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string
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string
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int32
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string
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string
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PO_1000883239576228851293742
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2025-04-17T17:35:57
DS_e94my2wrh074_0
1
ORCA
MP2
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data/MD/5202/MD_1086845055867124744315202.json
data/MD/2135/MD_3226560633592386329262135.json
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PO_1001072391447703007887373
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2025-04-16T16:49:30
DS_e94my2wrh074_0
1
ORCA
GAP
-12,460.584395
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data/MD/5202/MD_1086845055867124744315202.json
data/MD/0305/MD_1013733742346177905310305.json
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PO_1001193873151680917205151
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2025-04-16T21:23:51
DS_e94my2wrh074_0
1
ORCA
MP2
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data/MD/5790/MD_3259295128280663988385790.json
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PO_1001156167282246473447093
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2025-04-16T18:04:40
DS_e94my2wrh074_0
1
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data/MD/5202/MD_1086845055867124744315202.json
data/MD/9190/MD_5668466857463949360049190.json
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PO_1001213679441418379456403
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2025-04-16T16:51:35
DS_e94my2wrh074_0
1
ORCA
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data/MD/5202/MD_1086845055867124744315202.json
data/MD/2239/MD_1610278009815133809322239.json
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PO_1001330271483892072121850
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2025-04-16T17:44:43
DS_e94my2wrh074_0
1
ORCA
MP2
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data/MD/5202/MD_1086845055867124744315202.json
data/MD/0758/MD_5295420649148468673650758.json
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2025-04-16T18:43:26
DS_e94my2wrh074_0
1
ORCA
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PO_1001309700630245196197785
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2025-04-16T17:55:11
DS_e94my2wrh074_0
1
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2025-04-16T16:55:04
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2025-04-16T16:00:44
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2025-04-16T21:37:17
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2025-04-17T17:56:16
DS_e94my2wrh074_0
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2025-04-16T18:43:09
DS_e94my2wrh074_0
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2025-04-16T15:42:40
DS_e94my2wrh074_0
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2025-04-16T20:04:30
DS_e94my2wrh074_0
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2025-04-16T15:40:19
DS_e94my2wrh074_0
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[ [ -1.32985210718351, 0.24719070118186662, 1.9425987127204583 ], [ -0.6647545426871148, 0.6723286484211737, 1.321487986667356 ], [ -2.5477021459655695, 0.14299380363281106, 1.241012400088468 ], [ -2.4591177650237257, -0.24932012429311642, 0.2280175302081828...
[ false, false, false ]
C6H24O6
CH4O
A4BC
[ "C", "H", "O" ]
[ 0.16666666666666666, 0.6666666666666666, 0.16666666666666666 ]
[ 8, 1, 6, 1, 1, 1, 8, 1, 6, 1, 1, 1, 8, 1, 6, 1, 1, 1, 8, 1, 6, 1, 1, 1, 8, 1, 6, 1, 1, 1, 8, 1, 6, 1, 1, 1 ]
36
3
0
[ 0, 0, 0 ]
[ "6meoh-ase.md-orca.mp2.def2tzvp.300k-0", "6meoh-ase.md-orca.mp2.def2tzvp.300k-1" ]
null
data/MD/5202/MD_1086845055867124744315202.json
data/MD/1137/MD_1194385600653629259511137.json
null
{"kinetic_energy": 43.181177657896, "kinetic_units": "kcal/mol", "velocities": [[0.005500453312425168, -0.002854329606937562, 0.002610487973927398], [0.007930447693555446, -0.025065015971662927, -0.04693750964918042], [0.0034409131549377136, -0.0027321910048477296, -0.005934093113204556], [0.009683676612861448, 0.00636...
{"hash": "10868450558671247443152026947160338505683745266658651051718065983487878962987857602829315249215796444208488632888003673539585986066311769564391053988452926", "id": "MD_1086845055867124744315202"}
PO_1000394674028465138292683
10003946740284651382926833021802066837882759049381594306556423630339441784030592818089212792636315762931968452783900128865409341138749797336195974296443131
2025-04-16T16:31:50
DS_e94my2wrh074_0
1
ORCA
SchNet
-12,460.428863
[ [ 0.3211935039477393, 0.33856438389260507, -0.2587061654062515 ], [ -0.11109256335513473, 0.5010109811032354, 0.5522781351321531 ], [ -0.25107644556056413, -1.2767737777435413, -0.5664164962223027 ], [ 0.6619554329435869, 1.5552870058212775, -1.02502435765...
[]
null
null
null
null
null
null
5.120859
1.577115
null
CO_2000337525465086084610283
2000337525465086084610283247160306657789232210400729722344294179985198477589246760405778890588480764025597326112538261633063942853992705534824556263390392
3043424879011744852143634665492538189934912883306929436505546231089862734059665758144248312812783196776865228116038167478876469895709848530450254467081229
[ [ 0, 0, 0 ], [ 0, 0, 0 ], [ 0, 0, 0 ] ]
[ [ 1.6771386854896888, -2.6419932073619177, -0.09046945845449399 ], [ 1.19279804196979, -3.481383552399644, -0.08796874959218398 ], [ 1.256375681315629, -1.9972234605565622, 0.516244698915912 ], [ -1.9753297577878064, -2.042392525082609, 1.7497687206356722 ...
[ false, false, false ]
H12O6
H2O
A2B
[ "H", "O" ]
[ 0.6666666666666666, 0.3333333333333333 ]
[ 8, 1, 1, 8, 1, 1, 8, 1, 1, 8, 1, 1, 8, 1, 1, 8, 1, 1 ]
18
2
0
[ 0, 0, 0 ]
[ "6h2o-ase.md-schnet.train1000.300k-2", "6h2o-ase.md-schnet.train1000.300k-0", "6h2o-ase.md-schnet.train1000.300k-1" ]
null
data/MD/5202/MD_1086845055867124744315202.json
data/MD/2104/MD_6714058415115396173262104.json
null
{"kinetic_energy": 16.875065359241113, "kinetic_units": "kcal/mol", "velocities": [[0.0006780404015305282, -0.002696589847994423, -0.0019400540575169453], [-0.0211283602196279, -0.0009302398954843309, -0.004921053135230267], [-0.002784311240908439, -0.022274141776244722, -0.002572046260532689], [0.001960776946239544, -...
{"hash": "10868450558671247443152026947160338505683745266658651051718065983487878962987857602829315249215796444208488632888003673539585986066311769564391053988452926", "id": "MD_1086845055867124744315202"}
End of preview. Expand in Data Studio

Cite this dataset Maldonado, A. M. mbGDML maldonado 2023. ColabFit, 2023. https://doi.org/10.60732/717087e2

This dataset has been curated and formatted for the ColabFit Exchange

This dataset is also available on the ColabFit Exchange:

https://materials.colabfit.org/id/DS_e94my2wrh074_0

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Dataset Name

mbGDML maldonado 2023

Description

Configurations of water, acetonitrile and methanol, simulated with ASE and modeled using a variety of software and methods: GAP, SchNet, GDML, ORCA and mbGDML. Forces and potential energy included; metadata includes kinetic energy and velocities.

Dataset authors

Alex M. Maldonado

Publication

https://doi.org/10.26434/chemrxiv-2023-wdd1r

Original data link

https://doi.org/10.5281/zenodo.7112197

License

CC-BY-4.0

Number of unique molecular configurations

24509

Number of atoms

711324

Elements included

C, H, N, O

Properties included

energy, atomic forces


Usage

  • ds.parquet : Aggregated dataset information.
  • co/ directory: Configuration rows each include a structure, calculated properties, and metadata.
  • cs/ directory : Configuration sets are subsets of configurations grouped by some common characteristic. If cs/ does not exist, no configurations sets have been defined for this dataset.
  • cs_co_map/ directory : The mapping of configurations to configuration sets (if defined).

ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:

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