WS22_nitrophenol / README.md
gpwolfe's picture
Update README.md for WS22_nitrophenol
f2f8440 verified
metadata
configs:
  - config_name: default
    data_files: co/*.parquet
  - config_name: info
    data_files: ds.parquet
license: cc-by-4.0
tags:
  - molecular dynamics
  - mlip
  - interatomic potential
pretty_name: WS22 nitrophenol

Cite this dataset Jr, M. P., Zhang, S., Dral, P. O., and Barbatti, M. WS22 nitrophenol. ColabFit, 2023. https://doi.org/10.60732/d91bf8fd

This dataset has been curated and formatted for the ColabFit Exchange

This dataset is also available on the ColabFit Exchange:

https://materials.colabfit.org/id/DS_s3qsg4c3hyk6_0

Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.

https://materials.colabfit.org


Dataset Name

WS22 nitrophenol

Description

Configurations of nitrophenol from WS22. The WS22 database combines Wigner sampling with geometry interpolation to generate 1.18 million molecular geometries equally distributed into 10 independent datasets of flexible organic molecules with varying sizes and chemical complexity. In addition to the potential energy and forces required to construct potential energy surfaces, the WS22 database provides several other quantum chemical properties, all obtained via single-point calculations for each molecular geometry. All quantum chemical calculations were performed with the Gaussian 09 program.

Dataset authors

Max Pinheiro Jr, Shuang Zhang, Pavlo O. Dral, Mario Barbatti

Publication

https://doi.org/10.1038/s41597-023-01998-3

Original data link

https://doi.org/10.5281/zenodo.7032333

License

CC-BY-4.0

Number of unique molecular configurations

119995

Number of atoms

1799925

Elements included

C, H, N, O

Properties included

energy, atomic forces


Usage

  • ds.parquet : Aggregated dataset information.
  • co/ directory: Configuration rows each include a structure, calculated properties, and metadata.
  • cs/ directory : Configuration sets are subsets of configurations grouped by some common characteristic. If cs/ does not exist, no configurations sets have been defined for this dataset.
  • cs_co_map/ directory : The mapping of configurations to configuration sets (if defined).

ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files: