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The dataset viewer is not available for this split.
Cannot load the dataset split (in streaming mode) to extract the first rows.
Error code:   StreamingRowsError
Exception:    OSError
Message:      Couldn't deserialize thrift: TProtocolException: Invalid data
Deserializing page header failed.

Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/utils.py", line 99, in get_rows_or_raise
                  return get_rows(
                         ^^^^^^^^^
                File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
                  return func(*args, **kwargs)
                         ^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/utils.py", line 77, in get_rows
                  rows_plus_one = list(itertools.islice(ds, rows_max_number + 1))
                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2431, in __iter__
                  for key, example in ex_iterable:
                                      ^^^^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 1952, in __iter__
                  for key, pa_table in self._iter_arrow():
                                       ^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 1975, in _iter_arrow
                  for key, pa_table in self.ex_iterable._iter_arrow():
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 503, in _iter_arrow
                  for key, pa_table in iterator:
                                       ^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 350, in _iter_arrow
                  for key, pa_table in self.generate_tables_fn(**gen_kwags):
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/.venv/lib/python3.12/site-packages/datasets/packaged_modules/parquet/parquet.py", line 93, in _generate_tables
                  for batch_idx, record_batch in enumerate(
                                                 ^^^^^^^^^^
                File "pyarrow/_dataset.pyx", line 3904, in _iterator
                File "pyarrow/_dataset.pyx", line 3494, in pyarrow._dataset.TaggedRecordBatchIterator.__next__
                File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
              OSError: Couldn't deserialize thrift: TProtocolException: Invalid data
              Deserializing page header failed.

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Cite this dataset Song, K., Zhao, R., Liu, J., Wang, Y., Lindgren, E., Wang, Y., Chen, S., Xu, K., Liang, T., Ying, P., Xu, N., Zhao, Z., Shi, J., Wang, J., Lyu, S., Zeng, Z., Liang, S., Dong, H., Sun, L., Chen, Y., Zhang, Z., Guo, W., Qian, P., Sun, J., Erhart, P., Ala-Nissila, T., Su, Y., and Fan, Z. UNEP v1 2023 train. ColabFit, 2023. https://doi.org/10.60732/23c88dd7

This dataset has been curated and formatted for the ColabFit Exchange

This dataset is also available on the ColabFit Exchange:

https://materials.colabfit.org/id/DS_14h4rvviya0k_0

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Dataset Name

UNEP v1 2023 train

Description

The training set for UNEP-v1 (version 1 of Unified NeuroEvolution Potential), a model implemented in GPUMD.

Dataset authors

Keke Song, Rui Zhao, Jiahui Liu, Yanzhou Wang, Eric Lindgren, Yong Wang, Shunda Chen, Ke Xu, Ting Liang, Penghua Ying, Nan Xu, Zhiqiang Zhao, Jiuyang Shi, Junjie Wang, Shuang Lyu, Zezhu Zeng, Shirong Liang, Haikuan Dong, Ligang Sun, Yue Chen, Zhuhua Zhang, Wanlin Guo, Ping Qian, Jian Sun, Paul Erhart, Tapio Ala-Nissila, Yanjing Su, Zheyong Fan

Publication

https://doi.org/10.1038/s41467-024-54554-x

Original data link

https://zenodo.org/doi/10.5281/zenodo.10081676

License

CC-BY-4.0

Number of unique molecular configurations

104799

Number of atoms

6840534

Elements included

Ag, Al, Au, Cr, Cu, Mg, Mo, Ni, Pb, Pd, Pt, Ta, Ti, V, W, Zr

Properties included

energy, atomic forces, cauchy stress


Usage

  • ds.parquet : Aggregated dataset information.
  • co/ directory: Configuration rows each include a structure, calculated properties, and metadata.
  • cs/ directory : Configuration sets are subsets of configurations grouped by some common characteristic. If cs/ does not exist, no configurations sets have been defined for this dataset.
  • cs_co_map/ directory : The mapping of configurations to configuration sets (if defined).

ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:

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