human_dcm_hcm_nf.dataset does not contain cardiomyocytes cell type
Hello,
Thank you for the tool. I wanted to do perturbation with the cardiomyocytes as a practice, but seems like the dataset in the example do not contain cardiomyocytes cell type.
Thanks for your question! It should contain cardiomyocytes. We'd suggest you print the set of values that occurs in the cell type column of the data to determine how the cells are labeled. If you still can't find them, please reply with the set of cell type values here.
Hello,
I am sorry, I still don't see cardiomyocytes.
I downloaded the 3 files to local.
https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/resolve/main/example_input_files/cell_classification/disease_classification/human_dcm_hcm_nf.dataset/dataset.arrow
I see the celltypes in the attached screenshot
Thanks for following up. I downloaded the file directly from the repository and the cardiomyocytes are present (see below). The "cell_type" column you printed is for a different file. There are cardiomyocytes in your file actually (e.g. "Ventricle cardiomyocyte") but of course a heart dataset wouldn't have kidney cells, etc. I would suggest you check again which file you downloaded and which file you loaded to look at the column.
