cytolexmuta / summary.json
Zane12518's picture
Add cytolexmuta ProteinGym zero-shot scores
27a7b85 verified
Raw
History Blame Contribute Delete
1.99 kB
{
"assays": 217,
"combined_scores": "full217_cytolexmuta_scores.csv.gz",
"created_on": "2026-08-15",
"formula": "0.5*robust_z(0.5*ESM-C+0.5*ProSST)+0.25*robust_z(GEMME)+0.25*robust_z(ESM-IF1)",
"method_name": "cytolexmuta",
"optimizer_steps": 0,
"per_assay_score_dir": "scores/cytolexmuta",
"performance": {
"function_category_spearman": {
"Activity": 0.5242,
"Binding": 0.46937500000000004,
"Expression": 0.5368333333333334,
"OrganismalFitness": 0.49091015625,
"Stability": 0.6523181818181819
},
"official_function_balanced_spearman_3dp": 0.535,
"official_function_balanced_spearman_unrounded": 0.5347273342803031
},
"schema": "cytolexmuta_submission_package_v1",
"score_bundle": "cytolexmuta_scores_full217.tar.gz",
"score_column": "cytolexmuta",
"source_metric_artifact": "artifacts/official_benchmark/pg_zero_shot_esm_if1_fixed_fusion_v1_20260813/summary.json",
"source_prediction_artifact": "artifacts/official_benchmark/pg_zero_shot_esm_if1_predictions_v1_20260813/full217_predictions.csv.gz",
"status": "prepared_pending_gemme_provenance_decision",
"submission_blockers": [
{
"blocker": "GEMME/JET2 provenance/license decision",
"recommended_resolution": "Submit as a score-level ensemble referencing ProteinGym GEMME baseline without redistributing GEMME/JET2, or obtain explicit GEMME/JET2 provenance before claiming independent runtime reproduction."
}
],
"target_columns_in_scores": false,
"training": false,
"validation": {
"no_cryptographic_hashing": true,
"per_assay_files": 217,
"sample_headers": {
"A0A140D2T1_ZIKV_Sourisseau_2019.csv": [
"mutant",
"cytolexmuta"
],
"A0A192B1T2_9HIV1_Haddox_2018.csv": [
"mutant",
"cytolexmuta"
],
"A0A1I9GEU1_NEIME_Kennouche_2019.csv": [
"mutant",
"cytolexmuta"
]
},
"validated_rows": 2465767
},
"variant_rows": 2465767
}