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PO_1000954353361449757343769
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2025-04-16T21:27:22
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-734.198288
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P139
P
A
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139
1
0
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
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PO_1001006650724996747138959
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2025-04-16T17:50:49
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-738.306581
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P139
P
A
[ "P" ]
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139
1
0
[ 0, 0, 0 ]
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
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2025-04-16T21:43:25
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-738.416547
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P139
P
A
[ "P" ]
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139
1
0
[ 0, 0, 0 ]
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
PO_1001450305046764732742989
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2025-04-16T18:40:27
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-736.611042
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P139
P
A
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139
1
0
[ 0, 0, 0 ]
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
PO_1001539764305390239728044
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2025-04-16T18:55:36
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-736.660725
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P139
P
A
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139
1
0
[ 0, 0, 0 ]
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
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PO_1001591795609981113782253
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2025-04-16T17:54:49
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-738.357847
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[]
null
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P139
P
A
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139
1
0
[ 0, 0, 0 ]
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
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2025-04-16T18:35:01
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-736.843106
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P139
P
A
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139
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0
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
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2025-04-16T16:23:01
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-731.063506
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P138
P
A
[ "P" ]
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138
1
0
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null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
PO_1002267705815435624993393
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2025-04-16T15:44:22
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
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2025-04-16T17:21:07
DS_k059wtxqsksu_0
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VASP
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2025-04-16T17:31:22
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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139
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2025-04-17T17:56:16
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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2025-04-16T20:03:00
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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2025-04-16T21:43:16
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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138
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2025-04-16T20:15:40
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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138
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2025-04-16T16:48:30
DS_k059wtxqsksu_0
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VASP
DFT-PBE
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P139
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139
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null
null
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PO_4916133406742325882825749
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2025-04-16T18:29:07
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
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P139
P
A
[ "P" ]
[ 1 ]
[ 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, ...
139
1
0
[ 0, 0, 0 ]
[ "phosphorene_dataset_2111" ]
null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
PO_4923227955518124696088603
492322795551812469608860362774073023689570441329429916888637817667216399324410806143772374576643193620942379955925869737444874964000790853809066244325228
2025-04-16T20:48:59
DS_k059wtxqsksu_0
1
VASP
DFT-PBE
-733.415792
[ [ -0.291317, -0.713407, -0.127896 ], [ 0.463716, 0.11486, -0.46594 ], [ -0.501674, -0.750749, -0.731648 ], [ -0.914423, 0.688447, 0.562021 ], [ -0.192539, 0.793089, -0.198553 ], [ 0.971355, 0.325673, -0.221367 ], [ -...
[]
null
null
null
null
null
null
1.934062
0.938595
null
CO_1256797991501722099547768
1256797991501722099547768416700376975373814021043252877969238935737128867977420300294237428912997298707236013893660316224079578493429586375621998009607789
12141367247015552811155708597076611381383273941859934124824935464863731009500529630155217104061047878488642223287746279531231643892542674763314387449142766
[ [ 22.409346332570003, 0, 0 ], [ 0, 22.3924324609, 0 ], [ 0, 0, 22.1308059692 ] ]
[ [ 1.64517, 0.4188, 6.37322 ], [ 1.79876, 4.71633, 6.06427 ], [ 1.86582, 9.20276, 6.19414 ], [ 1.75448, 13.32664, 6.20625 ], [ 1.67975, 18.02292, 6.22437 ], [ 4.70906, 0.21894, 6.24807 ], [ 5.06042, 4.46313, 6...
[ true, true, true ]
P139
P
A
[ "P" ]
[ 1 ]
[ 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, ...
139
1
0
[ 0, 0, 0 ]
[ "phosphorene_dataset_2347" ]
null
data/MD/4701/MD_9684273501371961168594701.json
null
null
null
{"input": {"EDIFFG": {"value": 0.01, "unit": "eV/A"}, "ENCUT": {"value": 600, "unit": "eV"}, "KPOINTS": "3x3x3", "kpoints-scheme": "gamma-centered"}, "hash": "9684273501371961168594701658873078804830355239506162968736149328747315478969067672224662649906457857472737591125290215910014553908380881816420111183855748", "id": "MD_9684273501371961168594701"}
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Cite this dataset Kývala, L., Angeletti, A., Franchini, C., and Dellago, C. defected phosphorene ACS 2023. ColabFit, 2023. https://doi.org/10.60732/87b2341a

This dataset has been curated and formatted for the ColabFit Exchange

This dataset is also available on the ColabFit Exchange:

https://materials.colabfit.org/id/DS_k059wtxqsksu_0

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Dataset Name

defected phosphorene ACS 2023

Description

This dataset contains pristine monolayer phosphorene as well as structures with monovacancies which were used to train an artificial neural network (ANN) for use with a high-dimensional neural network potentials molecular dynamics (HDNNP-MD) simulation. The publication investigates the mechanism and rates of the processes of defect diffusion, as well as monovacancy-to-divacancy defect coalescence.

Dataset authors

Lukáš Kývala, Andrea Angeletti, Cesare Franchini, Christoph Dellago

Publication

https://doi.org/10.1021/acs.jpcc.3c05713

Original data link

https://doi.org/10.5281/zenodo.8421094

License

CC-BY-4.0

Number of unique molecular configurations

5085

Number of atoms

722033

Elements included

P

Properties included

energy, atomic forces


Usage

  • ds.parquet : Aggregated dataset information.
  • co/ directory: Configuration rows each include a structure, calculated properties, and metadata.
  • cs/ directory : Configuration sets are subsets of configurations grouped by some common characteristic. If cs/ does not exist, no configurations sets have been defined for this dataset.
  • cs_co_map/ directory : The mapping of configurations to configuration sets (if defined).

ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:

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