repository_name stringlengths 5 67 | func_path_in_repository stringlengths 4 234 | func_name stringlengths 0 314 | whole_func_string stringlengths 52 3.87M | language stringclasses 6
values | func_code_string stringlengths 52 3.87M | func_documentation_string stringlengths 1 47.2k | func_code_url stringlengths 85 339 |
|---|---|---|---|---|---|---|---|
dahlia/sqlalchemy-imageattach | sqlalchemy_imageattach/entity.py | BaseImageSet.find_thumbnail | def find_thumbnail(self, width=None, height=None):
"""Finds the thumbnail of the image with the given ``width``
and/or ``height``.
:param width: the thumbnail width
:type width: :class:`numbers.Integral`
:param height: the thumbnail height
:type height: :class:`numbers.I... | python | def find_thumbnail(self, width=None, height=None):
"""Finds the thumbnail of the image with the given ``width``
and/or ``height``.
:param width: the thumbnail width
:type width: :class:`numbers.Integral`
:param height: the thumbnail height
:type height: :class:`numbers.I... | Finds the thumbnail of the image with the given ``width``
and/or ``height``.
:param width: the thumbnail width
:type width: :class:`numbers.Integral`
:param height: the thumbnail height
:type height: :class:`numbers.Integral`
:returns: the thumbnail image
:rtype:... | https://github.com/dahlia/sqlalchemy-imageattach/blob/b4bafa73f3bb576ecf67ed7b40b702704a0fbdc8/sqlalchemy_imageattach/entity.py#L871-L901 |
dahlia/sqlalchemy-imageattach | sqlalchemy_imageattach/entity.py | BaseImageSet.open_file | def open_file(self, store=current_store, use_seek=False):
"""The shorthand of :meth:`~Image.open_file()` for
the :attr:`original`.
:param store: the storage which contains the image files
:data:`~sqlalchemy_imageattach.context.current_store`
by defaul... | python | def open_file(self, store=current_store, use_seek=False):
"""The shorthand of :meth:`~Image.open_file()` for
the :attr:`original`.
:param store: the storage which contains the image files
:data:`~sqlalchemy_imageattach.context.current_store`
by defaul... | The shorthand of :meth:`~Image.open_file()` for
the :attr:`original`.
:param store: the storage which contains the image files
:data:`~sqlalchemy_imageattach.context.current_store`
by default
:type store: :class:`~sqlalchemy_imageattach.store.Store`
... | https://github.com/dahlia/sqlalchemy-imageattach/blob/b4bafa73f3bb576ecf67ed7b40b702704a0fbdc8/sqlalchemy_imageattach/entity.py#L903-L924 |
dahlia/sqlalchemy-imageattach | sqlalchemy_imageattach/entity.py | MultipleImageSet.image_sets | def image_sets(self):
"""(:class:`typing.Iterable`\ [:class:`ImageSubset`]) The set of
attached image sets.
"""
images = self._original_images()
for image in images:
yield ImageSubset(self, **image.identity_map) | python | def image_sets(self):
"""(:class:`typing.Iterable`\ [:class:`ImageSubset`]) The set of
attached image sets.
"""
images = self._original_images()
for image in images:
yield ImageSubset(self, **image.identity_map) | (:class:`typing.Iterable`\ [:class:`ImageSubset`]) The set of
attached image sets. | https://github.com/dahlia/sqlalchemy-imageattach/blob/b4bafa73f3bb576ecf67ed7b40b702704a0fbdc8/sqlalchemy_imageattach/entity.py#L1034-L1041 |
dahlia/sqlalchemy-imageattach | sqlalchemy_imageattach/stores/fs.py | HttpExposedFileSystemStore.wsgi_middleware | def wsgi_middleware(self, app, cors=False):
"""WSGI middlewares that wraps the given ``app`` and serves
actual image files. ::
fs_store = HttpExposedFileSystemStore('userimages', 'images/')
app = fs_store.wsgi_middleware(app)
:param app: the wsgi app to wrap
:ty... | python | def wsgi_middleware(self, app, cors=False):
"""WSGI middlewares that wraps the given ``app`` and serves
actual image files. ::
fs_store = HttpExposedFileSystemStore('userimages', 'images/')
app = fs_store.wsgi_middleware(app)
:param app: the wsgi app to wrap
:ty... | WSGI middlewares that wraps the given ``app`` and serves
actual image files. ::
fs_store = HttpExposedFileSystemStore('userimages', 'images/')
app = fs_store.wsgi_middleware(app)
:param app: the wsgi app to wrap
:type app: :class:`~typing.Callable`\ [[],
:cl... | https://github.com/dahlia/sqlalchemy-imageattach/blob/b4bafa73f3bb576ecf67ed7b40b702704a0fbdc8/sqlalchemy_imageattach/stores/fs.py#L215-L237 |
benmoran56/esper | esper.py | World.clear_database | def clear_database(self) -> None:
"""Remove all Entities and Components from the World."""
self._next_entity_id = 0
self._dead_entities.clear()
self._components.clear()
self._entities.clear()
self.clear_cache() | python | def clear_database(self) -> None:
"""Remove all Entities and Components from the World."""
self._next_entity_id = 0
self._dead_entities.clear()
self._components.clear()
self._entities.clear()
self.clear_cache() | Remove all Entities and Components from the World. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L46-L52 |
benmoran56/esper | esper.py | World.add_processor | def add_processor(self, processor_instance: Processor, priority=0) -> None:
"""Add a Processor instance to the World.
:param processor_instance: An instance of a Processor,
subclassed from the Processor class
:param priority: A higher number is processed first.
"""
asser... | python | def add_processor(self, processor_instance: Processor, priority=0) -> None:
"""Add a Processor instance to the World.
:param processor_instance: An instance of a Processor,
subclassed from the Processor class
:param priority: A higher number is processed first.
"""
asser... | Add a Processor instance to the World.
:param processor_instance: An instance of a Processor,
subclassed from the Processor class
:param priority: A higher number is processed first. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L54-L65 |
benmoran56/esper | esper.py | World.remove_processor | def remove_processor(self, processor_type: Processor) -> None:
"""Remove a Processor from the World, by type.
:param processor_type: The class type of the Processor to remove.
"""
for processor in self._processors:
if type(processor) == processor_type:
proces... | python | def remove_processor(self, processor_type: Processor) -> None:
"""Remove a Processor from the World, by type.
:param processor_type: The class type of the Processor to remove.
"""
for processor in self._processors:
if type(processor) == processor_type:
proces... | Remove a Processor from the World, by type.
:param processor_type: The class type of the Processor to remove. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L67-L75 |
benmoran56/esper | esper.py | World.get_processor | def get_processor(self, processor_type: Type[P]) -> P:
"""Get a Processor instance, by type.
This method returns a Processor instance by type. This could be
useful in certain situations, such as wanting to call a method on a
Processor, from within another Processor.
:param proc... | python | def get_processor(self, processor_type: Type[P]) -> P:
"""Get a Processor instance, by type.
This method returns a Processor instance by type. This could be
useful in certain situations, such as wanting to call a method on a
Processor, from within another Processor.
:param proc... | Get a Processor instance, by type.
This method returns a Processor instance by type. This could be
useful in certain situations, such as wanting to call a method on a
Processor, from within another Processor.
:param processor_type: The type of the Processor you wish to retrieve.
... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L77-L89 |
benmoran56/esper | esper.py | World.create_entity | def create_entity(self, *components) -> int:
"""Create a new Entity.
This method returns an Entity ID, which is just a plain integer.
You can optionally pass one or more Component instances to be
assigned to the Entity.
:param components: Optional components to be assigned to t... | python | def create_entity(self, *components) -> int:
"""Create a new Entity.
This method returns an Entity ID, which is just a plain integer.
You can optionally pass one or more Component instances to be
assigned to the Entity.
:param components: Optional components to be assigned to t... | Create a new Entity.
This method returns an Entity ID, which is just a plain integer.
You can optionally pass one or more Component instances to be
assigned to the Entity.
:param components: Optional components to be assigned to the
entity on creation.
:return: The next... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L91-L109 |
benmoran56/esper | esper.py | World.delete_entity | def delete_entity(self, entity: int, immediate=False) -> None:
"""Delete an Entity from the World.
Delete an Entity and all of it's assigned Component instances from
the world. By default, Entity deletion is delayed until the next call
to *World.process*. You can request immediate delet... | python | def delete_entity(self, entity: int, immediate=False) -> None:
"""Delete an Entity from the World.
Delete an Entity and all of it's assigned Component instances from
the world. By default, Entity deletion is delayed until the next call
to *World.process*. You can request immediate delet... | Delete an Entity from the World.
Delete an Entity and all of it's assigned Component instances from
the world. By default, Entity deletion is delayed until the next call
to *World.process*. You can request immediate deletion, however, by
passing the "immediate=True" parameter. This shou... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L111-L135 |
benmoran56/esper | esper.py | World.component_for_entity | def component_for_entity(self, entity: int, component_type: Type[C]) -> C:
"""Retrieve a Component instance for a specific Entity.
Retrieve a Component instance for a specific Entity. In some cases,
it may be necessary to access a specific Component instance.
For example: directly modif... | python | def component_for_entity(self, entity: int, component_type: Type[C]) -> C:
"""Retrieve a Component instance for a specific Entity.
Retrieve a Component instance for a specific Entity. In some cases,
it may be necessary to access a specific Component instance.
For example: directly modif... | Retrieve a Component instance for a specific Entity.
Retrieve a Component instance for a specific Entity. In some cases,
it may be necessary to access a specific Component instance.
For example: directly modifying a Component to handle user input.
Raises a KeyError if the given Entity ... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L137-L149 |
benmoran56/esper | esper.py | World.components_for_entity | def components_for_entity(self, entity: int) -> Tuple[C, ...]:
"""Retrieve all Components for a specific Entity, as a Tuple.
Retrieve all Components for a specific Entity. The method is probably
not appropriate to use in your Processors, but might be useful for
saving state, or passing ... | python | def components_for_entity(self, entity: int) -> Tuple[C, ...]:
"""Retrieve all Components for a specific Entity, as a Tuple.
Retrieve all Components for a specific Entity. The method is probably
not appropriate to use in your Processors, but might be useful for
saving state, or passing ... | Retrieve all Components for a specific Entity, as a Tuple.
Retrieve all Components for a specific Entity. The method is probably
not appropriate to use in your Processors, but might be useful for
saving state, or passing specific Components between World instances.
Unlike most other met... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L151-L165 |
benmoran56/esper | esper.py | World.has_component | def has_component(self, entity: int, component_type: Any) -> bool:
"""Check if a specific Entity has a Component of a certain type.
:param entity: The Entity you are querying.
:param component_type: The type of Component to check for.
:return: True if the Entity has a Component of this ... | python | def has_component(self, entity: int, component_type: Any) -> bool:
"""Check if a specific Entity has a Component of a certain type.
:param entity: The Entity you are querying.
:param component_type: The type of Component to check for.
:return: True if the Entity has a Component of this ... | Check if a specific Entity has a Component of a certain type.
:param entity: The Entity you are querying.
:param component_type: The type of Component to check for.
:return: True if the Entity has a Component of this type,
otherwise False | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L167-L175 |
benmoran56/esper | esper.py | World.add_component | def add_component(self, entity: int, component_instance: Any) -> None:
"""Add a new Component instance to an Entity.
Add a Component instance to an Entiy. If a Component of the same type
is already assigned to the Entity, it will be replaced.
:param entity: The Entity to associate the ... | python | def add_component(self, entity: int, component_instance: Any) -> None:
"""Add a new Component instance to an Entity.
Add a Component instance to an Entiy. If a Component of the same type
is already assigned to the Entity, it will be replaced.
:param entity: The Entity to associate the ... | Add a new Component instance to an Entity.
Add a Component instance to an Entiy. If a Component of the same type
is already assigned to the Entity, it will be replaced.
:param entity: The Entity to associate the Component with.
:param component_instance: A Component instance. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L177-L197 |
benmoran56/esper | esper.py | World.remove_component | def remove_component(self, entity: int, component_type: Any) -> int:
"""Remove a Component instance from an Entity, by type.
A Component instance can be removed by providing it's type.
For example: world.delete_component(enemy_a, Velocity) will remove
the Velocity instance from the Enti... | python | def remove_component(self, entity: int, component_type: Any) -> int:
"""Remove a Component instance from an Entity, by type.
A Component instance can be removed by providing it's type.
For example: world.delete_component(enemy_a, Velocity) will remove
the Velocity instance from the Enti... | Remove a Component instance from an Entity, by type.
A Component instance can be removed by providing it's type.
For example: world.delete_component(enemy_a, Velocity) will remove
the Velocity instance from the Entity enemy_a.
Raises a KeyError if either the given entity or Component t... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L199-L222 |
benmoran56/esper | esper.py | World._get_component | def _get_component(self, component_type: Type[C]) -> Iterable[Tuple[int, C]]:
"""Get an iterator for Entity, Component pairs.
:param component_type: The Component type to retrieve.
:return: An iterator for (Entity, Component) tuples.
"""
entity_db = self._entities
for e... | python | def _get_component(self, component_type: Type[C]) -> Iterable[Tuple[int, C]]:
"""Get an iterator for Entity, Component pairs.
:param component_type: The Component type to retrieve.
:return: An iterator for (Entity, Component) tuples.
"""
entity_db = self._entities
for e... | Get an iterator for Entity, Component pairs.
:param component_type: The Component type to retrieve.
:return: An iterator for (Entity, Component) tuples. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L224-L233 |
benmoran56/esper | esper.py | World._get_components | def _get_components(self, *component_types: Type)-> Iterable[Tuple[int, ...]]:
"""Get an iterator for Entity and multiple Component sets.
:param component_types: Two or more Component types.
:return: An iterator for Entity, (Component1, Component2, etc)
tuples.
"""
entit... | python | def _get_components(self, *component_types: Type)-> Iterable[Tuple[int, ...]]:
"""Get an iterator for Entity and multiple Component sets.
:param component_types: Two or more Component types.
:return: An iterator for Entity, (Component1, Component2, etc)
tuples.
"""
entit... | Get an iterator for Entity and multiple Component sets.
:param component_types: Two or more Component types.
:return: An iterator for Entity, (Component1, Component2, etc)
tuples. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L235-L249 |
benmoran56/esper | esper.py | World.try_component | def try_component(self, entity: int, component_type: Type):
"""Try to get a single component type for an Entity.
This method will return the requested Component if it exists, but
will pass silently if it does not. This allows a way to access optional
Componen... | python | def try_component(self, entity: int, component_type: Type):
"""Try to get a single component type for an Entity.
This method will return the requested Component if it exists, but
will pass silently if it does not. This allows a way to access optional
Componen... | Try to get a single component type for an Entity.
This method will return the requested Component if it exists, but
will pass silently if it does not. This allows a way to access optional
Components that may or may not exist.
:param entity: The Entity ID to ... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L259-L274 |
benmoran56/esper | esper.py | World._clear_dead_entities | def _clear_dead_entities(self):
"""Finalize deletion of any Entities that are marked dead.
In the interest of performance, this method duplicates code from the
`delete_entity` method. If that method is changed, those changes should
be duplicated here as well.
"""
... | python | def _clear_dead_entities(self):
"""Finalize deletion of any Entities that are marked dead.
In the interest of performance, this method duplicates code from the
`delete_entity` method. If that method is changed, those changes should
be duplicated here as well.
"""
... | Finalize deletion of any Entities that are marked dead.
In the interest of performance, this method duplicates code from the
`delete_entity` method. If that method is changed, those changes should
be duplicated here as well. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L276-L294 |
benmoran56/esper | esper.py | World._timed_process | def _timed_process(self, *args, **kwargs):
"""Track Processor execution time for benchmarking."""
for processor in self._processors:
start_time = _time.process_time()
processor.process(*args, **kwargs)
process_time = int(round((_time.process_time() - start_time) * 100... | python | def _timed_process(self, *args, **kwargs):
"""Track Processor execution time for benchmarking."""
for processor in self._processors:
start_time = _time.process_time()
processor.process(*args, **kwargs)
process_time = int(round((_time.process_time() - start_time) * 100... | Track Processor execution time for benchmarking. | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L300-L306 |
benmoran56/esper | esper.py | World.process | def process(self, *args, **kwargs):
"""Call the process method on all Processors, in order of their priority.
Call the *process* method on all assigned Processors, respecting their
optional priority setting. In addition, any Entities that were marked
for deletion since the last call to ... | python | def process(self, *args, **kwargs):
"""Call the process method on all Processors, in order of their priority.
Call the *process* method on all assigned Processors, respecting their
optional priority setting. In addition, any Entities that were marked
for deletion since the last call to ... | Call the process method on all Processors, in order of their priority.
Call the *process* method on all assigned Processors, respecting their
optional priority setting. In addition, any Entities that were marked
for deletion since the last call to *World.process*, will be deleted
at the... | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/esper.py#L308-L320 |
benmoran56/esper | examples/pysdl2_example.py | texture_from_image | def texture_from_image(renderer, image_name):
"""Create an SDL2 Texture from an image file"""
soft_surface = ext.load_image(image_name)
texture = SDL_CreateTextureFromSurface(renderer.renderer, soft_surface)
SDL_FreeSurface(soft_surface)
return texture | python | def texture_from_image(renderer, image_name):
"""Create an SDL2 Texture from an image file"""
soft_surface = ext.load_image(image_name)
texture = SDL_CreateTextureFromSurface(renderer.renderer, soft_surface)
SDL_FreeSurface(soft_surface)
return texture | Create an SDL2 Texture from an image file | https://github.com/benmoran56/esper/blob/5b6cd0c51718d5dcfa0e5613f824b5251cf092ac/examples/pysdl2_example.py#L76-L81 |
sdss/tree | tasks.py | setup_tree | def setup_tree(ctx, verbose=None, root=None, tree_dir=None, modules_dir=None):
''' Sets up the SDSS tree enviroment '''
print('Setting up the tree')
ctx.run('python bin/setup_tree.py -t {0} -r {1} -m {2}'.format(tree_dir, root, modules_dir)) | python | def setup_tree(ctx, verbose=None, root=None, tree_dir=None, modules_dir=None):
''' Sets up the SDSS tree enviroment '''
print('Setting up the tree')
ctx.run('python bin/setup_tree.py -t {0} -r {1} -m {2}'.format(tree_dir, root, modules_dir)) | Sets up the SDSS tree enviroment | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/tasks.py#L61-L64 |
sdss/tree | python/tree/tree.py | Tree.set_roots | def set_roots(self, uproot_with=None):
''' Set the roots of the tree in the os environment
Parameters:
uproot_with (str):
A new TREE_DIR path used to override an existing TREE_DIR environment variable
'''
# Check for TREE_DIR
self.treedir = os.envir... | python | def set_roots(self, uproot_with=None):
''' Set the roots of the tree in the os environment
Parameters:
uproot_with (str):
A new TREE_DIR path used to override an existing TREE_DIR environment variable
'''
# Check for TREE_DIR
self.treedir = os.envir... | Set the roots of the tree in the os environment
Parameters:
uproot_with (str):
A new TREE_DIR path used to override an existing TREE_DIR environment variable | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L75-L103 |
sdss/tree | python/tree/tree.py | Tree.load_config | def load_config(self, config=None):
''' loads a config file
Parameters:
config (str):
Optional name of manual config file to load
'''
# Read the config file
cfgname = (config or self.config_name)
cfgname = 'sdsswork' if cfgname is None else c... | python | def load_config(self, config=None):
''' loads a config file
Parameters:
config (str):
Optional name of manual config file to load
'''
# Read the config file
cfgname = (config or self.config_name)
cfgname = 'sdsswork' if cfgname is None else c... | loads a config file
Parameters:
config (str):
Optional name of manual config file to load | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L105-L135 |
sdss/tree | python/tree/tree.py | Tree.branch_out | def branch_out(self, limb=None):
''' Set the individual section branches
This adds the various sections of the config file into the
tree environment for access later. Optically can specify a specific
branch. This does not yet load them into the os environment.
Parameters:
... | python | def branch_out(self, limb=None):
''' Set the individual section branches
This adds the various sections of the config file into the
tree environment for access later. Optically can specify a specific
branch. This does not yet load them into the os environment.
Parameters:
... | Set the individual section branches
This adds the various sections of the config file into the
tree environment for access later. Optically can specify a specific
branch. This does not yet load them into the os environment.
Parameters:
limb (str/list):
The ... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L137-L172 |
sdss/tree | python/tree/tree.py | Tree.add_limbs | def add_limbs(self, key=None):
''' Add a new section from the tree into the existing os environment
Parameters:
key (str):
The section name to grab from the environment
'''
self.branch_out(limb=key)
self.add_paths_to_os(key=key) | python | def add_limbs(self, key=None):
''' Add a new section from the tree into the existing os environment
Parameters:
key (str):
The section name to grab from the environment
'''
self.branch_out(limb=key)
self.add_paths_to_os(key=key) | Add a new section from the tree into the existing os environment
Parameters:
key (str):
The section name to grab from the environment | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L174-L183 |
sdss/tree | python/tree/tree.py | Tree.get_paths | def get_paths(self, key):
''' Retrieve a set of environment paths from the config
Parameters:
key (str):
The section name to grab from the environment
Returns:
self.environ[newkey] (OrderedDict):
An ordered dict containing all of the path... | python | def get_paths(self, key):
''' Retrieve a set of environment paths from the config
Parameters:
key (str):
The section name to grab from the environment
Returns:
self.environ[newkey] (OrderedDict):
An ordered dict containing all of the path... | Retrieve a set of environment paths from the config
Parameters:
key (str):
The section name to grab from the environment
Returns:
self.environ[newkey] (OrderedDict):
An ordered dict containing all of the paths from the
specified s... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L185-L202 |
sdss/tree | python/tree/tree.py | Tree.add_paths_to_os | def add_paths_to_os(self, key=None, update=None):
''' Add the paths in tree environ into the os environ
This code goes through the tree environ and checks
for existence in the os environ, then adds them
Parameters:
key (str):
The section name to check agains... | python | def add_paths_to_os(self, key=None, update=None):
''' Add the paths in tree environ into the os environ
This code goes through the tree environ and checks
for existence in the os environ, then adds them
Parameters:
key (str):
The section name to check agains... | Add the paths in tree environ into the os environ
This code goes through the tree environ and checks
for existence in the os environ, then adds them
Parameters:
key (str):
The section name to check against / add
update (bool):
If True, ov... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L204-L225 |
sdss/tree | python/tree/tree.py | Tree.check_paths | def check_paths(self, paths, update=None):
''' Check if the path is in the os environ, and if not add it
Paramters:
paths (OrderedDict):
An ordered dict containing all of the paths from the
a given section, as key:val = name:path
update (bool):
... | python | def check_paths(self, paths, update=None):
''' Check if the path is in the os environ, and if not add it
Paramters:
paths (OrderedDict):
An ordered dict containing all of the paths from the
a given section, as key:val = name:path
update (bool):
... | Check if the path is in the os environ, and if not add it
Paramters:
paths (OrderedDict):
An ordered dict containing all of the paths from the
a given section, as key:val = name:path
update (bool):
If True, overwrites existing tree environ... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L227-L248 |
sdss/tree | python/tree/tree.py | Tree.replant_tree | def replant_tree(self, config=None, exclude=None):
''' Replant the tree with a different config setup
Parameters:
config (str):
The config name to reload
exclude (list):
A list of environment variables to exclude
from forced update... | python | def replant_tree(self, config=None, exclude=None):
''' Replant the tree with a different config setup
Parameters:
config (str):
The config name to reload
exclude (list):
A list of environment variables to exclude
from forced update... | Replant the tree with a different config setup
Parameters:
config (str):
The config name to reload
exclude (list):
A list of environment variables to exclude
from forced updates | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/tree.py#L250-L262 |
sdss/tree | python/tree/misc/logger.py | print_exception_formatted | def print_exception_formatted(type, value, tb):
"""A custom hook for printing tracebacks with colours."""
tbtext = ''.join(traceback.format_exception(type, value, tb))
lexer = get_lexer_by_name('pytb', stripall=True)
formatter = TerminalFormatter()
sys.stderr.write(highlight(tbtext, lexer, formatte... | python | def print_exception_formatted(type, value, tb):
"""A custom hook for printing tracebacks with colours."""
tbtext = ''.join(traceback.format_exception(type, value, tb))
lexer = get_lexer_by_name('pytb', stripall=True)
formatter = TerminalFormatter()
sys.stderr.write(highlight(tbtext, lexer, formatte... | A custom hook for printing tracebacks with colours. | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/logger.py#L49-L55 |
sdss/tree | python/tree/misc/logger.py | colored_formatter | def colored_formatter(record):
"""Prints log messages with colours."""
colours = {'info': ('blue', 'normal'),
'debug': ('magenta', 'normal'),
'warning': ('yellow', 'normal'),
'print': ('green', 'normal'),
'error': ('red', 'bold')}
levelname = rec... | python | def colored_formatter(record):
"""Prints log messages with colours."""
colours = {'info': ('blue', 'normal'),
'debug': ('magenta', 'normal'),
'warning': ('yellow', 'normal'),
'print': ('green', 'normal'),
'error': ('red', 'bold')}
levelname = rec... | Prints log messages with colours. | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/logger.py#L58-L98 |
sdss/tree | python/tree/misc/logger.py | MyLogger._catch_exceptions | def _catch_exceptions(self, exctype, value, tb):
"""Catches all exceptions and logs them."""
# Now we log it.
self.error('Uncaught exception', exc_info=(exctype, value, tb))
# First, we print to stdout with some colouring.
print_exception_formatted(exctype, value, tb) | python | def _catch_exceptions(self, exctype, value, tb):
"""Catches all exceptions and logs them."""
# Now we log it.
self.error('Uncaught exception', exc_info=(exctype, value, tb))
# First, we print to stdout with some colouring.
print_exception_formatted(exctype, value, tb) | Catches all exceptions and logs them. | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/logger.py#L205-L212 |
sdss/tree | python/tree/misc/logger.py | MyLogger._set_defaults | def _set_defaults(self, log_level=logging.INFO, redirect_stdout=False):
"""Reset logger to its initial state."""
# Remove all previous handlers
for handler in self.handlers[:]:
self.removeHandler(handler)
# Set levels
self.setLevel(logging.DEBUG)
# Set up t... | python | def _set_defaults(self, log_level=logging.INFO, redirect_stdout=False):
"""Reset logger to its initial state."""
# Remove all previous handlers
for handler in self.handlers[:]:
self.removeHandler(handler)
# Set levels
self.setLevel(logging.DEBUG)
# Set up t... | Reset logger to its initial state. | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/logger.py#L214-L239 |
sdss/tree | python/tree/misc/logger.py | MyLogger.start_file_logger | def start_file_logger(self, name, log_file_level=logging.DEBUG, log_file_path='./'):
"""Start file logging."""
log_file_path = os.path.expanduser(log_file_path) / '{}.log'.format(name)
logdir = log_file_path.parent
try:
logdir.mkdir(parents=True, exist_ok=True)
... | python | def start_file_logger(self, name, log_file_level=logging.DEBUG, log_file_path='./'):
"""Start file logging."""
log_file_path = os.path.expanduser(log_file_path) / '{}.log'.format(name)
logdir = log_file_path.parent
try:
logdir.mkdir(parents=True, exist_ok=True)
... | Start file logging. | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/logger.py#L241-L265 |
sdss/tree | bin/setup_tree.py | create_index_table | def create_index_table(environ, envdir):
''' create an html table
Parameters:
environ (dict):
A tree environment dictionary
envdir (str):
The filepath for the env directory
Returns:
An html table definition string
'''
table_header = """<table id=... | python | def create_index_table(environ, envdir):
''' create an html table
Parameters:
environ (dict):
A tree environment dictionary
envdir (str):
The filepath for the env directory
Returns:
An html table definition string
'''
table_header = """<table id=... | create an html table
Parameters:
environ (dict):
A tree environment dictionary
envdir (str):
The filepath for the env directory
Returns:
An html table definition string | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L44-L110 |
sdss/tree | bin/setup_tree.py | create_index_page | def create_index_page(environ, defaults, envdir):
''' create the env index html page
Builds the index.html page containing a table of symlinks
to datamodel directories
Parameters:
environ (dict):
A tree environment dictionary
defaults (dict):
The defaults di... | python | def create_index_page(environ, defaults, envdir):
''' create the env index html page
Builds the index.html page containing a table of symlinks
to datamodel directories
Parameters:
environ (dict):
A tree environment dictionary
defaults (dict):
The defaults di... | create the env index html page
Builds the index.html page containing a table of symlinks
to datamodel directories
Parameters:
environ (dict):
A tree environment dictionary
defaults (dict):
The defaults dictionary from environ['default']
envdir (str):
... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L113-L153 |
sdss/tree | bin/setup_tree.py | create_env | def create_env(environ, mirror=None, verbose=None):
''' create the env symlink directory structure
Creates the env folder filled with symlinks to datamodel directories
for a given tree config file.
Parameters:
environ (dict):
A tree environment dictionary
mirror (bool... | python | def create_env(environ, mirror=None, verbose=None):
''' create the env symlink directory structure
Creates the env folder filled with symlinks to datamodel directories
for a given tree config file.
Parameters:
environ (dict):
A tree environment dictionary
mirror (bool... | create the env symlink directory structure
Creates the env folder filled with symlinks to datamodel directories
for a given tree config file.
Parameters:
environ (dict):
A tree environment dictionary
mirror (bool):
If True, use the SAM url location
ver... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L156-L196 |
sdss/tree | bin/setup_tree.py | check_sas_base_dir | def check_sas_base_dir(root=None):
''' Check for the SAS_BASE_DIR environment variable
Will set the SAS_BASE_DIR in your local environment
or prompt you to define one if is undefined
Parameters:
root (str):
Optional override of the SAS_BASE_DIR envvar
'''
sasbasedir = root... | python | def check_sas_base_dir(root=None):
''' Check for the SAS_BASE_DIR environment variable
Will set the SAS_BASE_DIR in your local environment
or prompt you to define one if is undefined
Parameters:
root (str):
Optional override of the SAS_BASE_DIR envvar
'''
sasbasedir = root... | Check for the SAS_BASE_DIR environment variable
Will set the SAS_BASE_DIR in your local environment
or prompt you to define one if is undefined
Parameters:
root (str):
Optional override of the SAS_BASE_DIR envvar | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L199-L213 |
sdss/tree | bin/setup_tree.py | write_header | def write_header(term='bash', tree_dir=None, name=None):
''' Write proper file header in a given shell format
Parameters:
term (str):
The type of shell header to write, can be "bash", "tsch", or "modules"
tree_dir (str):
The path to this repository
name (str):
... | python | def write_header(term='bash', tree_dir=None, name=None):
''' Write proper file header in a given shell format
Parameters:
term (str):
The type of shell header to write, can be "bash", "tsch", or "modules"
tree_dir (str):
The path to this repository
name (str):
... | Write proper file header in a given shell format
Parameters:
term (str):
The type of shell header to write, can be "bash", "tsch", or "modules"
tree_dir (str):
The path to this repository
name (str):
The name of the configuration
Returns:
A s... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L216-L263 |
sdss/tree | bin/setup_tree.py | write_file | def write_file(environ, term='bash', out_dir=None, tree_dir=None):
''' Write a tree environment file
Loops over the tree environ and writes them out to a bash, tsch, or
modules file
Parameters:
environ (dict):
The tree dictionary environment
term (str):
The type... | python | def write_file(environ, term='bash', out_dir=None, tree_dir=None):
''' Write a tree environment file
Loops over the tree environ and writes them out to a bash, tsch, or
modules file
Parameters:
environ (dict):
The tree dictionary environment
term (str):
The type... | Write a tree environment file
Loops over the tree environ and writes them out to a bash, tsch, or
modules file
Parameters:
environ (dict):
The tree dictionary environment
term (str):
The type of shell header to write, can be "bash", "tsch", or "modules"
tree... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L272-L319 |
sdss/tree | bin/setup_tree.py | get_tree | def get_tree(config=None):
''' Get the tree for a given config
Parameters:
config (str):
The name of the tree config to load
Returns:
a Python Tree instance
'''
path = os.path.dirname(os.path.abspath(__file__))
pypath = os.path.realpath(os.path.join(path, '..', 'pyt... | python | def get_tree(config=None):
''' Get the tree for a given config
Parameters:
config (str):
The name of the tree config to load
Returns:
a Python Tree instance
'''
path = os.path.dirname(os.path.abspath(__file__))
pypath = os.path.realpath(os.path.join(path, '..', 'pyt... | Get the tree for a given config
Parameters:
config (str):
The name of the tree config to load
Returns:
a Python Tree instance | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L322-L339 |
sdss/tree | bin/setup_tree.py | copy_modules | def copy_modules(filespath=None, modules_path=None, verbose=None):
''' Copy over the tree module files into your path '''
# find or define a modules path
if not modules_path:
modulepath = os.getenv("MODULEPATH")
if not modulepath:
modules_path = input('Enter the root path for yo... | python | def copy_modules(filespath=None, modules_path=None, verbose=None):
''' Copy over the tree module files into your path '''
# find or define a modules path
if not modules_path:
modulepath = os.getenv("MODULEPATH")
if not modulepath:
modules_path = input('Enter the root path for yo... | Copy over the tree module files into your path | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L342-L380 |
sdss/tree | bin/setup_tree.py | parse_args | def parse_args():
''' Parse the arguments '''
parser = argparse.ArgumentParser(prog='setup_tree_modules', usage='%(prog)s [opts]')
parser.add_argument('-v', '--verbose', action='store_true', dest='verbose',
help='Print extra information.', default=False)
parser.add_argument('-r'... | python | def parse_args():
''' Parse the arguments '''
parser = argparse.ArgumentParser(prog='setup_tree_modules', usage='%(prog)s [opts]')
parser.add_argument('-v', '--verbose', action='store_true', dest='verbose',
help='Print extra information.', default=False)
parser.add_argument('-r'... | Parse the arguments | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/bin/setup_tree.py#L383-L404 |
sdss/tree | python/tree/misc/docutree.py | _indent | def _indent(text, level=1):
''' Does a proper indenting for Sphinx rst '''
prefix = ' ' * (4 * level)
def prefixed_lines():
for line in text.splitlines(True):
yield (prefix + line if line.strip() else line)
return ''.join(prefixed_lines()) | python | def _indent(text, level=1):
''' Does a proper indenting for Sphinx rst '''
prefix = ' ' * (4 * level)
def prefixed_lines():
for line in text.splitlines(True):
yield (prefix + line if line.strip() else line)
return ''.join(prefixed_lines()) | Does a proper indenting for Sphinx rst | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/docutree.py#L22-L31 |
sdss/tree | python/tree/misc/docutree.py | _format_command | def _format_command(name, envvars, base=None):
''' Creates a list-table directive
for a set of defined environment variables
Parameters:
name (str):
The name of the config section
envvars (dict):
A dictionary of the environment variable definitions from the config
... | python | def _format_command(name, envvars, base=None):
''' Creates a list-table directive
for a set of defined environment variables
Parameters:
name (str):
The name of the config section
envvars (dict):
A dictionary of the environment variable definitions from the config
... | Creates a list-table directive
for a set of defined environment variables
Parameters:
name (str):
The name of the config section
envvars (dict):
A dictionary of the environment variable definitions from the config
base (str):
The SAS_BASE to remove f... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/docutree.py#L34-L63 |
sdss/tree | python/tree/misc/docutree.py | TreeDirective._generate_section | def _generate_section(self, name, config, cfg_section='default', remove_sasbase=False):
"""Generate the relevant Sphinx nodes.
Generates a section for the Tree datamodel. Formats a tree section
as a list-table directive.
Parameters:
name (str):
The name of ... | python | def _generate_section(self, name, config, cfg_section='default', remove_sasbase=False):
"""Generate the relevant Sphinx nodes.
Generates a section for the Tree datamodel. Formats a tree section
as a list-table directive.
Parameters:
name (str):
The name of ... | Generate the relevant Sphinx nodes.
Generates a section for the Tree datamodel. Formats a tree section
as a list-table directive.
Parameters:
name (str):
The name of the config to be documented, e.g. 'sdsswork'
config (dict):
The tree di... | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/python/tree/misc/docutree.py#L105-L145 |
sdss/tree | setup.py | get_requirements | def get_requirements(opts):
''' Get the proper requirements file based on the optional argument '''
if opts.dev:
name = 'requirements_dev.txt'
elif opts.doc:
name = 'requirements_doc.txt'
else:
name = 'requirements.txt'
requirements_file = os.path.join(os.path.dirname(__fil... | python | def get_requirements(opts):
''' Get the proper requirements file based on the optional argument '''
if opts.dev:
name = 'requirements_dev.txt'
elif opts.doc:
name = 'requirements_doc.txt'
else:
name = 'requirements.txt'
requirements_file = os.path.join(os.path.dirname(__fil... | Get the proper requirements file based on the optional argument | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/setup.py#L54-L67 |
sdss/tree | setup.py | remove_args | def remove_args(parser):
''' Remove custom arguments from the parser '''
arguments = []
for action in list(parser._get_optional_actions()):
if '--help' not in action.option_strings:
arguments += action.option_strings
for arg in arguments:
if arg in sys.argv:
sys... | python | def remove_args(parser):
''' Remove custom arguments from the parser '''
arguments = []
for action in list(parser._get_optional_actions()):
if '--help' not in action.option_strings:
arguments += action.option_strings
for arg in arguments:
if arg in sys.argv:
sys... | Remove custom arguments from the parser | https://github.com/sdss/tree/blob/f61fe0876c138ccb61874912d4b8590dadfa835c/setup.py#L70-L80 |
sarugaku/shellingham | tasks/__init__.py | clean | def clean(ctx):
"""Clean previously built package artifacts.
"""
ctx.run(f'python setup.py clean')
dist = ROOT.joinpath('dist')
print(f'[clean] Removing {dist}')
if dist.exists():
shutil.rmtree(str(dist)) | python | def clean(ctx):
"""Clean previously built package artifacts.
"""
ctx.run(f'python setup.py clean')
dist = ROOT.joinpath('dist')
print(f'[clean] Removing {dist}')
if dist.exists():
shutil.rmtree(str(dist)) | Clean previously built package artifacts. | https://github.com/sarugaku/shellingham/blob/295fc3094ef05437597ea0baa02f5cd7a3335d28/tasks/__init__.py#L20-L27 |
sarugaku/shellingham | tasks/__init__.py | _render_log | def _render_log():
"""Totally tap into Towncrier internals to get an in-memory result.
"""
config = load_config(ROOT)
definitions = config['types']
fragments, fragment_filenames = find_fragments(
pathlib.Path(config['directory']).absolute(),
config['sections'],
None,
... | python | def _render_log():
"""Totally tap into Towncrier internals to get an in-memory result.
"""
config = load_config(ROOT)
definitions = config['types']
fragments, fragment_filenames = find_fragments(
pathlib.Path(config['directory']).absolute(),
config['sections'],
None,
... | Totally tap into Towncrier internals to get an in-memory result. | https://github.com/sarugaku/shellingham/blob/295fc3094ef05437597ea0baa02f5cd7a3335d28/tasks/__init__.py#L49-L67 |
sods/paramz | paramz/core/nameable.py | adjust_name_for_printing | def adjust_name_for_printing(name):
"""
Make sure a name can be printed, alongside used as a variable name.
"""
if name is not None:
name2 = name
name = name.replace(" ", "_").replace(".", "_").replace("-", "_m_")
name = name.replace("+", "_p_").replace("!", "_I_")
name =... | python | def adjust_name_for_printing(name):
"""
Make sure a name can be printed, alongside used as a variable name.
"""
if name is not None:
name2 = name
name = name.replace(" ", "_").replace(".", "_").replace("-", "_m_")
name = name.replace("+", "_p_").replace("!", "_I_")
name =... | Make sure a name can be printed, alongside used as a variable name. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/nameable.py#L33-L47 |
sods/paramz | paramz/core/nameable.py | Nameable.name | def name(self, name):
"""
Set the name of this object.
Tell the parent if the name has changed.
"""
from_name = self.name
assert isinstance(name, str)
self._name = name
if self.has_parent():
self._parent_._name_changed(self, from_name) | python | def name(self, name):
"""
Set the name of this object.
Tell the parent if the name has changed.
"""
from_name = self.name
assert isinstance(name, str)
self._name = name
if self.has_parent():
self._parent_._name_changed(self, from_name) | Set the name of this object.
Tell the parent if the name has changed. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/nameable.py#L65-L74 |
sods/paramz | paramz/core/nameable.py | Nameable.hierarchy_name | def hierarchy_name(self, adjust_for_printing=True):
"""
return the name for this object with the parents names attached by dots.
:param bool adjust_for_printing: whether to call :func:`~adjust_for_printing()`
on the names, recursively
... | python | def hierarchy_name(self, adjust_for_printing=True):
"""
return the name for this object with the parents names attached by dots.
:param bool adjust_for_printing: whether to call :func:`~adjust_for_printing()`
on the names, recursively
... | return the name for this object with the parents names attached by dots.
:param bool adjust_for_printing: whether to call :func:`~adjust_for_printing()`
on the names, recursively | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/nameable.py#L76-L88 |
sods/paramz | paramz/parameterized.py | Parameterized.link_parameter | def link_parameter(self, param, index=None):
"""
:param parameters: the parameters to add
:type parameters: list of or one :py:class:`paramz.param.Param`
:param [index]: index of where to put parameters
Add all parameters to this param class, you can insert parameters
... | python | def link_parameter(self, param, index=None):
"""
:param parameters: the parameters to add
:type parameters: list of or one :py:class:`paramz.param.Param`
:param [index]: index of where to put parameters
Add all parameters to this param class, you can insert parameters
... | :param parameters: the parameters to add
:type parameters: list of or one :py:class:`paramz.param.Param`
:param [index]: index of where to put parameters
Add all parameters to this param class, you can insert parameters
at any given index using the :func:`list.insert` syntax | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/parameterized.py#L128-L186 |
sods/paramz | paramz/parameterized.py | Parameterized.unlink_parameter | def unlink_parameter(self, param):
"""
:param param: param object to remove from being a parameter of this parameterized object.
"""
if not param in self.parameters:
try:
raise HierarchyError("{} does not belong to this object {}, remove parameters directly fr... | python | def unlink_parameter(self, param):
"""
:param param: param object to remove from being a parameter of this parameterized object.
"""
if not param in self.parameters:
try:
raise HierarchyError("{} does not belong to this object {}, remove parameters directly fr... | :param param: param object to remove from being a parameter of this parameterized object. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/parameterized.py#L195-L226 |
sods/paramz | paramz/parameterized.py | Parameterized.grep_param_names | def grep_param_names(self, regexp):
"""
create a list of parameters, matching regular expression regexp
"""
if not isinstance(regexp, _pattern_type): regexp = compile(regexp)
found_params = []
def visit(innerself, regexp):
if (innerself is not self) and regexp... | python | def grep_param_names(self, regexp):
"""
create a list of parameters, matching regular expression regexp
"""
if not isinstance(regexp, _pattern_type): regexp = compile(regexp)
found_params = []
def visit(innerself, regexp):
if (innerself is not self) and regexp... | create a list of parameters, matching regular expression regexp | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/parameterized.py#L282-L292 |
sods/paramz | paramz/parameterized.py | Parameterized._repr_html_ | def _repr_html_(self, header=True):
"""Representation of the parameters in html for notebook display."""
name = adjust_name_for_printing(self.name) + "."
names = self.parameter_names()
desc = self._description_str
iops = OrderedDict()
for opname in self._index_operations:... | python | def _repr_html_(self, header=True):
"""Representation of the parameters in html for notebook display."""
name = adjust_name_for_printing(self.name) + "."
names = self.parameter_names()
desc = self._description_str
iops = OrderedDict()
for opname in self._index_operations:... | Representation of the parameters in html for notebook display. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/parameterized.py#L382-L412 |
sods/paramz | paramz/parameterized.py | Parameterized.build_pydot | def build_pydot(self, G=None): # pragma: no cover
"""
Build a pydot representation of this model. This needs pydot installed.
Example Usage::
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta... | python | def build_pydot(self, G=None): # pragma: no cover
"""
Build a pydot representation of this model. This needs pydot installed.
Example Usage::
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta... | Build a pydot representation of this model. This needs pydot installed.
Example Usage::
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta)
m = RidgeRegression(X, Y)
G = m.build_pydot(... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/parameterized.py#L450-L501 |
sods/paramz | paramz/param.py | Param.gradient | def gradient(self):
"""
Return a view on the gradient, which is in the same shape as this parameter is.
Note: this is not the real gradient array, it is just a view on it.
To work on the real gradient array use: self.full_gradient
"""
if getattr(self, '_gradient_array_',... | python | def gradient(self):
"""
Return a view on the gradient, which is in the same shape as this parameter is.
Note: this is not the real gradient array, it is just a view on it.
To work on the real gradient array use: self.full_gradient
"""
if getattr(self, '_gradient_array_',... | Return a view on the gradient, which is in the same shape as this parameter is.
Note: this is not the real gradient array, it is just a view on it.
To work on the real gradient array use: self.full_gradient | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/param.py#L139-L148 |
sods/paramz | paramz/param.py | Param._setup_observers | def _setup_observers(self):
"""
Setup the default observers
1: pass through to parent, if present
"""
if self.has_parent():
self.add_observer(self._parent_, self._parent_._pass_through_notify_observers, -np.inf) | python | def _setup_observers(self):
"""
Setup the default observers
1: pass through to parent, if present
"""
if self.has_parent():
self.add_observer(self._parent_, self._parent_._pass_through_notify_observers, -np.inf) | Setup the default observers
1: pass through to parent, if present | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/param.py#L211-L218 |
sods/paramz | paramz/param.py | Param._repr_html_ | def _repr_html_(self, indices=None, iops=None, lx=None, li=None, lls=None):
"""Representation of the parameter in html for notebook display."""
filter_ = self._current_slice_
vals = self.flat
if indices is None: indices = self._indices(filter_)
if iops is None:
ravi =... | python | def _repr_html_(self, indices=None, iops=None, lx=None, li=None, lls=None):
"""Representation of the parameter in html for notebook display."""
filter_ = self._current_slice_
vals = self.flat
if indices is None: indices = self._indices(filter_)
if iops is None:
ravi =... | Representation of the parameter in html for notebook display. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/param.py#L275-L311 |
sods/paramz | paramz/param.py | Param.build_pydot | def build_pydot(self,G): # pragma: no cover
"""
Build a pydot representation of this model. This needs pydot installed.
Example Usage:
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta)
m = RidgeRegr... | python | def build_pydot(self,G): # pragma: no cover
"""
Build a pydot representation of this model. This needs pydot installed.
Example Usage:
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta)
m = RidgeRegr... | Build a pydot representation of this model. This needs pydot installed.
Example Usage:
np.random.seed(1000)
X = np.random.normal(0,1,(20,2))
beta = np.random.uniform(0,1,(2,1))
Y = X.dot(beta)
m = RidgeRegression(X, Y)
G = m.build_pydot()
G.write_png('ex... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/param.py#L349-L389 |
sods/paramz | paramz/core/observable.py | Observable.add_observer | def add_observer(self, observer, callble, priority=0):
"""
Add an observer `observer` with the callback `callble`
and priority `priority` to this observers list.
"""
self.observers.add(priority, observer, callble) | python | def add_observer(self, observer, callble, priority=0):
"""
Add an observer `observer` with the callback `callble`
and priority `priority` to this observers list.
"""
self.observers.add(priority, observer, callble) | Add an observer `observer` with the callback `callble`
and priority `priority` to this observers list. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/observable.py#L49-L54 |
sods/paramz | paramz/core/observable.py | Observable.remove_observer | def remove_observer(self, observer, callble=None):
"""
Either (if callble is None) remove all callables,
which were added alongside observer,
or remove callable `callble` which was added alongside
the observer `observer`.
"""
to_remove = []
for poc in self... | python | def remove_observer(self, observer, callble=None):
"""
Either (if callble is None) remove all callables,
which were added alongside observer,
or remove callable `callble` which was added alongside
the observer `observer`.
"""
to_remove = []
for poc in self... | Either (if callble is None) remove all callables,
which were added alongside observer,
or remove callable `callble` which was added alongside
the observer `observer`. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/observable.py#L56-L73 |
sods/paramz | paramz/core/observable.py | Observable.notify_observers | def notify_observers(self, which=None, min_priority=None):
"""
Notifies all observers. Which is the element, which kicked off this
notification loop. The first argument will be self, the second `which`.
.. note::
notifies only observers with priority p > min_prior... | python | def notify_observers(self, which=None, min_priority=None):
"""
Notifies all observers. Which is the element, which kicked off this
notification loop. The first argument will be self, the second `which`.
.. note::
notifies only observers with priority p > min_prior... | Notifies all observers. Which is the element, which kicked off this
notification loop. The first argument will be self, the second `which`.
.. note::
notifies only observers with priority p > min_priority!
:param min_priority: only notify observers with priori... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/observable.py#L75-L96 |
sods/paramz | paramz/core/constrainable.py | Constrainable.constrain_fixed | def constrain_fixed(self, value=None, warning=True, trigger_parent=True):
"""
Constrain this parameter to be fixed to the current value it carries.
This does not override the previous constraints, so unfixing will
restore the constraint set before fixing.
:param warning: print ... | python | def constrain_fixed(self, value=None, warning=True, trigger_parent=True):
"""
Constrain this parameter to be fixed to the current value it carries.
This does not override the previous constraints, so unfixing will
restore the constraint set before fixing.
:param warning: print ... | Constrain this parameter to be fixed to the current value it carries.
This does not override the previous constraints, so unfixing will
restore the constraint set before fixing.
:param warning: print a warning for overwriting constraints. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L52-L68 |
sods/paramz | paramz/core/constrainable.py | Constrainable.unconstrain_fixed | def unconstrain_fixed(self):
"""
This parameter will no longer be fixed.
If there was a constraint on this parameter when fixing it,
it will be constraint with that previous constraint.
"""
unconstrained = self.unconstrain(__fixed__)
self._highest_parent_._set_un... | python | def unconstrain_fixed(self):
"""
This parameter will no longer be fixed.
If there was a constraint on this parameter when fixing it,
it will be constraint with that previous constraint.
"""
unconstrained = self.unconstrain(__fixed__)
self._highest_parent_._set_un... | This parameter will no longer be fixed.
If there was a constraint on this parameter when fixing it,
it will be constraint with that previous constraint. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L71-L82 |
sods/paramz | paramz/core/constrainable.py | Constrainable.constrain | def constrain(self, transform, warning=True, trigger_parent=True):
"""
:param transform: the :py:class:`paramz.transformations.Transformation`
to constrain the this parameter to.
:param warning: print a warning if re-constraining parameters.
Constrain the param... | python | def constrain(self, transform, warning=True, trigger_parent=True):
"""
:param transform: the :py:class:`paramz.transformations.Transformation`
to constrain the this parameter to.
:param warning: print a warning if re-constraining parameters.
Constrain the param... | :param transform: the :py:class:`paramz.transformations.Transformation`
to constrain the this parameter to.
:param warning: print a warning if re-constraining parameters.
Constrain the parameter to the given
:py:class:`paramz.transformations.Transformation`. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L138-L156 |
sods/paramz | paramz/core/constrainable.py | Constrainable.constrain_positive | def constrain_positive(self, warning=True, trigger_parent=True):
"""
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default positive constraint.
"""
self.constrain(Logexp(), warning=warning, trigger_parent=trigger_parent) | python | def constrain_positive(self, warning=True, trigger_parent=True):
"""
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default positive constraint.
"""
self.constrain(Logexp(), warning=warning, trigger_parent=trigger_parent) | :param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default positive constraint. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L167-L173 |
sods/paramz | paramz/core/constrainable.py | Constrainable.constrain_negative | def constrain_negative(self, warning=True, trigger_parent=True):
"""
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default negative constraint.
"""
self.constrain(NegativeLogexp(), warning=warning, trigger_parent=trigger_parent) | python | def constrain_negative(self, warning=True, trigger_parent=True):
"""
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default negative constraint.
"""
self.constrain(NegativeLogexp(), warning=warning, trigger_parent=trigger_parent) | :param warning: print a warning if re-constraining parameters.
Constrain this parameter to the default negative constraint. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L175-L181 |
sods/paramz | paramz/core/constrainable.py | Constrainable.constrain_bounded | def constrain_bounded(self, lower, upper, warning=True, trigger_parent=True):
"""
:param lower, upper: the limits to bound this parameter to
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to lie within the given range.
"""
self.co... | python | def constrain_bounded(self, lower, upper, warning=True, trigger_parent=True):
"""
:param lower, upper: the limits to bound this parameter to
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to lie within the given range.
"""
self.co... | :param lower, upper: the limits to bound this parameter to
:param warning: print a warning if re-constraining parameters.
Constrain this parameter to lie within the given range. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/constrainable.py#L183-L190 |
sods/paramz | paramz/__init__.py | load | def load(file_or_path):
"""
Load a previously pickled model, using `m.pickle('path/to/file.pickle)'`
:param file_name: path/to/file.pickle
"""
from pickle import UnpicklingError
_python3 = True
try:
import cPickle as pickle
_python3 = False
except ImportError: #python3
... | python | def load(file_or_path):
"""
Load a previously pickled model, using `m.pickle('path/to/file.pickle)'`
:param file_name: path/to/file.pickle
"""
from pickle import UnpicklingError
_python3 = True
try:
import cPickle as pickle
_python3 = False
except ImportError: #python3
... | Load a previously pickled model, using `m.pickle('path/to/file.pickle)'`
:param file_name: path/to/file.pickle | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/__init__.py#L52-L78 |
sods/paramz | paramz/core/gradcheckable.py | Gradcheckable.checkgrad | def checkgrad(self, verbose=0, step=1e-6, tolerance=1e-3, df_tolerance=1e-12):
"""
Check the gradient of this parameter with respect to the highest parent's
objective function.
This is a three point estimate of the gradient, wiggling at the parameters
with a stepsize step.
... | python | def checkgrad(self, verbose=0, step=1e-6, tolerance=1e-3, df_tolerance=1e-12):
"""
Check the gradient of this parameter with respect to the highest parent's
objective function.
This is a three point estimate of the gradient, wiggling at the parameters
with a stepsize step.
... | Check the gradient of this parameter with respect to the highest parent's
objective function.
This is a three point estimate of the gradient, wiggling at the parameters
with a stepsize step.
The check passes if either the ratio or the difference between numerical and
analytical g... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/gradcheckable.py#L44-L69 |
sods/paramz | paramz/optimization/optimization.py | opt_tnc.opt | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the TNC optimizer
"""
tnc_rcstrings = ['Local minimum', 'Converged', 'XConverged', 'Maximum number of f evaluations reached',
'Line search failed', 'Function is constant']
assert f_fp != None, "TNC requires... | python | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the TNC optimizer
"""
tnc_rcstrings = ['Local minimum', 'Converged', 'XConverged', 'Maximum number of f evaluations reached',
'Line search failed', 'Function is constant']
assert f_fp != None, "TNC requires... | Run the TNC optimizer | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/optimization.py#L75-L98 |
sods/paramz | paramz/optimization/optimization.py | opt_lbfgsb.opt | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the optimizer
"""
rcstrings = ['Converged', 'Maximum number of f evaluations reached', 'Error']
assert f_fp != None, "BFGS requires f_fp"
opt_dict = {}
if self.xtol is not None:
print("WARNI... | python | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the optimizer
"""
rcstrings = ['Converged', 'Maximum number of f evaluations reached', 'Error']
assert f_fp != None, "BFGS requires f_fp"
opt_dict = {}
if self.xtol is not None:
print("WARNI... | Run the optimizer | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/optimization.py#L105-L132 |
sods/paramz | paramz/optimization/optimization.py | opt_bfgs.opt | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the optimizer
"""
rcstrings = ['','Maximum number of iterations exceeded', 'Gradient and/or function calls not changing']
opt_dict = {}
if self.xtol is not None:
print("WARNING: bfgs doesn't have an ... | python | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
Run the optimizer
"""
rcstrings = ['','Maximum number of iterations exceeded', 'Gradient and/or function calls not changing']
opt_dict = {}
if self.xtol is not None:
print("WARNING: bfgs doesn't have an ... | Run the optimizer | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/optimization.py#L139-L159 |
sods/paramz | paramz/optimization/optimization.py | opt_simplex.opt | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
The simplex optimizer does not require gradients.
"""
statuses = ['Converged', 'Maximum number of function evaluations made', 'Maximum number of iterations reached']
opt_dict = {}
if self.xtol is not None:
... | python | def opt(self, x_init, f_fp=None, f=None, fp=None):
"""
The simplex optimizer does not require gradients.
"""
statuses = ['Converged', 'Maximum number of function evaluations made', 'Maximum number of iterations reached']
opt_dict = {}
if self.xtol is not None:
... | The simplex optimizer does not require gradients. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/optimization.py#L166-L188 |
sods/paramz | paramz/caching.py | Cacher.combine_inputs | def combine_inputs(self, args, kw, ignore_args):
"Combines the args and kw in a unique way, such that ordering of kwargs does not lead to recompute"
inputs= args + tuple(c[1] for c in sorted(kw.items(), key=lambda x: x[0]))
# REMOVE the ignored arguments from input and PREVENT it from being chec... | python | def combine_inputs(self, args, kw, ignore_args):
"Combines the args and kw in a unique way, such that ordering of kwargs does not lead to recompute"
inputs= args + tuple(c[1] for c in sorted(kw.items(), key=lambda x: x[0]))
# REMOVE the ignored arguments from input and PREVENT it from being chec... | Combines the args and kw in a unique way, such that ordering of kwargs does not lead to recompute | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L90-L94 |
sods/paramz | paramz/caching.py | Cacher.prepare_cache_id | def prepare_cache_id(self, combined_args_kw):
"get the cacheid (conc. string of argument self.ids in order)"
cache_id = "".join(self.id(a) for a in combined_args_kw)
return cache_id | python | def prepare_cache_id(self, combined_args_kw):
"get the cacheid (conc. string of argument self.ids in order)"
cache_id = "".join(self.id(a) for a in combined_args_kw)
return cache_id | get the cacheid (conc. string of argument self.ids in order) | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L96-L99 |
sods/paramz | paramz/caching.py | Cacher.ensure_cache_length | def ensure_cache_length(self):
"Ensures the cache is within its limits and has one place free"
if len(self.order) == self.limit:
# we have reached the limit, so lets release one element
cache_id = self.order.popleft()
combined_args_kw = self.cached_inputs[cache_id]
... | python | def ensure_cache_length(self):
"Ensures the cache is within its limits and has one place free"
if len(self.order) == self.limit:
# we have reached the limit, so lets release one element
cache_id = self.order.popleft()
combined_args_kw = self.cached_inputs[cache_id]
... | Ensures the cache is within its limits and has one place free | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L101-L132 |
sods/paramz | paramz/caching.py | Cacher.add_to_cache | def add_to_cache(self, cache_id, inputs, output):
"""This adds cache_id to the cache, with inputs and output"""
self.inputs_changed[cache_id] = False
self.cached_outputs[cache_id] = output
self.order.append(cache_id)
self.cached_inputs[cache_id] = inputs
for a in inputs:
... | python | def add_to_cache(self, cache_id, inputs, output):
"""This adds cache_id to the cache, with inputs and output"""
self.inputs_changed[cache_id] = False
self.cached_outputs[cache_id] = output
self.order.append(cache_id)
self.cached_inputs[cache_id] = inputs
for a in inputs:
... | This adds cache_id to the cache, with inputs and output | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L134-L147 |
sods/paramz | paramz/caching.py | Cacher.on_cache_changed | def on_cache_changed(self, direct, which=None):
"""
A callback funtion, which sets local flags when the elements of some cached inputs change
this function gets 'hooked up' to the inputs when we cache them, and upon their elements being changed we update here.
"""
for what in [d... | python | def on_cache_changed(self, direct, which=None):
"""
A callback funtion, which sets local flags when the elements of some cached inputs change
this function gets 'hooked up' to the inputs when we cache them, and upon their elements being changed we update here.
"""
for what in [d... | A callback funtion, which sets local flags when the elements of some cached inputs change
this function gets 'hooked up' to the inputs when we cache them, and upon their elements being changed we update here. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L194-L204 |
sods/paramz | paramz/caching.py | Cacher.reset | def reset(self):
"""
Totally reset the cache
"""
[a().remove_observer(self, self.on_cache_changed) if (a() is not None) else None for [a, _] in self.cached_input_ids.values()]
self.order = collections.deque()
self.cached_inputs = {} # point from cache_ids to a list of [... | python | def reset(self):
"""
Totally reset the cache
"""
[a().remove_observer(self, self.on_cache_changed) if (a() is not None) else None for [a, _] in self.cached_input_ids.values()]
self.order = collections.deque()
self.cached_inputs = {} # point from cache_ids to a list of [... | Totally reset the cache | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L206-L223 |
sods/paramz | paramz/caching.py | FunctionCache.disable_caching | def disable_caching(self):
"Disable the cache of this object. This also removes previously cached results"
self.caching_enabled = False
for c in self.values():
c.disable_cacher() | python | def disable_caching(self):
"Disable the cache of this object. This also removes previously cached results"
self.caching_enabled = False
for c in self.values():
c.disable_cacher() | Disable the cache of this object. This also removes previously cached results | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L246-L250 |
sods/paramz | paramz/caching.py | FunctionCache.enable_caching | def enable_caching(self):
"Enable the cache of this object."
self.caching_enabled = True
for c in self.values():
c.enable_cacher() | python | def enable_caching(self):
"Enable the cache of this object."
self.caching_enabled = True
for c in self.values():
c.enable_cacher() | Enable the cache of this object. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/caching.py#L252-L256 |
sods/paramz | paramz/optimization/scg.py | SCG | def SCG(f, gradf, x, optargs=(), maxiters=500, max_f_eval=np.inf, xtol=None, ftol=None, gtol=None):
"""
Optimisation through Scaled Conjugate Gradients (SCG)
f: the objective function
gradf : the gradient function (should return a 1D np.ndarray)
x : the initial condition
Returns
x the opti... | python | def SCG(f, gradf, x, optargs=(), maxiters=500, max_f_eval=np.inf, xtol=None, ftol=None, gtol=None):
"""
Optimisation through Scaled Conjugate Gradients (SCG)
f: the objective function
gradf : the gradient function (should return a 1D np.ndarray)
x : the initial condition
Returns
x the opti... | Optimisation through Scaled Conjugate Gradients (SCG)
f: the objective function
gradf : the gradient function (should return a 1D np.ndarray)
x : the initial condition
Returns
x the optimal value for x
flog : a list of all the objective values
function_eval number of fn evaluations
sta... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/optimization/scg.py#L44-L174 |
sods/paramz | paramz/core/lists_and_dicts.py | ObserverList.remove | def remove(self, priority, observer, callble):
"""
Remove one observer, which had priority and callble.
"""
self.flush()
for i in range(len(self) - 1, -1, -1):
p,o,c = self[i]
if priority==p and observer==o and callble==c:
del self._poc[i] | python | def remove(self, priority, observer, callble):
"""
Remove one observer, which had priority and callble.
"""
self.flush()
for i in range(len(self) - 1, -1, -1):
p,o,c = self[i]
if priority==p and observer==o and callble==c:
del self._poc[i] | Remove one observer, which had priority and callble. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/lists_and_dicts.py#L78-L86 |
sods/paramz | paramz/core/lists_and_dicts.py | ObserverList.add | def add(self, priority, observer, callble):
"""
Add an observer with priority and callble
"""
#if observer is not None:
ins = 0
for pr, _, _ in self:
if priority > pr:
break
ins += 1
self._poc.insert(ins, (priority, weakref.... | python | def add(self, priority, observer, callble):
"""
Add an observer with priority and callble
"""
#if observer is not None:
ins = 0
for pr, _, _ in self:
if priority > pr:
break
ins += 1
self._poc.insert(ins, (priority, weakref.... | Add an observer with priority and callble | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/lists_and_dicts.py#L91-L101 |
sods/paramz | paramz/core/index_operations.py | ParameterIndexOperations.properties_for | def properties_for(self, index):
"""
Returns a list of properties, such that each entry in the list corresponds
to the element of the index given.
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
>>> properties_for([2,3,5])
[['one'], ['one', 'two'], ['two... | python | def properties_for(self, index):
"""
Returns a list of properties, such that each entry in the list corresponds
to the element of the index given.
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
>>> properties_for([2,3,5])
[['one'], ['one', 'two'], ['two... | Returns a list of properties, such that each entry in the list corresponds
to the element of the index given.
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
>>> properties_for([2,3,5])
[['one'], ['one', 'two'], ['two']] | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/index_operations.py#L132-L143 |
sods/paramz | paramz/core/index_operations.py | ParameterIndexOperations.properties_dict_for | def properties_dict_for(self, index):
"""
Return a dictionary, containing properties as keys and indices as index
Thus, the indices for each constraint, which is contained will be collected as
one dictionary
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
... | python | def properties_dict_for(self, index):
"""
Return a dictionary, containing properties as keys and indices as index
Thus, the indices for each constraint, which is contained will be collected as
one dictionary
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
... | Return a dictionary, containing properties as keys and indices as index
Thus, the indices for each constraint, which is contained will be collected as
one dictionary
Example:
let properties: 'one':[1,2,3,4], 'two':[3,5,6]
>>> properties_dict_for([2,3,5])
{'one':[2,3], '... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/index_operations.py#L145-L159 |
sods/paramz | paramz/model.py | Model.optimize | def optimize(self, optimizer=None, start=None, messages=False, max_iters=1000, ipython_notebook=True, clear_after_finish=False, **kwargs):
"""
Optimize the model using self.log_likelihood and self.log_likelihood_gradient, as well as self.priors.
kwargs are passed to the optimizer. They can be:
... | python | def optimize(self, optimizer=None, start=None, messages=False, max_iters=1000, ipython_notebook=True, clear_after_finish=False, **kwargs):
"""
Optimize the model using self.log_likelihood and self.log_likelihood_gradient, as well as self.priors.
kwargs are passed to the optimizer. They can be:
... | Optimize the model using self.log_likelihood and self.log_likelihood_gradient, as well as self.priors.
kwargs are passed to the optimizer. They can be:
:param max_iters: maximum number of function evaluations
:type max_iters: int
:messages: True: Display messages during optimisation, "... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L65-L116 |
sods/paramz | paramz/model.py | Model.optimize_restarts | def optimize_restarts(self, num_restarts=10, robust=False, verbose=True, parallel=False, num_processes=None, **kwargs):
"""
Perform random restarts of the model, and set the model to the best
seen solution.
If the robust flag is set, exceptions raised during optimizations will
b... | python | def optimize_restarts(self, num_restarts=10, robust=False, verbose=True, parallel=False, num_processes=None, **kwargs):
"""
Perform random restarts of the model, and set the model to the best
seen solution.
If the robust flag is set, exceptions raised during optimizations will
b... | Perform random restarts of the model, and set the model to the best
seen solution.
If the robust flag is set, exceptions raised during optimizations will
be handled silently. If _all_ runs fail, the model is reset to the
existing parameter values.
\*\*kwargs are passed to the ... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L118-L190 |
sods/paramz | paramz/model.py | Model._grads | def _grads(self, x):
"""
Gets the gradients from the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the gradients, and will raise the original exception if
the objective cannot be computed.
:param x: the paramete... | python | def _grads(self, x):
"""
Gets the gradients from the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the gradients, and will raise the original exception if
the objective cannot be computed.
:param x: the paramete... | Gets the gradients from the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the gradients, and will raise the original exception if
the objective cannot be computed.
:param x: the parameters of the model.
:type x: np.arra... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L225-L246 |
sods/paramz | paramz/model.py | Model._objective | def _objective(self, x):
"""
The objective function passed to the optimizer. It combines
the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the objective, and will raise the original exception if
the objective can... | python | def _objective(self, x):
"""
The objective function passed to the optimizer. It combines
the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the objective, and will raise the original exception if
the objective can... | The objective function passed to the optimizer. It combines
the likelihood and the priors.
Failures are handled robustly. The algorithm will try several times to
return the objective, and will raise the original exception if
the objective cannot be computed.
:param x: the param... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L248-L269 |
sods/paramz | paramz/model.py | Model._checkgrad | def _checkgrad(self, target_param=None, verbose=False, step=1e-6, tolerance=1e-3, df_tolerance=1e-12):
"""
Check the gradient of the ,odel by comparing to a numerical
estimate. If the verbose flag is passed, individual
components are tested (and printed)
:param verbose: If True... | python | def _checkgrad(self, target_param=None, verbose=False, step=1e-6, tolerance=1e-3, df_tolerance=1e-12):
"""
Check the gradient of the ,odel by comparing to a numerical
estimate. If the verbose flag is passed, individual
components are tested (and printed)
:param verbose: If True... | Check the gradient of the ,odel by comparing to a numerical
estimate. If the verbose flag is passed, individual
components are tested (and printed)
:param verbose: If True, print a "full" checking of each parameter
:type verbose: bool
:param step: The size of the step around wh... | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L284-L408 |
sods/paramz | paramz/model.py | Model._repr_html_ | def _repr_html_(self):
"""Representation of the model in html for notebook display."""
model_details = [['<b>Model</b>', self.name + '<br>'],
['<b>Objective</b>', '{}<br>'.format(float(self.objective_function()))],
["<b>Number of Parameters</b>", '{}<br>... | python | def _repr_html_(self):
"""Representation of the model in html for notebook display."""
model_details = [['<b>Model</b>', self.name + '<br>'],
['<b>Objective</b>', '{}<br>'.format(float(self.objective_function()))],
["<b>Number of Parameters</b>", '{}<br>... | Representation of the model in html for notebook display. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/model.py#L410-L427 |
sods/paramz | paramz/core/indexable.py | Indexable.add_index_operation | def add_index_operation(self, name, operations):
"""
Add index operation with name to the operations given.
raises: attribute error if operations exist.
"""
if name not in self._index_operations:
self._add_io(name, operations)
else:
raise Attribut... | python | def add_index_operation(self, name, operations):
"""
Add index operation with name to the operations given.
raises: attribute error if operations exist.
"""
if name not in self._index_operations:
self._add_io(name, operations)
else:
raise Attribut... | Add index operation with name to the operations given.
raises: attribute error if operations exist. | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/indexable.py#L81-L90 |
sods/paramz | paramz/core/indexable.py | Indexable._disconnect_parent | def _disconnect_parent(self, *args, **kw):
"""
From Parentable:
disconnect the parent and set the new constraints to constr
"""
for name, iop in list(self._index_operations.items()):
iopc = iop.copy()
iop.clear()
self.remove_index_operation(nam... | python | def _disconnect_parent(self, *args, **kw):
"""
From Parentable:
disconnect the parent and set the new constraints to constr
"""
for name, iop in list(self._index_operations.items()):
iopc = iop.copy()
iop.clear()
self.remove_index_operation(nam... | From Parentable:
disconnect the parent and set the new constraints to constr | https://github.com/sods/paramz/blob/ae6fc6274b70fb723d91e48fc5026a9bc5a06508/paramz/core/indexable.py#L110-L125 |
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