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results/cellpaint_posh_results.json
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| 1 |
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{
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"dataset": "CellPaint-POSH POC",
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"cell_line": "A549",
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"n_genes": 116,
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"n_sgrnas": 1145,
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"n_cells_total": 95015,
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"n_classes": 6,
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"classes": [
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"actin / kinesin",
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"golgi-ER retrograde",
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"microtubule / dynein",
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"mitochondrial translation",
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"proteasome",
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"unfolded protein response"
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],
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"n_features": 1278,
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"sgrnas_per_gene_median": 10.0,
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"gene_disjoint": {
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"gene_overlap_mean": 0.0,
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"gene_overlap_std": 0.0,
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"pca_lr": {
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"macro_f1_mean": 0.4655933728756081,
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"macro_f1_std": 0.04647576329285101,
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"balanced_accuracy_mean": 0.47137340504341035,
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"top1_accuracy_mean": 0.5173831993984725
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},
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"knn1": {
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"macro_f1_std": 0.023862965647123837,
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"balanced_accuracy_mean": 0.38770573734037683,
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"top1_accuracy_mean": 0.44018845098724774
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},
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"knn5": {
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"top1_accuracy_mean": 0.4515018955617522
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},
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"metadata_only": {
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"balanced_accuracy_mean": 0.2584504485110932,
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},
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"label_shuffle": {
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"top1_accuracy_mean": 0.16658105495582018
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}
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},
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"leaky_sgrna": {
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"gene_overlap_mean": 1.0,
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"gene_overlap_std": 0.0,
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"knn1": {
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},
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"knn5": {
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"metadata_only": {
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}
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},
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"mechanism_checks": {
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"same_gene_nn_rate_mean": 0.09519650655021834,
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"same_gene_nn_rate_std": 0.011846864599345447,
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"correct_when_same_gene_mean": 1.0,
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"inclusion_checks": {
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},
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