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vzg100/Post-Translational-Modification-Prediction
.ipynb_checkpoints/Lysine Acetylation -MLP-checkpoint.ipynb
mit
from pred import Predictor from pred import sequence_vector from pred import chemical_vector """ Explanation: Template for test End of explanation """ par = ["pass", "ADASYN", "SMOTEENN", "random_under_sample", "ncl", "near_miss"] for i in par: print("y", i) y = Predictor() y.load_data(file="Data/Trainin...
gaufung/Data_Analytics_Learning_Note
python-statatics-tutorial/advance-theme/Python-Advance.ipynb
mit
num=[1,2,3] iter(num) num.__iter__() num.__reversed__() it = iter(num) print it.next() print it.next() print it.next() print it.next() """ Explanation: Python 进阶 1 迭代器、生成表达式和生成器 1.1 迭代器(iterators) 迭代器对象拥有个next方法用来表达下一个对象,并且如果导到了最后一个,将会抛出一个StopIteration的异常 End of explanation """ (i for i in num) [i for i in num] ...
kingsgeocomp/applied_gsa
Practical-06-2. Exploration.ipynb
mit
from sklearn.decomposition import PCA """ Explanation: Dimensionality Reduction End of explanation """ o_dir = os.path.join('outputs','pca') if os.path.isdir(o_dir) is not True: print("Creating '{0}' directory.".format(o_dir)) os.mkdir(o_dir) pca = PCA() # Use all Principal Com...
ES-DOC/esdoc-jupyterhub
notebooks/inm/cmip6/models/sandbox-3/landice.ipynb
gpl-3.0
# DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'inm', 'sandbox-3', 'landice') """ Explanation: ES-DOC CMIP6 Model Properties - Landice MIP Era: CMIP6 Institute: INM Source ID: SANDBOX-3 Topic: Landice Sub-Topics: Glaciers, Ice. Properties: 3...
phanrahan/magmathon
notebooks/tutorial/coreir/coreir-tutorial/full_adder.ipynb
mit
import magma as m import mantle """ Explanation: FullAdder - Combinational Circuits This notebook walks through the implementation of a basic combinational circuit, a full adder. This example introduces many of the features of Magma including circuits, wiring, operators, and the type system. Start by importing Magma a...
jpn--/larch
book/example/legacy/300L_itinerary.ipynb
gpl-3.0
import larch, pandas, os, gzip larch.__version__ """ Explanation: 300L: Itinerary Choice Data End of explanation """ from larch.data_warehouse import example_file with gzip.open(example_file("arc"), 'rt') as previewfile: print(*(next(previewfile) for x in range(70))) """ Explanation: The example itinerary choi...
tkarna/cofs
demos/02-2d-tsunami.ipynb
mit
%matplotlib inline import matplotlib import matplotlib.pyplot as plt import scipy.interpolate # used for interpolation import pyproj # used for coordinate transformations import math from thetis import * """ Explanation: Simulating the 1945 Makran Tsunami using Thetis The 1945 Makran Tsunami was a large tsunami whic...
econ-ark/HARK
examples/Gentle-Intro/Gentle-Intro-To-HARK.ipynb
apache-2.0
# This cell has a bit of initial setup. You can click the triangle to the left to expand it. # Click the "Run" button immediately above the notebook in order to execute the contents of any cell # WARNING: Each cell in the notebook relies upon results generated by previous cells # The most common problem beginners hav...
henchc/EDUC290B
01-Intro-to-Computational-Tools-Python.ipynb
mit
age = 42 first_name = 'Ahmed' """ Explanation: Introduction to Computational Tools and Python This notebook introduces students to popular computational tools used in the Digital Humanities and Social Sciences and the research possibilities they create. It then provides an abbreviated introduction to Python focussing...
Vvkmnn/books
AutomateTheBoringStuffWithPython/lesson41.ipynb
gpl-3.0
from selenium import webdriver """ Explanation: Lesson 41: Controlling the Browser with the Selenium Module We download and parse webpages using beautifulsoup module, but some pages require logins and other dependencies to function properly. We can simulate these effects using selenium to launch a programmatic browse...
sz-workshop-2017/virtual-machine
notebooks/4.1 - Working with NLTK.ipynb
apache-2.0
# First we import the NLTK library and download # the data used in the examples in the book # the data will be stored in a directory on the # virtual machine but accessible through your notebooks import nltk nltk.download() from nltk.book import * """ Explanation: 4.1 - Working with NLTK In this notebook we will wo...
OriHoch/knesset-data-pipelines
jupyter-notebooks/committee meeting attendees.ipynb
mit
import yaml from dataflows import Flow, filter_rows, cache, dump_to_path from datapackage_pipelines_knesset.common_flow import load_knesset_data, load_member_names import tabulator """ Explanation: Example flow for processing and aggregating stats about committee meeting attendees and protocol parts See the DataFlows...
quantopian/research_public
notebooks/lectures/Position_Concentration_Risk/answers/notebook.ipynb
apache-2.0
import numpy as np import pandas as pd import scipy.stats as stats import matplotlib.pyplot as plt import math import cvxpy """ Explanation: Exercise Answer Key: Position Concentration Risk Lecture Link This exercise notebook refers to this lecture. Please use the lecture for explanations and sample code. https://www....
cgivre/oreilly-sec-ds-fundamentals
Notebooks/Unsupervised/K-Means Clustering Example.ipynb
apache-2.0
data = pd.DataFrame([[1, 2], [5, 8], [1.5, 1.8], [8, 8], [1, 0.6], [9, 11]], columns=['x','y']) print( data ) """ Explanation: K-Means Clustering Example In this example notebook, you will see how to implement K-Means Clustering in Python using Scik...
materialsvirtuallab/nano106
lectures/lecture_4_point_group_symmetry/Symmetry Computations on mmm (D_2h) Point Group.ipynb
bsd-3-clause
import numpy as np import itertools from sympy import symbols """ Explanation: NANO106 - Symmetry Computations on $mmm (D_{2h})$ Point Group by Shyue Ping Ong This notebook demonstrates the computation of orbits in the mmm point group. It is part of course material for UCSD's NANO106 - Crystallography of Materials. Un...
jbwhit/jupyter-best-practices
notebooks/07-Some_basics.ipynb
mit
# Create a [list] days = ['Monday', # multiple lines 'Tuesday', # acceptable 'Wednesday', 'Thursday', 'Friday', 'Saturday', 'Sunday', # trailing comma is fine! ] days # Simple for-loop for day in days: print(day) # Double for-loop for day in days: fo...
takanory/python-machine-learning
10 Minutes to pandas.ipynb
mit
# それぞれ必要なものを import するけど、こういう風に短く書くのがこっち界隈だと一般的らしい import pandas as pd import numpy as np import matplotlib.pyplot as plt """ Explanation: 10 Minutes to pandas写経 https://pandas.pydata.org/pandas-docs/stable/10min.html をやってみる End of explanation """ # Creating a Series by passing a list of values, letting pandas crea...
ES-DOC/esdoc-jupyterhub
notebooks/bcc/cmip6/models/sandbox-2/atmoschem.ipynb
gpl-3.0
# DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'bcc', 'sandbox-2', 'atmoschem') """ Explanation: ES-DOC CMIP6 Model Properties - Atmoschem MIP Era: CMIP6 Institute: BCC Source ID: SANDBOX-2 Topic: Atmoschem Sub-Topics: Transport, Emissions Co...
cloudmesh/book
notebooks/scipy/scipy-examples.ipynb
apache-2.0
import numpy as np # import numpy import scipy as sp # import scipy from scipy import stats # refer directly to stats rather than sp.stats import matplotlib as mpl # for visualization from matplotlib import pyplot as plt # refer directly to pyplot # rather than mpl.pyplot # for ex...
AntArch/Presentations_Github
20151008_OpenGeo_Reuse_under_licence/20151008_OpenGeo_Reuse_under_licence.ipynb
cc0-1.0
from IPython.display import YouTubeVideo YouTubeVideo('F4rFuIb1Ie4') ## PDF output using pandoc import os ### Export this notebook as markdown commandLineSyntax = 'ipython nbconvert --to markdown 20151008_OpenGeo_Reuse_under_licence.ipynb' print (commandLineSyntax) os.system(commandLineSyntax) ### Export this not...
tpin3694/tpin3694.github.io
mathematics/argmin_and_argmax.ipynb
mit
import numpy as np import pandas as pd np.random.seed(1) """ Explanation: Title: argmin and argmax Slug: argmin_and_argmax Summary: An explanation of argmin and argmax in Python. Date: 2016-01-23 12:00 Category: Mathematics Tags: Basics Authors: Chris Albon argmin and argmax are the inputs, x's, to a function, f...
quantopian/research_public
videos/miscellaneous/dfs/dfs_quant_finance.ipynb
apache-2.0
import pandas as pd df = local_csv('nba_data.csv') df['game_datetime'] = pd.to_datetime(df['game_date']) df = df.set_index(['game_datetime', 'player_id']) """ Explanation: Before running this notebook, run the 2 cells containing supporting functions at the bottom. Daily Fantasy Sports and Quantitative Finance A ca...
graphistry/pygraphistry
demos/demos_databases_apis/gpu_rapids/part_ii_gpu_cudf.ipynb
bsd-3-clause
#!pip install graphistry -q import pandas as pd import numpy as np import cudf import graphistry graphistry.__version__ # To specify Graphistry account & server, use: # graphistry.register(api=3, username='...', password='...', protocol='https', server='hub.graphistry.com') # For more options, see https://github.com...
shreyas111/Multimedia_CS523_Project1
Style_Transfer_Without_Style_Loss.ipynb
mit
%matplotlib inline import matplotlib.pyplot as plt import tensorflow as tf import numpy as np import PIL.Image """ Explanation: Style Transfer Our Changes: We have modified the code in such a way that the style loss and the gram matrices are not calculated. The algorithm only runs on content loss and the denoise loss....
rvuduc/cse6040-ipynbs
02--textproc.ipynb
bsd-3-clause
quote = """I wish you'd stop talking. I wish you'd stop prying and trying to find things out. I wish you were dead. No. That was silly and unkind. But I wish you'd stop talking.""" print (quote) def countWords1 (s): """Counts the number of words in a given input string.""" Lines = s.split ('\n') count = 0 ...
rasbt/pattern_classification
data_collecting/twitter_wordcloud.ipynb
gpl-3.0
%load_ext watermark %watermark -d -v -m -p twitter,pyprind,wordcloud,pandas,scipy,matplotlib """ Explanation: <br> <br> Turn Your Twitter Timeline into a Word Cloud Using Python <br> <br> Sections Requirements A. Downloading Your Twitter Timeline Tweets B. Creating the Word Cloud <br> <br> Requirements [back to top]...
GoogleCloudPlatform/ai-notebooks-extended
dataproc-hub-example/build/infrastructure-builder/mig/files/gcs_working_folder/examples/Python/storage/Cloud Storage client library.ipynb
apache-2.0
from google.cloud import storage """ Explanation: Cloud Storage client library This tutorial shows how to get started with the Cloud Storage Python client library. Create a storage bucket Buckets are the basic containers that hold your data. Everything that you store in Cloud Storage must be contained in a bucket. You...
ozak/CompEcon
notebooks/ipympl.ipynb
gpl-3.0
# Enabling the `widget` backend. # This requires jupyter-matplotlib a.k.a. ipympl. # ipympl can be install via pip or conda. %matplotlib widget import matplotlib.pyplot as plt import numpy as np # Testing matplotlib interactions with a simple plot fig = plt.figure() plt.plot(np.sin(np.linspace(0, 20, 100))); # Alway...
root-mirror/training
INSIGHTS2018/Exercises/WorkingWithFiles/WritingOnFilesExercise.ipynb
gpl-2.0
import ROOT """ Explanation: Writing on files This is a Python notebook in which you will practice the concepts learned during the lectures. Startup ROOT Import the ROOT module: this will activate the integration layer with the notebook automatically End of explanation """ rndm = ROOT.TRandom3(1) filename = "histos...
dr-nate/msmbuilder
examples/tICA-vs-PCA.ipynb
lgpl-2.1
%matplotlib inline import numpy as np from matplotlib import pyplot as plt xx, yy = np.meshgrid(np.linspace(-2,2), np.linspace(-3,3)) zz = 0 # We can only visualize so many dimensions ww = 5 * (xx-1)**2 * (xx+1)**2 + yy**2 + zz**2 c = plt.contourf(xx, yy, ww, np.linspace(-1, 15, 20), cmap='viridis_r') plt.contour(xx, ...
JohnCrickett/PythonExamples
Enums.ipynb
mit
from enum import Enum class MyEnum(Enum): first = 1 second = 2 third = 3 """ Explanation: Enums This notebook is an introduction to Python Enums as introduced in Python 3.4 and subsequently backported to other version of Python. More details can be found in the library documentation: https://docs.python.o...
tarashor/vibrations
py/notebooks/MatricesForOrthogonalCoordinates.ipynb
mit
from sympy import * from geom_util import * from sympy.vector import CoordSys3D N = CoordSys3D('N') alpha1, alpha2, alpha3 = symbols("alpha_1 alpha_2 alpha_3", real = True, positive=True) init_printing() %matplotlib inline %reload_ext autoreload %autoreload 2 %aimport geom_util """ Explanation: Matrix generation Ini...
tensorflow/tpu
tools/colab/regression_sine_data_with_keras.ipynb
apache-2.0
# Copyright 2018 The TensorFlow Hub Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by app...
ethen8181/machine-learning
keras/nn_keras_basics.ipynb
mit
# code for loading the format for the notebook import os # path : store the current path to convert back to it later path = os.getcwd() os.chdir(os.path.join('..', 'notebook_format')) from formats import load_style load_style(plot_style=False) os.chdir(path) # 1. magic to print version # 2. magic so that the notebo...
kevinjliang/Duke-Tsinghua-MLSS-2017
01C_MLP_CNN_Assignment.ipynb
apache-2.0
import tensorflow as tf from tensorflow.examples.tutorials.mnist import input_data # Import data mnist = input_data.read_data_sets("MNIST_data/", one_hot=True) # Helper functions for creating weight variables def weight_variable(shape): """weight_variable generates a weight variable of a given shape.""" initi...
krondor/nlp-dsx-pot
Lab 1 - IntroSpark - Student.ipynb
gpl-3.0
#Step 1.1 - Check spark version """ Explanation: Lab 1 - Hello Spark This Lab will show you how to work with Apache Spark using Python Step 1 - Working with Spark Context Step 1 - Invoke the spark context and extract what version of the spark driver application. Type<br> sc.version End of explanation """ #Step 2.1 ...
kubeflow/pipelines
samples/core/multiple_outputs/multiple_outputs.ipynb
apache-2.0
!python3 -m pip install 'kfp>=0.1.31' --quiet """ Explanation: Multiple outputs example This notebook is a simple example of how to make a component with multiple outputs using the Pipelines SDK. Before running notebook: Setup notebook server This pipeline requires you to setup a notebook server in the Kubeflow UI. A...
kdungs/teaching-SMD2-2016
solutions/2.ipynb
mit
%matplotlib inline import numpy as np import matplotlib.pyplot as plt import scipy.optimize plt.style.use('ggplot') from functools import partial """ Explanation: Übungsblatt 2: Kleinste Quadrate End of explanation """ def generate_sample(a, n=10, size=10000): ks = np.arange(1, n + 1) yss = np.random.poisso...
sraejones/phys202-2015-work
assignments/assignment06/ProjectEuler17.ipynb
mit
def number_to_words(n): """Given a number n between 1-1000 inclusive return a list of words for the number.""" # YOUR CODE HERE # English name of each digit/ place in dictionary one = { 0: '', 1: 'one', 2: 'two', 3: 'three', 4: 'four', ...
keras-team/keras-io
examples/audio/ipynb/uk_ireland_accent_recognition.ipynb
apache-2.0
!pip install -U -q tensorflow_io """ Explanation: English speaker accent recognition using Transfer Learning Author: Fadi Badine<br> Date created: 2022/04/16<br> Last modified: 2022/04/16<br> Description: Training a model to classify UK & Ireland accents using feature extraction from Yamnet. Introduction The following...
dataventures/workshops
4/0-Time-Series-Analysis.ipynb
mit
import pandas as pd import numpy as np import matplotlib.pylab as plt %matplotlib inline from matplotlib.pylab import rcParams rcParams['figure.figsize'] = 15, 6 """ Explanation: Time Series Analysis and Forecasting Sometimes the data we're working with has a special dependence on time as its primary predictive featur...
sdpython/pyquickhelper
_unittests/ut_helpgen/notebooks_svg/seance4_projection_population_correction.ipynb
mit
from jyquickhelper import add_notebook_menu add_notebook_menu() """ Explanation: Evolutation d'une population (correction) End of explanation """ from actuariat_python.data import population_france_2015 population = population_france_2015() df = population df.head(n=3) hommes = df["hommes"] femmes = df["femmes"] so...
ernestyalumni/MLgrabbag
nVidia_entrevue/Halloween_candy_max.ipynb
mit
sample_input_arr = np.array([5,10,2,4,3,2,1],dtype=np.int32) f = np.savetxt("sample_input.txt", sample_input_arr, fmt='%i',delimiter="\n") N_H = 10 # <= 10000 C_max = 5 # <= 1000 c_low = 0 c_high = 10 filename = "sample_input_1.txt" homes = np.random.randint(low=c_low,high=c_high, size=N_H) input_arr = np.insert(ho...
myfunprograms/deep_learning
project4/files/dlnd_language_translation_original.ipynb
gpl-3.0
""" DON'T MODIFY ANYTHING IN THIS CELL """ import helper import problem_unittests as tests source_path = 'data/small_vocab_en' target_path = 'data/small_vocab_fr' source_text = helper.load_data(source_path) target_text = helper.load_data(target_path) """ Explanation: Language Translation In this project, you’re going...
jpe3002/algorithms-1
elementary-sorting.ipynb
gpl-3.0
import pandas from bokeh.io import push_notebook, show, output_notebook from bokeh.charts import Bar from bokeh.plotting import figure, reset_output import random import time def exch(data, idx_a, idx_b): # todo: fix checking... tmp = data[idx_a] data[idx_a] = data[idx_b] data[idx_b] = tmp def c...
desihub/desimodel
doc/nb/DESI-0347-Updates.ipynb
bsd-3-clause
%pylab inline import os import astropy.table from desimodel.inputs import docdb from desimodel.inputs.throughput import load_spec_throughputs """ Explanation: DESI-347 Throughput Updates to DESIMODEL Study changes to DESIMODEL after updating throughputs from DESI-347. End of explanation """ def compare(old='v13',...
vitojph/2016progpln
notebooks/8-textblob.ipynb
mit
from textblob import TextBlob """ Explanation: textblob: otro módulo para tareas de PLN (NLTK + pattern) textblob es una librería de procesamiento del texto para Python que permite realizar tareas de Procesamiento del Lenguaje Natural como análisis morfológico, extracción de entidades, análisis de opinión, traducción ...
james-prior/cohpy
20170706-dojo-clear-to-end-of-table.ipynb
mit
%%script bash # Ignore this boring cell. # It allows one to do C in Jupyter notebook. cat >20170706_head.c <<EOF #include <stdlib.h> #include <stdio.h> #define LINES (3) #define COLUMNS (4) void print_buf(char buf[LINES][COLUMNS]) { for (int row = 0; row < LINES; row++) { for (int column = 0; column < C...
tensorflow/docs-l10n
site/ja/tutorials/distribute/multi_worker_with_keras.ipynb
apache-2.0
#@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under...
sdpython/teachpyx
_doc/notebooks/python/hypercube.ipynb
mit
from jyquickhelper import add_notebook_menu add_notebook_menu() """ Explanation: Hypercube et autres exercices Exercices autour de tableaux en plusieurs dimensions et autres exercices. End of explanation """ def u(n): if n <= 2: return 1 else: return u(n-1) + u(n-2) + u(n-3) u(5) """ Expla...
turbomanage/training-data-analyst
courses/machine_learning/deepdive2/launching_into_ml/solutions/repeatable_splitting.ipynb
apache-2.0
from google.cloud import bigquery """ Explanation: <h1> Repeatable splitting </h1> In this notebook, we will explore the impact of different ways of creating machine learning datasets. <p> Repeatability is important in machine learning. If you do the same thing now and 5 minutes from now and get different answers, t...
ContextLab/quail
docs/tutorial/naturalistic-analyses.ipynb
mit
import quail import numpy as np import seaborn as sns from scipy.spatial.distance import cdist %matplotlib inline egg = quail.load_example_data(dataset='naturalistic') """ Explanation: Analyzing naturalistic stimuli In traditional list-learning free recall experiments, remembering is often cast as a binary operation:...
bobmyhill/burnman
tutorial/tutorial_04_fitting.ipynb
gpl-2.0
import burnman import numpy as np import matplotlib.pyplot as plt """ Explanation: <h1>The BurnMan Tutorial</h1> Part 4: Fitting This file is part of BurnMan - a thermoelastic and thermodynamic toolkit for the Earth and Planetary Sciences Copyright (C) 2012 - 2021 by the BurnMan team, released under the GNU GPL v2 or...
murali-munna/pattern_classification
dimensionality_reduction/projection/linear_discriminant_analysis.ipynb
gpl-3.0
%load_ext watermark %watermark -v -d -u -p pandas,scikit-learn,numpy,matplotlib """ Explanation: Sebastian Raschka - Link to the containing GitHub Repository: https://github.com/rasbt/pattern_classification - Link to this IPython Notebook on GitHub: linear_discriminant_analysis.ipynb End of explanation """ feature...
giacomov/3ML
docs/notebooks/The_3ML_workflow.ipynb
bsd-3-clause
from threeML import * import matplotlib.pyplot as plt %matplotlib notebook plt.style.use('mike') import warnings warnings.filterwarnings('ignore') """ Explanation: The 3ML workflow Generally, an analysis in 3ML is performed in 3 steps: Load the data: one or more datasets are loaded and then listed in a DataList obje...
steinam/teacher
jup_notebooks/.ipynb_checkpoints/Versicherung_11FI3_On_Paper-checkpoint.ipynb
mit
%load_ext sql %sql mysql://steinam:steinam@localhost/versicherung_complete """ Explanation: Versicherung on Paper End of explanation """ %%sql -- meine Lösung select distinct(Land) from Fahrzeughersteller; %%sql -- deine Lösung select fahrzeughersteller.Land from fahrzeughersteller group by fahrzeughersteller....
ComputationalModeling/spring-2017-danielak
past-semesters/fall_2016/day-by-day/day17-analyzing-tweets-with-string-processing/In-Class-Strings.ipynb
agpl-3.0
%matplotlib inline import matplotlib.pyplot as plt from string import punctuation """ Explanation: Day 17 In-class assignment: Data analysis and Modeling in Social Sciences Part 3 The first part of this notebook is a copy of a blog post tutorial written by Dr. Neal Caren (University of North Carolina, Chapel Hill). Th...
PyPSA/PyPSA
examples/notebooks/transformer_example.ipynb
mit
import pypsa import numpy as np import pandas as pd network = pypsa.Network() network.add("Bus", "MV bus", v_nom=20, v_mag_pu_set=1.02) network.add("Bus", "LV1 bus", v_nom=0.4) network.add("Bus", "LV2 bus", v_nom=0.4) network.add( "Transformer", "MV-LV trafo", type="0.4 MVA 20/0.4 kV", bus0="MV bus",...
tpin3694/tpin3694.github.io
sql/sums_counts_max_averages.ipynb
mit
# Ignore %load_ext sql %sql sqlite:// %config SqlMagic.feedback = False """ Explanation: Title: Calculate Counts, Sums, Max, and Averages Slug: sums_counts_max_averages Summary: Calculate Counts, Sums, and Averages in SQL. Date: 2017-01-16 12:00 Category: SQL Tags: Basics Authors: Chris Albon Note: This tutoria...
rohithmohan/aesop
docs/barnase_barstar_directedmutagenesis.ipynb
gpl-3.0
from aesop import DirectedMutagenesis, plotScan_interactive, plotNetwork_interactive path_apbs = 'path\to\executable\apbs' path_coulomb = 'path\to\executable\coulomb' path_pdb2pqr = 'path\to\executable\pdb2pqr' jobname = 'directedscan' pdbfile = 'barnase_barstar.pdb' selstr = ['chain A', 'chain B'] target = ['re...
ugaliguy/Udacity
data-analyst-nanodegree/dandp0-bikeshareanalysis/Bay_Area_Bike_Share_Analysis.ipynb
mit
# import all necessary packages and functions. # See this post to fix potential bug that arose the first time I tried to run this block # http://stackoverflow.com/questions/38085174/import-numpy-throws-error-syntaxerror-unicode-error-unicodeescape-codec #-ca/38107818#38107818 import csv from datetime import datetime ...
agile-geoscience/xlines
notebooks/08_Read_and_write_LAS.ipynb
apache-2.0
import welly ls ../data/*.LAS """ Explanation: x lines of Python Reading and writing LAS files This notebook goes with the Agile blog post of 23 October. Set up a conda environment with: conda create -n welly python=3.6 matplotlib=2.0 scipy pandas You'll need welly in your environment: conda install tqdm # Should h...
LeosNoob/PyNotes
PyNotes/7. Funciones.ipynb
gpl-3.0
printfunc(3) def func(num): return(num**num+num) """ Explanation: Funciones Las funciones es una fragmento de código que recibe parámetros, ejecuta instrucciones y regresa resultados. Y nos permiten reutilizar código llamandola cuantas veces sea necesario. ``` python def función(parámetros): instrucci...
dit/dit
examples/MDBSI.ipynb
bsd-3-clause
import numpy as np import matplotlib.pyplot as plt %matplotlib inline from dit import ditParams, Distribution from dit.distconst import uniform ditParams['repr.print'] = ditParams['print.exact'] = True """ Explanation: Multivariate Dependencies Beyond Shannon Information This is a companion Jupyter notebook to the w...
ES-DOC/esdoc-jupyterhub
notebooks/inm/cmip6/models/sandbox-3/atmoschem.ipynb
gpl-3.0
# DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'inm', 'sandbox-3', 'atmoschem') """ Explanation: ES-DOC CMIP6 Model Properties - Atmoschem MIP Era: CMIP6 Institute: INM Source ID: SANDBOX-3 Topic: Atmoschem Sub-Topics: Transport, Emissions Co...
ProfessorKazarinoff/staticsite
content/code/matplotlib_plots/bar_plot_with_error_bars_jupyter_matplotlib.ipynb
gpl-3.0
import pandas as pd import numpy as np import matplotlib.pyplot as plt %matplotlib inline data_url = 'https://github.com/ProfessorKazarinoff/staticsite/raw/master/content/code/matplotlib_plots/3D-printed_tensile_test_data.xlsx' df = pd.read_excel(data_url) df.head() #https://raw.githubusercontent.com/guipsamora/pandas...
SolitonScientific/AtomicString
AFAString.ipynb
mit
import numpy as np import pylab as pl pl.rcParams["figure.figsize"] = 9,6 ################################################################### ##This script calculates the values of Atomic Function up(x) (1971) ################################################################### ################### One Pulse of atomic ...
bgalbraith/bandits
notebooks/Stochastic Bandits - Preference Estimation.ipynb
apache-2.0
%matplotlib inline import os import sys module_path = os.path.abspath(os.path.join('..')) if module_path not in sys.path: sys.path.append(module_path) import bandits as bd """ Explanation: Stochastic Multi-Armed Bandits - Preference Estimation These examples come from Chapter 2 of Reinforcement Learning: An Intro...
ES-DOC/esdoc-jupyterhub
notebooks/test-institute-1/cmip6/models/sandbox-3/atmos.ipynb
gpl-3.0
# DO NOT EDIT ! from pyesdoc.ipython.model_topic import NotebookOutput # DO NOT EDIT ! DOC = NotebookOutput('cmip6', 'test-institute-1', 'sandbox-3', 'atmos') """ Explanation: ES-DOC CMIP6 Model Properties - Atmos MIP Era: CMIP6 Institute: TEST-INSTITUTE-1 Source ID: SANDBOX-3 Topic: Atmos Sub-Topics: Dynamical...
aleph314/K2
Data Mining/Recommender Systems/Recommender-Engine_exercise.ipynb
gpl-3.0
import numpy as np import pandas as pd df = pd.read_csv('./data/ml-100k/u.data', sep='\t', header=None) df.columns = ['userid', 'itemid', 'rating', 'timestamp'] df['timestamp'] = pd.to_datetime(df['timestamp'],unit='s') df.head() """ Explanation: Recommender Engine Perhaps the most famous example of a recommender e...
cosmolejo/Fisica-Experimental-3
Constante_de_Planck/Constante_Plank.ipynb
gpl-3.0
import numpy as np #import pyfirmata as pyF from time import sleep import os import matplotlib.pyplot as plt %matplotlib inline from scipy import stats from scipy import constants as cons ###################################### ##VECTORES ###################################### led=[1.6325,2.424,2.566,3.7095] #ir,rojo,...
statsmodels/statsmodels.github.io
v0.13.1/examples/notebooks/generated/statespace_sarimax_internet.ipynb
bsd-3-clause
%matplotlib inline import numpy as np import pandas as pd from scipy.stats import norm import statsmodels.api as sm import matplotlib.pyplot as plt import requests from io import BytesIO from zipfile import ZipFile # Download the dataset dk = requests.get('http://www.ssfpack.com/files/DK-data.zip').content f = Bytes...
geektoni/shogun
doc/ipython-notebooks/structure/FGM.ipynb
bsd-3-clause
%pylab inline %matplotlib inline import os SHOGUN_DATA_DIR=os.getenv('SHOGUN_DATA_DIR', '../../../data') import numpy as np import scipy.io dataset = scipy.io.loadmat(os.path.join(SHOGUN_DATA_DIR, 'ocr/ocr_taskar.mat')) # patterns for training p_tr = dataset['patterns_train'] # patterns for testing p_ts = dataset['pat...
othersite/document
machinelearning/deep-learning-book/code/appendix_g_tensorflow-basics/appendix_g_tensorflow-basics.ipynb
apache-2.0
%load_ext watermark %watermark -a 'Sebastian Raschka' -d -p tensorflow,numpy """ Explanation: Accompanying code examples of the book "Introduction to Artificial Neural Networks and Deep Learning: A Practical Guide with Applications in Python" by Sebastian Raschka. All code examples are released under the MIT license. ...
GoogleCloudPlatform/vertex-ai-samples
notebooks/community/managed_notebooks/predictive_maintainance/predictive_maintenance_usecase.ipynb
apache-2.0
import os PROJECT_ID = "" # Get your Google Cloud project ID from gcloud if not os.getenv("IS_TESTING"): shell_output = !gcloud config list --format 'value(core.project)' 2>/dev/null PROJECT_ID = shell_output[0] print("Project ID: ", PROJECT_ID) """ Explanation: Predictive Maintenance Table of contents ...
EstevesDouglas/UNICAMP-FEEC-IA369Z
dev/checkpoint/2017-04-28-estevesdouglas-compartilhando-notebook.ipynb
gpl-3.0
-- Campainha IoT - LHC - v1.1 -- ESP Inicializa pinos, Configura e Conecta no Wifi, Cria conexão TCP -- e na resposta de um "Tocou" coloca o ESP em modo DeepSleep para economizar bateria. -- Se nenhuma resposta for recebida em 15 segundos coloca o ESP em DeepSleep. led_pin = 3 status_led = gpio.LOW ip_servidor = "192.1...
feststelltaste/software-analytics
prototypes/_archive/Production Coverage Demo Notebook.ipynb
gpl-3.0
import pandas as pd coverage = pd.read_csv("../input/spring-petclinic/jacoco.csv") coverage = coverage[['PACKAGE', 'CLASS', 'LINE_COVERED' ,'LINE_MISSED']] coverage['LINES'] = coverage.LINE_COVERED + coverage.LINE_MISSED coverage.head(1) """ Explanation: Context John Doe remarked in #AP1432 that there may be too much ...
yw-fang/readingnotes
machine-learning/Automate-Boring-Staff-Python-2016/ch13.ipynb
apache-2.0
wget https://nostarch.com/download/Automate_the_Boring_Stuff_onlinematerials_v.2.zip """ Explanation: Ch13 处理pdf和wrod文档 2019 July 24 at Kyoto Univ. pdf 和 word 文档都是二进制文件,由于包含多媒体信息(图标甚至视频),处理起来比普通文本复杂许多。好在一些先驱者已经写好了一些模块可以让我们来使用,致敬这帮人!哈哈。这章节我们主要专注从pdf中解析文本,或者从已有文档生成新的pdf。 13.1.1 从 pdf 提取文本 此处我们使用PyPDF2模块,注意它并不能帮助我们提取图像等多...
spacedrabbit/PythonBootcamp
Advanced Python Objects - Test.ipynb
mit
print bin(1024) print hex(1024) """ Explanation: Advanced Python Objects Test Advanced Numbers Problem 1: Convert 1024 to binary and hexadecimal representation: End of explanation """ print round(5.2322, 2) """ Explanation: Problem 2: Round 5.23222 to two decimal places End of explanation """ s = 'hello how are y...
dpshelio/2015-EuroScipy-pandas-tutorial
05 - Time series data.ipynb
bsd-2-clause
%matplotlib inline import pandas as pd import numpy as np import matplotlib.pyplot as plt try: import seaborn except: pass pd.options.display.max_rows = 8 """ Explanation: Working with time series data Some imports: End of explanation """ from IPython.display import HTML HTML('<iframe src=http://www.eea.eur...
GoogleCloudPlatform/tf-estimator-tutorials
08_Text_Analysis/04 - Text Classification - SMS Ham vs. Spam - Word Embeddings + LSTM.ipynb
apache-2.0
import tensorflow as tf from tensorflow import data from datetime import datetime import multiprocessing import shutil print(tf.__version__) MODEL_NAME = 'sms-class-model-01' TRAIN_DATA_FILES_PATTERN = 'data/sms-spam/train-*.tsv' VALID_DATA_FILES_PATTERN = 'data/sms-spam/valid-*.tsv' VOCAB_LIST_FILE = 'data/sms-spa...
zambzamb/zpic
python/Electron Plasma Waves.ipynb
agpl-3.0
import em1ds as zpic #v_the = 0.001 v_the = 0.02 #v_the = 0.20 electrons = zpic.Species( "electrons", -1.0, ppc = 64, uth=[v_the,v_the,v_the]) sim = zpic.Simulation( nx = 500, box = 50.0, dt = 0.0999/2, species = electrons ) sim.filter_set("sharp", ck = 0.99) #sim.filter_set("gaussian", ck = 50.0) """ Explanation: ...
sandeshkalantre/bdg-nanowire
Arahanov-Bohm Oscillations/Cylindrical Shell and Arahanov-Bohm Oscillations.ipynb
mit
import numpy as np import matplotlib.pyplot as plt %matplotlib inline import itertools import scipy.special # define a dummy class to pass parameters to functions class Parameters: def __init__(self): return # define the Hamiltonian def calc_H(params): t_z = params.t_z t_phi = params.t_phi N_z...
plumbwj01/Barcoding-Fraxinus
scanfasta.ipynb
apache-2.0
desired_contigs = ['Contig' + str(x) for x in [1131, 3182, 39106, 110, 5958]] desired_contigs """ Explanation: Using the two contig names you sent me it's simplest to do this: End of explanation """ grab = [c for c in contigs if c.name in desired_contigs] len(grab) """ Explanation: If you have a genuinely big file ...
ageron/ml-notebooks
09_up_and_running_with_tensorflow.ipynb
apache-2.0
# To support both python 2 and python 3 from __future__ import division, print_function, unicode_literals # Common imports import numpy as np import os try: # %tensorflow_version only exists in Colab. %tensorflow_version 1.x except Exception: pass # to make this notebook's output stable across runs def r...
GoogleCloudPlatform/vertex-ai-samples
notebooks/community/ml_ops/stage4/get_started_with_vertex_ml_metadata.ipynb
apache-2.0
import os # The Vertex AI Workbench Notebook product has specific requirements IS_WORKBENCH_NOTEBOOK = os.getenv("DL_ANACONDA_HOME") IS_USER_MANAGED_WORKBENCH_NOTEBOOK = os.path.exists( "/opt/deeplearning/metadata/env_version" ) # Vertex AI Notebook requires dependencies to be installed with '--user' USER_FLAG = ...
pastas/pastas
concepts/response_functions.ipynb
mit
import numpy as np import pandas as pd import pastas as ps import matplotlib.pyplot as plt ps.show_versions() """ Explanation: Response functions This notebook provides an overview of the response functions that are available in Pastas. Response functions describe the response of the dependent variable (e.g., ground...
ituethoslab/navcom-2017
exercises/Week 2-Qualitative Approaches to Quantitative Data/Exercises week 2.ipynb
gpl-3.0
import pandas as pd """ Explanation: Exercises week 2: Qualitative Approaches to Quantitative Data 1. We have seen network graphs We saw network graphs on the lecture. Where else have you seen them? What purpose do you remember they have served? Talk with neighbour for 10 min what do you think is necessary for making ...
albahnsen/ML_SecurityInformatics
notebooks/02-IntroPython.ipynb
mit
import sys print('Python version:', sys.version) import IPython print('IPython:', IPython.__version__) import numpy print('numpy:', numpy.__version__) import scipy print('scipy:', scipy.__version__) import matplotlib print('matplotlib:', matplotlib.__version__) import pandas print('pandas:', pandas.__version__) ...
empet/Plotly-plots
Tri-Surf-Plotly.ipynb
gpl-3.0
import numpy as np from scipy.spatial import Delaunay import plotly.plotly as py py.sign_in('empet','api_key') u=np.linspace(0,2*np.pi, 24) v=np.linspace(-1,1, 8) u,v=np.meshgrid(u,v) u=u.flatten() v=v.flatten() #evaluate the parameterization at the flattened u and v tp=1+0.5*v*np.cos(u/2.) x=tp*np.cos(u) y=tp*np.si...
DiXiT-eu/collatex-tutorial
unit8/unit8-collatex-and-XML/CollateX and XML, Part 2.ipynb
gpl-3.0
from collatex import * from lxml import etree import json,re """ Explanation: CollateX and XML, Part 2 David J. Birnbaum (&#100;&#106;&#98;&#112;&#105;&#116;&#116;&#64;&#103;&#109;&#97;&#105;&#108;&#46;&#99;&#111;&#109;, http://www.obdurodon.org), 2015-06-29 This example collates a single line of XML from four witnes...
facaiy/book_notes
Reinforcement_Learing_An_Introduction/Temporal_Difference_Learning/note.ipynb
cc0-1.0
Image('./res/fig6_1.png') Image('./res/TD_0.png') """ Explanation: Chapter 6 Temporal-Difference Learning DP, TD, and Monte Carlo methods all use some variation of generalized policy iteration: primarily differences in their approaches to the prediction problem. 6.1 TD Prediction constant-$\alpha$ MC: $V(S_t) \gets V...
mne-tools/mne-tools.github.io
0.15/_downloads/plot_mne_inverse_coherence_epochs.ipynb
bsd-3-clause
# Author: Martin Luessi <mluessi@nmr.mgh.harvard.edu> # # License: BSD (3-clause) import numpy as np import mne from mne.datasets import sample from mne.minimum_norm import (apply_inverse, apply_inverse_epochs, read_inverse_operator) from mne.connectivity import seed_target_indices, spec...
matt-graham/auxiliary-pm-mcmc
experiment_notebooks/Auxiliary Pseudo-Marginal MCMC - MI u updates and RD-SS theta updates.ipynb
mit
data_dir = os.path.join(os.environ['DATA_DIR'], 'uci') exp_dir = os.path.join(os.environ['EXP_DIR'], 'apm_mcmc') """ Explanation: Construct data and experiments directorys from environment variables End of explanation """ data_set = 'pima' method = 'apm(mi+rdss)' n_chain = 10 chain_offset = 0 seeds = np.random.rando...
keylime1/courses_12-752
yingyin2/Variable selection.ipynb
mit
import csv file = open('public_layout.csv','r') reader = csv.reader(file, delimiter=',') fullcsv = list(reader) """ Explanation: Firstly import csv and open the csv file. End of explanation """ dic_1=dict() print(dic_1) for i in range(801): data = np.genfromtxt('recs2009_public.csv',delimiter=',',skip_header=1...
enbanuel/phys202-2015-work
assignments/assignment10/ODEsEx02.ipynb
mit
%matplotlib inline import matplotlib.pyplot as plt import numpy as np from scipy.integrate import odeint from IPython.html.widgets import interact, fixed """ Explanation: Ordinary Differential Equations Exercise 1 Imports End of explanation """ def lorentz_derivs(yvec, t, sigma, rho, beta): """Compute the the de...
borja876/Thinkful-DataScience-Borja
Challenge+Boston+marathon.ipynb
mit
#Compare from a silhouette_score perspective kmeans against Spectral Clustering range_n_clusters = np.arange(10)+2 for n_clusters in range_n_clusters: # The silhouette_score gives the average value for all the samples. # This gives a perspective into the density and separation of the formed # clusters # Initi...
tommyod/abelian
docs/notebooks/functions.ipynb
gpl-3.0
# Imports from abelian from abelian import LCA, HomLCA, LCAFunc # Other imports import math import matplotlib.pyplot as plt from IPython.display import display, Math def show(arg): return display(Math(arg.to_latex())) """ Explanation: Tutorial: Functions on LCAs This is an interactive tutorial written with real ...
planet-os/notebooks
api-examples/gfs-api.ipynb
mit
%matplotlib inline import numpy as np import matplotlib.pyplot as plt import dateutil.parser import datetime from urllib.request import urlopen, Request import simplejson as json """ Explanation: <h1>Using the Planet OS API to Produce Weather Forecast Graphs</h1> Note: this notebook requires python3. This notebook is...
PMEAL/OpenPNM
examples/simulations/steady_state/fickian_diffusion_and_tortuosity.ipynb
mit
import numpy as np import openpnm as op %config InlineBackend.figure_formats = ['svg'] import matplotlib.pyplot as plt %matplotlib inline np.random.seed(10) ws = op.Workspace() ws.settings["loglevel"] = 40 np.set_printoptions(precision=5) """ Explanation: Fickian Diffusion and Tortuosity In this example, we will learn...