self.btn1a.Disable()
#
# s... | python | def set_dm(self, num):
"""
Make GUI changes based on data model num.
Get info from WD in appropriate format.
"""
#enable or disable self.btn1a
if self.data_model_num == 3:
self.btn1a.Enable()
else:
self.btn1a.Disable()
#
# s... | Make GUI changes based on data model num.
Get info from WD in appropriate format. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L105-L128 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_wd_data | def get_wd_data(self):
"""
Show dialog to get user input for which directory
to set as working directory.
Called by self.get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in a... | python | def get_wd_data(self):
"""
Show dialog to get user input for which directory
to set as working directory.
Called by self.get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in a... | Show dialog to get user input for which directory
to set as working directory.
Called by self.get_dm_and_wd | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L130-L140 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_wd_data2 | def get_wd_data2(self):
"""
Get 2.5 data from self.WD and put it into
ErMagicBuilder object.
Called by get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in any available data ... | python | def get_wd_data2(self):
"""
Get 2.5 data from self.WD and put it into
ErMagicBuilder object.
Called by get_dm_and_wd
"""
wait = wx.BusyInfo('Reading in data from current working directory, please wait...')
#wx.Yield()
print('-I- Read in any available data ... | Get 2.5 data from self.WD and put it into
ErMagicBuilder object.
Called by get_dm_and_wd | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L142-L154 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.InitUI | def InitUI(self):
"""
Build the mainframe
"""
menubar = pmag_gui_menu.MagICMenu(self, data_model_num=self.data_model_num)
self.SetMenuBar(menubar)
#pnl = self.panel
#---sizer logo ----
#start_image = wx.Image("/Users/ronshaar/PmagPy/images/logo2.png")
... | python | def InitUI(self):
"""
Build the mainframe
"""
menubar = pmag_gui_menu.MagICMenu(self, data_model_num=self.data_model_num)
self.SetMenuBar(menubar)
#pnl = self.panel
#---sizer logo ----
#start_image = wx.Image("/Users/ronshaar/PmagPy/images/logo2.png")
... | Build the mainframe | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L156-L333 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.get_dir | def get_dir(self):
"""
Choose a working directory dialog.
Called by self.get_dm_and_wd.
"""
if "-WD" in sys.argv and self.FIRST_RUN:
ind = sys.argv.index('-WD')
self.WD = os.path.abspath(sys.argv[ind+1])
os.chdir(self.WD)
self.WD = ... | python | def get_dir(self):
"""
Choose a working directory dialog.
Called by self.get_dm_and_wd.
"""
if "-WD" in sys.argv and self.FIRST_RUN:
ind = sys.argv.index('-WD')
self.WD = os.path.abspath(sys.argv[ind+1])
os.chdir(self.WD)
self.WD = ... | Choose a working directory dialog.
Called by self.get_dm_and_wd. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L337-L352 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_thellier_gui | def on_btn_thellier_gui(self, event):
"""
Open Thellier GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "thellier_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%... | python | def on_btn_thellier_gui(self, event):
"""
Open Thellier GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "thellier_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%... | Open Thellier GUI | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L441-L471 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_demag_gui | def on_btn_demag_gui(self, event):
"""
Open Demag GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "demag_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%(outstri... | python | def on_btn_demag_gui(self, event):
"""
Open Demag GUI
"""
if not self.check_for_meas_file():
return
if not self.check_for_uncombined_files():
return
outstring = "demag_gui.py -WD %s"%self.WD
print("-I- running python script:\n %s"%(outstri... | Open Demag GUI | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L474-L504 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_convert_3 | def on_btn_convert_3(self, event):
"""
Open dialog for rough conversion of
2.5 files to 3.0 files.
Offer link to earthref for proper upgrade.
"""
dia = pw.UpgradeDialog(None)
dia.Center()
res = dia.ShowModal()
if res == wx.ID_CANCEL:
we... | python | def on_btn_convert_3(self, event):
"""
Open dialog for rough conversion of
2.5 files to 3.0 files.
Offer link to earthref for proper upgrade.
"""
dia = pw.UpgradeDialog(None)
dia.Center()
res = dia.ShowModal()
if res == wx.ID_CANCEL:
we... | Open dialog for rough conversion of
2.5 files to 3.0 files.
Offer link to earthref for proper upgrade. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L528-L571 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_metadata | def on_btn_metadata(self, event):
"""
Initiate the series of windows to add metadata
to the contribution.
"""
# make sure we have a measurements file
if not self.check_for_meas_file():
return
# make sure all files of the same type have been combined
... | python | def on_btn_metadata(self, event):
"""
Initiate the series of windows to add metadata
to the contribution.
"""
# make sure we have a measurements file
if not self.check_for_meas_file():
return
# make sure all files of the same type have been combined
... | Initiate the series of windows to add metadata
to the contribution. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L574-L600 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.init_check_window2 | def init_check_window2(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame(self, 'Check Data',
s... | python | def init_check_window2(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame(self, 'Check Data',
s... | initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L602-L608 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.init_check_window | def init_check_window(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame3(self, 'Check Data',
... | python | def init_check_window(self):
"""
initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc.
"""
self.check_dia = pmag_er_magic_dialogs.ErMagicCheckFrame3(self, 'Check Data',
... | initiates the object that will control steps 1-6
of checking headers, filling in cell values, etc. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L610-L616 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_orientation | def on_btn_orientation(self, event):
"""
Create and fill wxPython grid for entering
orientation data.
"""
wait = wx.BusyInfo('Compiling required data, please wait...')
wx.SafeYield()
#dw, dh = wx.DisplaySize()
size = wx.DisplaySize()
size = (size[0... | python | def on_btn_orientation(self, event):
"""
Create and fill wxPython grid for entering
orientation data.
"""
wait = wx.BusyInfo('Compiling required data, please wait...')
wx.SafeYield()
#dw, dh = wx.DisplaySize()
size = wx.DisplaySize()
size = (size[0... | Create and fill wxPython grid for entering
orientation data. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L619-L639 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_unpack | def on_btn_unpack(self, event):
"""
Create dialog to choose a file to unpack
with download magic.
Then run download_magic and create self.contribution.
"""
dlg = wx.FileDialog(
None, message = "choose txt file to unpack",
defaultDir=self.WD,
... | python | def on_btn_unpack(self, event):
"""
Create dialog to choose a file to unpack
with download magic.
Then run download_magic and create self.contribution.
"""
dlg = wx.FileDialog(
None, message = "choose txt file to unpack",
defaultDir=self.WD,
... | Create dialog to choose a file to unpack
with download magic.
Then run download_magic and create self.contribution. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L641-L681 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_btn_upload | def on_btn_upload(self, event):
"""
Try to run upload_magic.
Open validation mode if the upload file has problems.
"""
if not self.check_for_uncombined_files():
return
outstring="upload_magic.py"
print("-I- running python script:\n %s"%(outstring))
... | python | def on_btn_upload(self, event):
"""
Try to run upload_magic.
Open validation mode if the upload file has problems.
"""
if not self.check_for_uncombined_files():
return
outstring="upload_magic.py"
print("-I- running python script:\n %s"%(outstring))
... | Try to run upload_magic.
Open validation mode if the upload file has problems. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L684-L751 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_end_validation | def on_end_validation(self, event):
"""
Switch back from validation mode to main Pmag GUI mode.
Hide validation frame and show main frame.
"""
self.Enable()
self.Show()
self.magic_gui_frame.Destroy() | python | def on_end_validation(self, event):
"""
Switch back from validation mode to main Pmag GUI mode.
Hide validation frame and show main frame.
"""
self.Enable()
self.Show()
self.magic_gui_frame.Destroy() | Switch back from validation mode to main Pmag GUI mode.
Hide validation frame and show main frame. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L755-L762 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.on_menu_exit | def on_menu_exit(self, event):
"""
Exit the GUI
"""
# also delete appropriate copy file
try:
self.help_window.Destroy()
except:
pass
if '-i' in sys.argv:
self.Destroy()
try:
sys.exit() # can raise TypeError i... | python | def on_menu_exit(self, event):
"""
Exit the GUI
"""
# also delete appropriate copy file
try:
self.help_window.Destroy()
except:
pass
if '-i' in sys.argv:
self.Destroy()
try:
sys.exit() # can raise TypeError i... | Exit the GUI | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L765-L782 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.check_for_uncombined_files | def check_for_uncombined_files(self):
"""
Go through working directory and check for uncombined files.
(I.e., location1_specimens.txt and location2_specimens.txt but no specimens.txt.)
Show a warning if uncombined files are found.
Return True if no uncombined files are found OR u... | python | def check_for_uncombined_files(self):
"""
Go through working directory and check for uncombined files.
(I.e., location1_specimens.txt and location2_specimens.txt but no specimens.txt.)
Show a warning if uncombined files are found.
Return True if no uncombined files are found OR u... | Go through working directory and check for uncombined files.
(I.e., location1_specimens.txt and location2_specimens.txt but no specimens.txt.)
Show a warning if uncombined files are found.
Return True if no uncombined files are found OR user elects
to continue anyway. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L784-L809 |
PmagPy/PmagPy | programs/pmag_gui.py | MagMainFrame.check_for_meas_file | def check_for_meas_file(self):
"""
Check the working directory for a measurement file.
If not found, show a warning and return False.
Otherwise return True.
"""
if self.data_model_num == 2:
meas_file_name = "magic_measurements.txt"
dm = "2.5"
... | python | def check_for_meas_file(self):
"""
Check the working directory for a measurement file.
If not found, show a warning and return False.
Otherwise return True.
"""
if self.data_model_num == 2:
meas_file_name = "magic_measurements.txt"
dm = "2.5"
... | Check the working directory for a measurement file.
If not found, show a warning and return False.
Otherwise return True. | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/pmag_gui.py#L811-L826 |
PmagPy/PmagPy | programs/dayplot_magic.py | main | def main():
"""
NAME
dayplot_magic.py
DESCRIPTION
makes 'day plots' (Day et al. 1977) and squareness/coercivity,
plots 'linear mixing' curve from Dunlop and Carter-Stiglitz (2006).
squareness coercivity of remanence (Neel, 1955) plots after
Tauxe et al. (2002)
... | python | def main():
"""
NAME
dayplot_magic.py
DESCRIPTION
makes 'day plots' (Day et al. 1977) and squareness/coercivity,
plots 'linear mixing' curve from Dunlop and Carter-Stiglitz (2006).
squareness coercivity of remanence (Neel, 1955) plots after
Tauxe et al. (2002)
... | NAME
dayplot_magic.py
DESCRIPTION
makes 'day plots' (Day et al. 1977) and squareness/coercivity,
plots 'linear mixing' curve from Dunlop and Carter-Stiglitz (2006).
squareness coercivity of remanence (Neel, 1955) plots after
Tauxe et al. (2002)
SYNTAX
dayplo... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/dayplot_magic.py#L12-L45 |
PmagPy/PmagPy | dialogs/pmag_gui_menu2.py | MagICMenu.on_import1 | def on_import1(self, event):
"""
initialize window to import an arbitrary file into the working directory
"""
pmag_menu_dialogs.MoveFileIntoWD(self.parent, self.parent.WD) | python | def on_import1(self, event):
"""
initialize window to import an arbitrary file into the working directory
"""
pmag_menu_dialogs.MoveFileIntoWD(self.parent, self.parent.WD) | initialize window to import an arbitrary file into the working directory | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/pmag_gui_menu2.py#L168-L172 |
PmagPy/PmagPy | dialogs/pmag_gui_menu2.py | MagICMenu.orient_import2 | def orient_import2(self, event):
"""
initialize window to import an AzDip format file into the working directory
"""
pmag_menu_dialogs.ImportAzDipFile(self.parent, self.parent.WD) | python | def orient_import2(self, event):
"""
initialize window to import an AzDip format file into the working directory
"""
pmag_menu_dialogs.ImportAzDipFile(self.parent, self.parent.WD) | initialize window to import an AzDip format file into the working directory | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/dialogs/pmag_gui_menu2.py#L177-L181 |
PmagPy/PmagPy | programs/plot_map_pts.py | main | def main():
"""
NAME
plot_map_pts.py
DESCRIPTION
plots points on map
SYNTAX
plot_map_pts.py [command line options]
OPTIONS
-h prints help and quits
-sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for points
colors are r=red,b=blue,g=g... | python | def main():
"""
NAME
plot_map_pts.py
DESCRIPTION
plots points on map
SYNTAX
plot_map_pts.py [command line options]
OPTIONS
-h prints help and quits
-sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for points
colors are r=red,b=blue,g=g... | NAME
plot_map_pts.py
DESCRIPTION
plots points on map
SYNTAX
plot_map_pts.py [command line options]
OPTIONS
-h prints help and quits
-sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for points
colors are r=red,b=blue,g=green, etc.
sy... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/plot_map_pts.py#L14-L213 |
PmagPy/PmagPy | programs/s_hext.py | main | def main():
"""
NAME
s_hext.py
DESCRIPTION
calculates Hext statistics for tensor data
SYNTAX
s_hext.py [-h][-i][-f file] [<filename]
OPTIONS
-h prints help message and quits
-f file specifies filename on command line
-l NMEAS do line by line instead of... | python | def main():
"""
NAME
s_hext.py
DESCRIPTION
calculates Hext statistics for tensor data
SYNTAX
s_hext.py [-h][-i][-f file] [<filename]
OPTIONS
-h prints help message and quits
-f file specifies filename on command line
-l NMEAS do line by line instead of... | NAME
s_hext.py
DESCRIPTION
calculates Hext statistics for tensor data
SYNTAX
s_hext.py [-h][-i][-f file] [<filename]
OPTIONS
-h prints help message and quits
-f file specifies filename on command line
-l NMEAS do line by line instead of whole file, use number ... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/s_hext.py#L8-L76 |
PmagPy/PmagPy | data_files/LearningPython/UTM.py | _UTMLetterDesignator | def _UTMLetterDesignator(Lat):
"""
This routine determines the correct UTM letter designator for the given latitude
returns 'Z' if latitude is outside the UTM limits of 84N to 80S
Written by Chuck Gantz- chuck.gantz@globalstar.com
"""
if 84 >= Lat >= 72: return 'X'
... | python | def _UTMLetterDesignator(Lat):
"""
This routine determines the correct UTM letter designator for the given latitude
returns 'Z' if latitude is outside the UTM limits of 84N to 80S
Written by Chuck Gantz- chuck.gantz@globalstar.com
"""
if 84 >= Lat >= 72: return 'X'
... | This routine determines the correct UTM letter designator for the given latitude
returns 'Z' if latitude is outside the UTM limits of 84N to 80S
Written by Chuck Gantz- chuck.gantz@globalstar.com | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/data_files/LearningPython/UTM.py#L123-L150 |
PmagPy/PmagPy | data_files/LearningPython/UTM.py | UTMtoLL | def UTMtoLL(ReferenceEllipsoid, easting, northing, zone):
"""
converts UTM coords to lat/long. Equations from USGS Bulletin 1532
East Longitudes are positive, West longitudes are negative.
North latitudes are positive, South latitudes are negative
Lat and Long are in decimal deg... | python | def UTMtoLL(ReferenceEllipsoid, easting, northing, zone):
"""
converts UTM coords to lat/long. Equations from USGS Bulletin 1532
East Longitudes are positive, West longitudes are negative.
North latitudes are positive, South latitudes are negative
Lat and Long are in decimal deg... | converts UTM coords to lat/long. Equations from USGS Bulletin 1532
East Longitudes are positive, West longitudes are negative.
North latitudes are positive, South latitudes are negative
Lat and Long are in decimal degrees.
Written by Chuck Gantz- chuck.gantz@globalstar.com
Conve... | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/data_files/LearningPython/UTM.py#L152-L206 |
PmagPy/PmagPy | programs/magic_gui.py | MainFrame.InitUI | def InitUI(self):
"""
Make main user interface
"""
bSizer0 = wx.StaticBoxSizer(
wx.StaticBox(self.panel, wx.ID_ANY, "Choose MagIC project directory", name='bSizer0'), wx.HORIZONTAL
)
self.dir_path = wx.TextCtrl(self.panel, id=-1, size=(600, 25), style=wx.TE_RE... | python | def InitUI(self):
"""
Make main user interface
"""
bSizer0 = wx.StaticBoxSizer(
wx.StaticBox(self.panel, wx.ID_ANY, "Choose MagIC project directory", name='bSizer0'), wx.HORIZONTAL
)
self.dir_path = wx.TextCtrl(self.panel, id=-1, size=(600, 25), style=wx.TE_RE... | Make main user interface | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L89-L235 |
PmagPy/PmagPy | programs/magic_gui.py | MainFrame.on_change_dir_button | def on_change_dir_button(self, event=None):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
change_dir_dialog = wx.DirDialog(self.panel,
"Choose your working directory to create or edit a MagIC contribution:",... | python | def on_change_dir_button(self, event=None):
"""
create change directory frame
"""
currentDirectory = self.WD #os.getcwd()
change_dir_dialog = wx.DirDialog(self.panel,
"Choose your working directory to create or edit a MagIC contribution:",... | create change directory frame | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L238-L254 |
PmagPy/PmagPy | programs/magic_gui.py | MainFrame.make_grid_frame | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
try:
... | python | def make_grid_frame(self, event):
"""
Create a GridFrame for data type of the button that was clicked
"""
if self.grid_frame:
print('-I- You already have a grid frame open')
pw.simple_warning("You already have a grid open")
return
try:
... | Create a GridFrame for data type of the button that was clicked | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L287-L378 |
PmagPy/PmagPy | programs/magic_gui.py | MainFrame.highlight_problems | def highlight_problems(self, has_problems):
"""
Outline grid buttons in red if they have validation errors
"""
if has_problems:
self.validation_mode = set(has_problems)
# highlighting doesn't work with Windows
if sys.platform in ['win32', 'win62']:
... | python | def highlight_problems(self, has_problems):
"""
Outline grid buttons in red if they have validation errors
"""
if has_problems:
self.validation_mode = set(has_problems)
# highlighting doesn't work with Windows
if sys.platform in ['win32', 'win62']:
... | Outline grid buttons in red if they have validation errors | https://github.com/PmagPy/PmagPy/blob/c7984f8809bf40fe112e53dcc311a33293b62d0b/programs/magic_gui.py#L402-L431 |
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