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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | JunctionOverlap.calculate_overlap | def calculate_overlap(self):
"""Create the array that describes how junctions overlap"""
overs = []
if not self.tx_obj1.range.overlaps(self.tx_obj2.range): return [] # if they dont overlap wont find anything
for i in range(0,len(self.j1)):
for j in range(0,len(self.j2)):
if sel... | python | def calculate_overlap(self):
"""Create the array that describes how junctions overlap"""
overs = []
if not self.tx_obj1.range.overlaps(self.tx_obj2.range): return [] # if they dont overlap wont find anything
for i in range(0,len(self.j1)):
for j in range(0,len(self.j2)):
if sel... | [
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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | Junction.get_string | def get_string(self):
"""A string representation of the junction
:return: string represnetation
:rtype: string
"""
return self.left.chr+':'+str(self.left.end)+'-'+self.right.chr+':'+str(self.right.start) | python | def get_string(self):
"""A string representation of the junction
:return: string represnetation
:rtype: string
"""
return self.left.chr+':'+str(self.left.end)+'-'+self.right.chr+':'+str(self.right.start) | [
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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | Junction.get_range_string | def get_range_string(self):
"""Another string representation of the junction. these may be redundant."""
return self.left.chr+":"+str(self.left.end)+'/'+self.right.chr+":"+str(self.right.start) | python | def get_range_string(self):
"""Another string representation of the junction. these may be redundant."""
return self.left.chr+":"+str(self.left.end)+'/'+self.right.chr+":"+str(self.right.start) | [
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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | Junction.equals | def equals(self,junc):
"""test equality with another junction"""
if self.left.equals(junc.left): return False
if self.right.equals(junc.right): return False
return True | python | def equals(self,junc):
"""test equality with another junction"""
if self.left.equals(junc.left): return False
if self.right.equals(junc.right): return False
return True | [
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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | Junction.overlaps | def overlaps(self,junc,tolerance=0):
"""see if junction overlaps with tolerance"""
if not self.left.overlaps(junc.left,padding=tolerance): return False
if not self.right.overlaps(junc.right,padding=tolerance): return False
return True | python | def overlaps(self,junc,tolerance=0):
"""see if junction overlaps with tolerance"""
if not self.left.overlaps(junc.left,padding=tolerance): return False
if not self.right.overlaps(junc.right,padding=tolerance): return False
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jason-weirather/py-seq-tools | seqtools/structure/transcript/__init__.py | Junction.cmp | def cmp(self,junc,tolerance=0):
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* 1 if junc comes after self
* 0 if overlaps
* 2 if else
:param junc:
:param tolerance: optional search space (default=0, no tolerance)
:type junc: Junction
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* 1 if junc comes after self
* 0 if overlaps
* 2 if else
:param junc:
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jason-weirather/py-seq-tools | seqtools/format/fasta/__init__.py | FASTAData.get_sequence | def get_sequence(self,chr=None,start=None,end=None,dir=None,rng=None):
"""get a sequence
:param chr:
:param start:
:param end:
:param dir: charcter +/-
:parma rng:
:type chr: string
:type start: int
:type end: int
:type dir: char
:type rng: GenomicRange
:return: sequence... | python | def get_sequence(self,chr=None,start=None,end=None,dir=None,rng=None):
"""get a sequence
:param chr:
:param start:
:param end:
:param dir: charcter +/-
:parma rng:
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:type start: int
:type end: int
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipManager.get_relationship_query_session | def get_relationship_query_session(self):
"""Gets the ``OsidSession`` associated with the relationship query service.
return: (osid.relationship.RelationshipQuerySession) - a
``RelationshipQuerySession``
raise: OperationFailed - unable to complete request
raise: Unimpl... | python | def get_relationship_query_session(self):
"""Gets the ``OsidSession`` associated with the relationship query service.
return: (osid.relationship.RelationshipQuerySession) - a
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipManager.get_relationship_query_session_for_family | def get_relationship_query_session_for_family(self, family_id):
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arg: family_id (osid.id.Id): the ``Id`` of the family
return: (osid.relationship.RelationshipQuerySession) - a
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"""Gets the ``OsidSession`` associated with the relationship query service for the given family.
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipManager.get_relationship_admin_session | def get_relationship_admin_session(self):
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return: (osid.relationship.RelationshipAdminSession) - a
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raise: OperationFailed - unable to complete request
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipManager.get_relationship_admin_session_for_family | def get_relationship_admin_session_for_family(self, family_id):
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arg: family_id (osid.id.Id): the ``Id`` of the ``Family``
return: (osid.relationship.RelationshipAdminSession) - a
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"""Gets the ``OsidSession`` associated with the relationship administration service for the given family.
arg: family_id (osid.id.Id): the ``Id`` of the ``Family``
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_relationship_lookup_session | def get_relationship_lookup_session(self, proxy):
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return: (osid.relationship.RelationshipLookupSession) - a
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_relationship_lookup_session_for_family | def get_relationship_lookup_session_for_family(self, family_id, proxy):
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_family_lookup_session | def get_family_lookup_session(self, proxy):
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_family_admin_session | def get_family_admin_session(self, proxy):
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_family_hierarchy_session | def get_family_hierarchy_session(self, proxy):
"""Gets the ``OsidSession`` associated with the family hierarchy service.
arg: proxy (osid.proxy.Proxy): a proxy
return: (osid.relationship.FamilyHierarchySession) - a
``FamilyHierarchySession`` for families
raise: NullA... | python | def get_family_hierarchy_session(self, proxy):
"""Gets the ``OsidSession`` associated with the family hierarchy service.
arg: proxy (osid.proxy.Proxy): a proxy
return: (osid.relationship.FamilyHierarchySession) - a
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mitsei/dlkit | dlkit/json_/relationship/managers.py | RelationshipProxyManager.get_family_hierarchy_design_session | def get_family_hierarchy_design_session(self, proxy):
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"""Gets the ``OsidSession`` associated with the family hierarchy design service.
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mitsei/dlkit | dlkit/authz_adapter/osid/managers.py | OsidProfile._get_authz_session | def _get_authz_session(self):
"""Gets the AuthorizationSession for the default (bootstrap) typed Vault
Assumes only one vault of this Type, but it can have children depending on underlying impl.
"""
from ..utilities import BOOTSTRAP_VAULT_TYPE
try:
vaults = self._ge... | python | def _get_authz_session(self):
"""Gets the AuthorizationSession for the default (bootstrap) typed Vault
Assumes only one vault of this Type, but it can have children depending on underlying impl.
"""
from ..utilities import BOOTSTRAP_VAULT_TYPE
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mitsei/dlkit | dlkit/authz_adapter/osid/managers.py | OsidProfile._get_override_lookup_session | def _get_override_lookup_session(self):
"""Gets the AuthorizationLookupSession for the override typed Vault
Assumes only one
"""
from ..utilities import OVERRIDE_VAULT_TYPE
try:
override_vaults = self._get_vault_lookup_session().get_vaults_by_genus_type(OVERRIDE_VAU... | python | def _get_override_lookup_session(self):
"""Gets the AuthorizationLookupSession for the override typed Vault
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override_vaults = self._get_vault_lookup_session().get_vaults_by_genus_type(OVERRIDE_VAU... | [
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFileGeneric._fetch_headers | def _fetch_headers(self):
"""Needs ._fh handle to stream to be set by child"""
self._header_text, self._n_ref = self._read_top_header()
self._ref_lengths, self._ref_names = self._read_reference_information()
self._header = SAMHeader(self._header_text) | python | def _fetch_headers(self):
"""Needs ._fh handle to stream to be set by child"""
self._header_text, self._n_ref = self._read_top_header()
self._ref_lengths, self._ref_names = self._read_reference_information()
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFileGeneric._get_block | def _get_block(self):
"""Just read a single block from your current location in _fh"""
b = self._fh.read(4) # get block size bytes
#print self._fh.tell()
if not b: raise StopIteration
block_size = struct.unpack('<i',b)[0]
return self._fh.read(block_size) | python | def _get_block(self):
"""Just read a single block from your current location in _fh"""
b = self._fh.read(4) # get block size bytes
#print self._fh.tell()
if not b: raise StopIteration
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFileGeneric._read_reference_information | def _read_reference_information(self):
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"""Reads the reference names and lengths"""
ref_lengths = {}
ref_names = []
for n in range(self._n_ref):
l_name = struct.unpack('<i',self._fh.read(4))[0]
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFileGeneric._read_top_header | def _read_top_header(self):
"""Read the header text and number of reference seqs"""
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return header_text, n_ref | python | def _read_top_header(self):
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFile.fetch_by_coord | def fetch_by_coord(self,coord):
"""get a single entry by the coordinate location [blockStart, innerStart]
.. warning:: creates a new instance of a BAMFile object when maybe the one we had would have worked
"""
#print coord
#print self.path
#b2 = BAMFile(self.path,blockStart=coord[0],innerStart=... | python | def fetch_by_coord(self,coord):
"""get a single entry by the coordinate location [blockStart, innerStart]
.. warning:: creates a new instance of a BAMFile object when maybe the one we had would have worked
"""
#print coord
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jason-weirather/py-seq-tools | seqtools/format/sam/bam/files.py | BAMFile.fetch_starting_at_coord | def fetch_starting_at_coord(self,coord):
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mitsei/dlkit | dlkit/json_/authentication/searches.py | AgentSearchResults.get_agents | def get_agents(self):
"""Gets the agent list resulting from the search.
return: (osid.authentication.AgentList) - the agent list
raise: IllegalState - list already retrieved
*compliance: mandatory -- This method must be implemented.*
"""
if self.retrieved:
... | python | def get_agents(self):
"""Gets the agent list resulting from the search.
return: (osid.authentication.AgentList) - the agent list
raise: IllegalState - list already retrieved
*compliance: mandatory -- This method must be implemented.*
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theosysbio/means | src/means/simulation/solvers.py | parse_flag | def parse_flag(exception_message):
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Parse the flag from the solver exception.
e.g.
>>> parse_flag("Exception: Dopri5 failed with flag -3")
-3
:param exception_message: message from the exception
:type exception_message: str
:return: flag id
:rtype: int
"""
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"""
Parse the flag from the solver exception.
e.g.
>>> parse_flag("Exception: Dopri5 failed with flag -3")
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theosysbio/means | src/means/simulation/solvers.py | SolverBase.simulate | def simulate(self, timepoints):
"""
Simulate initialised solver for the specified timepoints
:param timepoints: timepoints that will be returned from simulation
:return: a list of trajectories for each of the equations in the problem.
"""
solver = self._solver
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"""
Simulate initialised solver for the specified timepoints
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solver = self._solver
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theosysbio/means | src/means/simulation/solvers.py | SolverBase._results_to_trajectories | def _results_to_trajectories(self, simulated_timepoints, simulated_values):
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:param simulated_values: values returned by the solver
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koolsb/pyblackbird | pyblackbird/__init__.py | get_blackbird | def get_blackbird(url, use_serial=True):
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:return: synchronous implementation of Blackbird interface
"""
lock = RLock()
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@wraps(func)
... | python | def get_blackbird(url, use_serial=True):
"""
Return synchronous version of Blackbird interface
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lock = RLock()
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koolsb/pyblackbird | pyblackbird/__init__.py | get_async_blackbird | def get_async_blackbird(port_url, loop):
"""
Return asynchronous version of Blackbird interface
:param port_url: serial port, i.e. '/dev/ttyUSB0'
:return: asynchronous implementation of Blackbird interface
"""
lock = asyncio.Lock()
def locked_coro(coro):
@asyncio.coroutine
... | python | def get_async_blackbird(port_url, loop):
"""
Return asynchronous version of Blackbird interface
:param port_url: serial port, i.e. '/dev/ttyUSB0'
:return: asynchronous implementation of Blackbird interface
"""
lock = asyncio.Lock()
def locked_coro(coro):
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager._set_log_view | def _set_log_view(self, session):
"""Sets the underlying log view to match current view"""
if self._log_view == COMPARATIVE:
try:
session.use_comparative_log_view()
except AttributeError:
pass
else:
try:
session.... | python | def _set_log_view(self, session):
"""Sets the underlying log view to match current view"""
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.use_comparative_log_view | def use_comparative_log_view(self):
"""Pass through to provider LogEntryLogSession.use_comparative_log_view"""
self._log_view = COMPARATIVE
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for session in self._get_provider_sessions():
... | python | def use_comparative_log_view(self):
"""Pass through to provider LogEntryLogSession.use_comparative_log_view"""
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.use_plenary_log_view | def use_plenary_log_view(self):
"""Pass through to provider LogEntryLogSession.use_plenary_log_view"""
self._log_view = PLENARY
# self._get_provider_session('log_entry_log_session') # To make sure the session is tracked
for session in self._get_provider_sessions():
try:
... | python | def use_plenary_log_view(self):
"""Pass through to provider LogEntryLogSession.use_plenary_log_view"""
self._log_view = PLENARY
# self._get_provider_session('log_entry_log_session') # To make sure the session is tracked
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.get_logs_by_provider | def get_logs_by_provider(self, *args, **kwargs):
"""Pass through to provider LogLookupSession.get_logs_by_provider"""
# Implemented from kitosid template for -
# osid.resource.BinLookupSession.get_bins_by_provider
catalogs = self._get_provider_session('log_lookup_session').get_logs_by_pr... | python | def get_logs_by_provider(self, *args, **kwargs):
"""Pass through to provider LogLookupSession.get_logs_by_provider"""
# Implemented from kitosid template for -
# osid.resource.BinLookupSession.get_bins_by_provider
catalogs = self._get_provider_session('log_lookup_session').get_logs_by_pr... | [
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.get_logs | def get_logs(self):
"""Pass through to provider LogLookupSession.get_logs"""
# Implemented from kitosid template for -
# osid.resource.BinLookupSession.get_bins_template
catalogs = self._get_provider_session('log_lookup_session').get_logs()
cat_list = []
for cat in catalo... | python | def get_logs(self):
"""Pass through to provider LogLookupSession.get_logs"""
# Implemented from kitosid template for -
# osid.resource.BinLookupSession.get_bins_template
catalogs = self._get_provider_session('log_lookup_session').get_logs()
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.get_log_form | def get_log_form(self, *args, **kwargs):
"""Pass through to provider LogAdminSession.get_log_form_for_update"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.get_bin_form_for_update_template
# This method might be a bit sketchy. Time will tell.
if isin... | python | def get_log_form(self, *args, **kwargs):
"""Pass through to provider LogAdminSession.get_log_form_for_update"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.get_bin_form_for_update_template
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.update_log | def update_log(self, *args, **kwargs):
"""Pass through to provider LogAdminSession.update_log"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.update_bin
# OSID spec does not require returning updated catalog
return Log(
self._provider_mana... | python | def update_log(self, *args, **kwargs):
"""Pass through to provider LogAdminSession.update_log"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.update_bin
# OSID spec does not require returning updated catalog
return Log(
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mitsei/dlkit | dlkit/services/logging_.py | LoggingManager.save_log | def save_log(self, log_form, *args, **kwargs):
"""Pass through to provider LogAdminSession.update_log"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.update_bin
if log_form.is_for_update():
return self.update_log(log_form, *args, **kwargs)
... | python | def save_log(self, log_form, *args, **kwargs):
"""Pass through to provider LogAdminSession.update_log"""
# Implemented from kitosid template for -
# osid.resource.BinAdminSession.update_bin
if log_form.is_for_update():
return self.update_log(log_form, *args, **kwargs)
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mitsei/dlkit | dlkit/services/logging_.py | Log._set_log_view | def _set_log_view(self, session):
"""Sets the underlying log view to match current view"""
if self._log_view == FEDERATED:
try:
session.use_federated_log_view()
except AttributeError:
pass
else:
try:
session.use_... | python | def _set_log_view(self, session):
"""Sets the underlying log view to match current view"""
if self._log_view == FEDERATED:
try:
session.use_federated_log_view()
except AttributeError:
pass
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mitsei/dlkit | dlkit/services/logging_.py | Log.use_comparative_log_entry_view | def use_comparative_log_entry_view(self):
"""Pass through to provider LogEntryLookupSession.use_comparative_log_entry_view"""
self._object_views['log_entry'] = COMPARATIVE
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
for session in self._... | python | def use_comparative_log_entry_view(self):
"""Pass through to provider LogEntryLookupSession.use_comparative_log_entry_view"""
self._object_views['log_entry'] = COMPARATIVE
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
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mitsei/dlkit | dlkit/services/logging_.py | Log.use_plenary_log_entry_view | def use_plenary_log_entry_view(self):
"""Pass through to provider LogEntryLookupSession.use_plenary_log_entry_view"""
self._object_views['log_entry'] = PLENARY
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
for session in self._get_provider... | python | def use_plenary_log_entry_view(self):
"""Pass through to provider LogEntryLookupSession.use_plenary_log_entry_view"""
self._object_views['log_entry'] = PLENARY
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
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mitsei/dlkit | dlkit/services/logging_.py | Log.use_federated_log_view | def use_federated_log_view(self):
"""Pass through to provider LogEntryLookupSession.use_federated_log_view"""
self._log_view = FEDERATED
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
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... | python | def use_federated_log_view(self):
"""Pass through to provider LogEntryLookupSession.use_federated_log_view"""
self._log_view = FEDERATED
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
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mitsei/dlkit | dlkit/services/logging_.py | Log.use_isolated_log_view | def use_isolated_log_view(self):
"""Pass through to provider LogEntryLookupSession.use_isolated_log_view"""
self._log_view = ISOLATED
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
for session in self._get_provider_sessions():
t... | python | def use_isolated_log_view(self):
"""Pass through to provider LogEntryLookupSession.use_isolated_log_view"""
self._log_view = ISOLATED
# self._get_provider_session('log_entry_lookup_session') # To make sure the session is tracked
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mitsei/dlkit | dlkit/services/logging_.py | Log.get_log_entry_form | def get_log_entry_form(self, *args, **kwargs):
"""Pass through to provider LogEntryAdminSession.get_log_entry_form_for_update"""
# Implemented from kitosid template for -
# osid.resource.ResourceAdminSession.get_resource_form_for_update
# This method might be a bit sketchy. Time will tel... | python | def get_log_entry_form(self, *args, **kwargs):
"""Pass through to provider LogEntryAdminSession.get_log_entry_form_for_update"""
# Implemented from kitosid template for -
# osid.resource.ResourceAdminSession.get_resource_form_for_update
# This method might be a bit sketchy. Time will tel... | [
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mitsei/dlkit | dlkit/services/logging_.py | Log.save_log_entry | def save_log_entry(self, log_entry_form, *args, **kwargs):
"""Pass through to provider LogEntryAdminSession.update_log_entry"""
# Implemented from kitosid template for -
# osid.resource.ResourceAdminSession.update_resource
if log_entry_form.is_for_update():
return self.update... | python | def save_log_entry(self, log_entry_form, *args, **kwargs):
"""Pass through to provider LogEntryAdminSession.update_log_entry"""
# Implemented from kitosid template for -
# osid.resource.ResourceAdminSession.update_resource
if log_entry_form.is_for_update():
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mitsei/dlkit | dlkit/services/logging_.py | LogList.get_next_logs | def get_next_logs(self, n):
"""gets next n objects from list"""
# Implemented from kitosid template for -
# osid.resource.ResourceList.get_next_resources
if n > self.available():
# !!! This is not quite as specified (see method docs) !!!
raise IllegalState('not en... | python | def get_next_logs(self, n):
"""gets next n objects from list"""
# Implemented from kitosid template for -
# osid.resource.ResourceList.get_next_resources
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erkghlerngm44/malaffinity | malaffinity/malaffinity.py | MALAffinity.init | def init(self, base_user):
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Retrieve a "base user"'s list, and store it in :attr:`._base_scores`.
:param str base_user: Base users' username
"""
self._base_user = base_user
# Modify this for multiple services support when the time comes
base_list = endpoints.... | python | def init(self, base_user):
"""
Retrieve a "base user"'s list, and store it in :attr:`._base_scores`.
:param str base_user: Base users' username
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ANIME_ID: [BASE_USER_SCORE, OTHER_USER_SCORE],
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erkghlerngm44/malaffinity | malaffinity/malaffinity.py | MALAffinity.calculate_affinity | def calculate_affinity(self, username):
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python-odin/odinweb | odinweb/utils.py | to_bool | def to_bool(value):
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# type: (dict, dict) -> None
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python-odin/odinweb | odinweb/utils.py | sort_by_priority | def sort_by_priority(iterable, reverse=False, default_priority=10):
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juju/juju-bundlelib | jujubundlelib/changeset.py | handle_services | def handle_services(changeset):
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charms = {}
for service_name, service in sorted(changeset.bundle['services'].items()):
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juju/juju-bundlelib | jujubundlelib/changeset.py | handle_machines | def handle_machines(changeset):
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machines = sorted(changeset.bundle.get('machines', {}).items())
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"""Populate the change set with addMachines changes."""
machines = sorted(changeset.bundle.get('machines', {}).items())
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juju/juju-bundlelib | jujubundlelib/changeset.py | handle_relations | def handle_relations(changeset):
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relations = [models.Relation(*i.split(':')) if ':' in i
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juju/juju-bundlelib | jujubundlelib/changeset.py | handle_units | def handle_units(changeset):
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units, records = {}, {}
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for i in range(service.get('num_units', 0)):
record_id = 'addUnit-{}'.format(changeset.next_action())
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"""Populate the change set with addUnit changes."""
units, records = {}, {}
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juju/juju-bundlelib | jujubundlelib/changeset.py | _handle_units_placement | def _handle_units_placement(changeset, units, records):
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juju/juju-bundlelib | jujubundlelib/changeset.py | _next_unit_in_service | def _next_unit_in_service(service, placed_in_services):
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Receive the service name and a dict mapping service names to the current
number of placed units in that service.
"""
current = placed_in_services.get(service)
number = 0 ... | python | def _next_unit_in_service(service, placed_in_services):
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Receive the service name and a dict mapping service names to the current
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juju/juju-bundlelib | jujubundlelib/changeset.py | parse | def parse(bundle, handler=handle_services):
"""Return a generator yielding changes required to deploy the given bundle.
The bundle argument is a YAML decoded Python dict.
"""
changeset = ChangeSet(bundle)
while True:
handler = handler(changeset)
for change in changeset.recv():
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"""Return a generator yielding changes required to deploy the given bundle.
The bundle argument is a YAML decoded Python dict.
"""
changeset = ChangeSet(bundle)
while True:
handler = handler(changeset)
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OpenAgInitiative/openag_python | openag/couch.py | Server.get_or_create | def get_or_create(self, db_name):
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"""
Creates the database named `db_name` if it doesn't already exist and
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if not db_name in self:
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OpenAgInitiative/openag_python | openag/couch.py | Server.replicate | def replicate(self, doc_id, source, target, continuous=False):
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"""
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"""
Starts a replication from the `source` database to the `target`
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OpenAgInitiative/openag_python | openag/couch.py | Server.create_user | def create_user(self, username, password):
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Creates a user in the CouchDB instance with the username `username` and
password `password`
"""
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res = self["_users"].resource.put(
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"""
Creates a user in the CouchDB instance with the username `username` and
password `password`
"""
user_id = "org.couchdb.user:" + username
res = self["_users"].resource.put(
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OpenAgInitiative/openag_python | openag/couch.py | Server.log_in | def log_in(self, username, password):
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OpenAgInitiative/openag_python | openag/couch.py | Server.push_design_documents | def push_design_documents(self, design_path):
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"""
Push the design documents stored in `design_path` to the server
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OpenAgInitiative/openag_python | openag/couch.py | Server._folder_to_dict | def _folder_to_dict(self, path):
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gisce/flask-erppeek | flask_erppeek/openerp.py | OpenERP.init_app | def init_app(self, app):
"""This callback can be used to initialize an application for use with
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"""
app.config.setdefault('OPENERP_SERVER', 'http://localhost:8069')
app.config.setdefault('OPENERP_DATABASE', 'openerp')
app.config.setdefault('OPENERP_DEF... | python | def init_app(self, app):
"""This callback can be used to initialize an application for use with
the OpenERP server.
"""
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_search_session_for_repository | def get_asset_search_session_for_repository(self, repository_id=None):
"""Gets an asset search session for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
return: (osid.repository.AssetSearchSession) - an
AssetSearchSession
raise: NotF... | python | def get_asset_search_session_for_repository(self, repository_id=None):
"""Gets an asset search session for the given repository.
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return: (osid.repository.AssetSearchSession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_admin_session | def get_asset_admin_session(self, *args, **kwargs):
"""Gets an asset administration session for creating, updating and
deleting assets.
return: (osid.repository.AssetAdminSession) - an
AssetAdminSession
raise: OperationFailed - unable to complete request
raise: ... | python | def get_asset_admin_session(self, *args, **kwargs):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_admin_session_for_repository | def get_asset_admin_session_for_repository(self, repository_id=None, *args, **kwargs):
"""Gets an asset administration session for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
return: (osid.repository.AssetAdminSession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_temporal_session | def get_asset_temporal_session(self):
"""Gets the session for retrieving temporal coverage of an asset.
return: (osid.repository.AssetTemporalSession) - an
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raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_asset_te... | python | def get_asset_temporal_session(self):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_temporal_session_for_repository | def get_asset_temporal_session_for_repository(self, repository_id=None):
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arg: repository_id (osid.id.Id): the Id of the repository
return: (osid.repository.AssetTemporalSession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_temporal_assignment_session | def get_asset_temporal_assignment_session(self):
"""Gets the session for assigning temporal coverage to an asset.
return: (osid.repository.AssetTemporalAssignmentSession) - an
AssetTemporalAssignmentSession
raise: OperationFailed - unable to complete request
raise: Uni... | python | def get_asset_temporal_assignment_session(self):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_composition_session | def get_asset_composition_session(self):
"""Gets the session for retrieving asset compositions.
return: (osid.repository.AssetCompositionSession) - an
AssetCompositionSession
raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_asset_comp... | python | def get_asset_composition_session(self):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_asset_composition_design_session | def get_asset_composition_design_session(self):
"""Gets the session for creating asset compositions.
return: (osid.repository.AssetCompositionDesignSession) - an
AssetCompositionDesignSession
raise: OperationFailed - unable to complete request
raise: Unimplemented - su... | python | def get_asset_composition_design_session(self):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_composition_lookup_session | def get_composition_lookup_session(self):
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service.
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CompositionLookupSession
raise: OperationFailed - unable to complete request
raise: Un... | python | def get_composition_lookup_session(self):
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_composition_admin_session | def get_composition_admin_session(self):
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return: (osid.repository.CompositionAdminSession) - a
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raise: OperationFailed - unable to complete request
... | python | def get_composition_admin_session(self):
"""Gets a composition administration session for creating, updating
and deleting compositions.
return: (osid.repository.CompositionAdminSession) - a
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raise: OperationFailed - unable to complete request
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_composition_admin_session_for_repository | def get_composition_admin_session_for_repository(self, repository_id=None):
"""Gets a composiiton administrative session for the given
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arg: repository_id (osid.id.Id): the Id of the repository
return: (osid.repository.CompositionAdminSession) - a
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"""Gets a composiiton administrative session for the given
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arg: repository_id (osid.id.Id): the Id of the repository
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_repository_query_session | def get_repository_query_session(self):
"""Gets the repository query session.
return: (osid.repository.RepositoryQuerySession) - a
RepositoryQuerySession
raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_repository_query() is false
... | python | def get_repository_query_session(self):
"""Gets the repository query session.
return: (osid.repository.RepositoryQuerySession) - a
RepositoryQuerySession
raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_repository_query() is false
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_repository_search_session | def get_repository_search_session(self):
"""Gets the repository search session.
return: (osid.repository.RepositorySearchSession) - a
RepositorySearchSession
raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_repository_search() is fals... | python | def get_repository_search_session(self):
"""Gets the repository search session.
return: (osid.repository.RepositorySearchSession) - a
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryManager.get_repository_admin_session | def get_repository_admin_session(self):
"""Gets the repository administrative session for creating,
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raise: OperationFailed - unable to complete request
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raise: OperationFailed - unable to complete request
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_lookup_session | def get_asset_lookup_session(self, proxy, *args, **kwargs):
"""Gets the OsidSession associated with the asset lookup service.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetLookupSession) - the new
AssetLookupSession
raise: OperationFailed - una... | python | def get_asset_lookup_session(self, proxy, *args, **kwargs):
"""Gets the OsidSession associated with the asset lookup service.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetLookupSession) - the new
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_lookup_session_for_repository | def get_asset_lookup_session_for_repository(self, repository_id, proxy, *args, **kwargs):
"""Gets the OsidSession associated with the asset lookup service
for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
... | python | def get_asset_lookup_session_for_repository(self, repository_id, proxy, *args, **kwargs):
"""Gets the OsidSession associated with the asset lookup service
for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_query_session | def get_asset_query_session(self, proxy):
"""Gets an asset query session.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetQuerySession) - an
AssetQuerySession
raise: OperationFailed - unable to complete request
raise: Unimplemented - sup... | python | def get_asset_query_session(self, proxy):
"""Gets an asset query session.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetQuerySession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_query_session_for_repository | def get_asset_query_session_for_repository(self, repository_id, proxy):
"""Gets an asset query session for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetQuerySession) - an
... | python | def get_asset_query_session_for_repository(self, repository_id, proxy):
"""Gets an asset query session for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetQuerySession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_search_session | def get_asset_search_session(self, proxy):
"""Gets an asset search session.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSearchSession) - an
AssetSearchSession
raise: OperationFailed - unable to complete request
raise: Unimplemented -... | python | def get_asset_search_session(self, proxy):
"""Gets an asset search session.
arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_notification_session | def get_asset_notification_session(self, asset_receiver, proxy):
"""Gets the notification session for notifications pertaining to
asset changes.
arg: asset_receiver (osid.repository.AssetReceiver): the
notification callback
arg proxy (osid.proxy.Proxy): a proxy
... | python | def get_asset_notification_session(self, asset_receiver, proxy):
"""Gets the notification session for notifications pertaining to
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arg: asset_receiver (osid.repository.AssetReceiver): the
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arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_notification_session_for_repository | def get_asset_notification_session_for_repository(self, asset_receiver, repository_id, proxy):
"""Gets the asset notification session for the given repository.
arg: asset_receiver (osid.repository.AssetReceiver): the
notification callback
arg: repository_id (osid.id.Id): t... | python | def get_asset_notification_session_for_repository(self, asset_receiver, repository_id, proxy):
"""Gets the asset notification session for the given repository.
arg: asset_receiver (osid.repository.AssetReceiver): the
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_repository_session | def get_asset_repository_session(self, proxy):
"""Gets the session for retrieving asset to repository mappings.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetRepositorySession) - an
AssetRepositorySession
raise: OperationFailed - unable to comp... | python | def get_asset_repository_session(self, proxy):
"""Gets the session for retrieving asset to repository mappings.
arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_repository_assignment_session | def get_asset_repository_assignment_session(self, proxy):
"""Gets the session for assigning asset to repository mappings.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetRepositoryAssignmentSession) - an
AssetRepositoryAsignmentSession
raise: Ope... | python | def get_asset_repository_assignment_session(self, proxy):
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arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetRepositoryAssignmentSession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_smart_repository_session | def get_asset_smart_repository_session(self, repository_id, proxy):
"""Gets an asset smart repository session for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSmartRepositorySes... | python | def get_asset_smart_repository_session(self, repository_id, proxy):
"""Gets an asset smart repository session for the given repository.
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arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_temporal_assignment_session_for_repository | def get_asset_temporal_assignment_session_for_repository(self, repository_id, proxy):
"""Gets the session for assigning temporal coverage of an asset for
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arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
... | python | def get_asset_temporal_assignment_session_for_repository(self, repository_id, proxy):
"""Gets the session for assigning temporal coverage of an asset for
the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_spatial_session | def get_asset_spatial_session(self, proxy):
"""Gets the session for retrieving spatial coverage of an asset.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSpatialSession) - an
AssetSpatialSession
raise: OperationFailed - unable to complete requ... | python | def get_asset_spatial_session(self, proxy):
"""Gets the session for retrieving spatial coverage of an asset.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSpatialSession) - an
AssetSpatialSession
raise: OperationFailed - unable to complete requ... | [
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_spatial_session_for_repository | def get_asset_spatial_session_for_repository(self, repository_id, proxy):
"""Gets the session for retrieving spatial coverage of an asset for
the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osi... | python | def get_asset_spatial_session_for_repository(self, repository_id, proxy):
"""Gets the session for retrieving spatial coverage of an asset for
the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osi... | [
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return: (osid.repository.AssetSpatialSession) - an
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_spatial_assignment_session | def get_asset_spatial_assignment_session(self, proxy):
"""Gets the session for assigning spatial coverage to an asset.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSpatialAssignmentSession) - an
AssetSpatialAssignmentSession
raise: OperationFa... | python | def get_asset_spatial_assignment_session(self, proxy):
"""Gets the session for assigning spatial coverage to an asset.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.AssetSpatialAssignmentSession) - an
AssetSpatialAssignmentSession
raise: OperationFa... | [
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_asset_spatial_assignment_session_for_repository | def get_asset_spatial_assignment_session_for_repository(self, repository_id, proxy):
"""Gets the session for assigning spatial coverage of an asset for
the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
re... | python | def get_asset_spatial_assignment_session_for_repository(self, repository_id, proxy):
"""Gets the session for assigning spatial coverage of an asset for
the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
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arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_composition_lookup_session_for_repository | def get_composition_lookup_session_for_repository(self, repository_id, proxy):
"""Gets the OsidSession associated with the composition lookup
service for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
... | python | def get_composition_lookup_session_for_repository(self, repository_id, proxy):
"""Gets the OsidSession associated with the composition lookup
service for the given repository.
arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
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arg: repository_id (osid.id.Id): the Id of the repository
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.CompositionLookupSession) - the new
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mitsei/dlkit | dlkit/handcar/repository/managers.py | RepositoryProxyManager.get_composition_query_session | def get_composition_query_session(self, proxy):
"""Gets a composition query session.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.CompositionQuerySession) - a
CompositionQuerySession
raise: OperationFailed - unable to complete request
raise... | python | def get_composition_query_session(self, proxy):
"""Gets a composition query session.
arg proxy (osid.proxy.Proxy): a proxy
return: (osid.repository.CompositionQuerySession) - a
CompositionQuerySession
raise: OperationFailed - unable to complete request
raise... | [
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arg proxy (osid.proxy.Proxy): a proxy
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raise: OperationFailed - unable to complete request
raise: Unimplemented - supports_composition_query() is false
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