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acknowledgement
|
10.21203/rs.3.rs-1805970/v1
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doi10.21203/rs.3.rs-1805970/v1
|
This work was supported by National Institute of Health (NIH) National Heart, Lung and Blood Institute award R01HL148672 (JSB/BM) and NIH National Institute of Allergy and Infectious Diseases training grant T32AI95190-10 (SJG).
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acknowledgement
|
10.48550/arxiv.1712.03571
|
doi10.48550/arxiv.1712.03571
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I should express my gratitude to Roman Romanov, who introduced this problem for me and helped me with solving the problem and writing the column. The work was supported by the RSF Grant RSF 17-11-01064.
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acknowledgement
|
10.26434/chemrxiv-2024-pdbsm-v2
|
doi10.26434/chemrxiv-2024-pdbsm-v2
|
European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No. 715060). ENW-XS grant (grant number: OCENW.XS21.4.038) from the Dutch Research Council (NWO). | The authors thank for financial support the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No. 715060). P.M.P.-G. acknowledges funding from an ENW-XS grant (grant number: OCENW.XS21.4.038) from the Dutch Research Council (NWO). C.F.G. and P.V. acknowledge the Netherlands Organization for Scientific Research (NWO). This work made use of the Dutch national e-infrastructure with the support of the SURF Cooperative using grant no. EINF-3520.
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| false
| false
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acknowledgement
|
10.1101/859280
|
doi10.1101/859280
|
This research has received funding from Ministerio de Ciencia, Innovación y Universidades (MICIU), Agencia Estatal de Investigación (AEI) and Fondo Europeo de Desarrollo Regional, UE (RTI2018- 100789-B-I00); and the Catalan Government [SGR2017/801 and #016FI_B 00272 to CR-A]. JG is funded by the European Commission (H2020-ERC-2014-CoG-647900) and the MINECO/AEI/FEDER, EU (BFU2017-82937-P). LAPJ lab was funded by the Spanish Ministry of Science and Innovation (ISCIII-FEDER P13/02481), the Catalan Department of Economy and Knowledge (SGR2014/1468, SGR2017/1974 and ICREA Acadèmia), and also acknowledges support from the Spanish Ministry of Economy and Competiveness "Programa de Excelencia María de Maeztu" (MDM-2014-0370). This research has been conducted using the UK Biobank Resource under Application Number 43983. The Genotype-Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS.
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acknowledgement
|
10.22541/essoar.171320253.37867733/v1
|
doi10.22541/essoar.171320253.37867733/v1
|
R.L. acknowledges funding from French state aid, managed by ANR under the "Investissements d'avenir" programme (ANR-16-CONV-0003) and from EU's Horizon Europe Research and Innovation Programme under Grant Agreement No. 101060423. A.B. was funded by the European Union (ERC StG, ForExD, grant agreement No. 101039567). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. AMRP, MJM, RMA, MJS, GJN, PC were supported by the European Commission, Horizon 2020 Framework Programme (VERIFY, grant no. 776810), AMRP, MJM, RMA by grant agreement no. 958927 (CoCO2), AMRP by grant agreement no. 101081322 (AVENGERS) and RMA, PC and PP by grant agreement no. 10108139 (EYE-CLIMA). P.K.P. is partly supported by the Environmental Research and Technology Development Fund (JPMEERF21S20800) of the MOEJ and ERCA. G.F. was supported by the Horizon Europe Project ECO2ADAPT (grant agreement No. 101059498). MJS and GJN were partly funded by Ministry Agriculture, Nature Management and Food Quality in | Netherlands and its Knowledge Bases programme. GJN acknowledges RESONATE project (H2020 Grant 101000574) and the Horizon Europe Project SUPERB (grant 101036849) and FORWARDS (grant 101084481). For the aggregated national forest inventory data behind the EFISCEN simulations MJS and GJN acknowledge the national forest inventories of 27 EU countries, CW was funded by the Natural Environment Research Council through its grants to the UK National Centre for Earth Observation (NCEO; NERC grant numbers NE/R016518/1 and NE/N018079/1). CTE2021 runs were supported by the HPC cluster Aether at the University of Bremen, financed by DFG within the scope of the Excellence Initiative. PR acknowledges funding from the FRS-FRNS PDR project T.0191.23 CH4-lakes.
| true
| true
| false
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acknowledgement
|
10.48550/arxiv.math/0508168
|
doi10.48550/arxiv.math/0508168
|
The second author is supported by Netherlands Organisation for Scientific Research (NWO) under project number 613.006.572.
| true
| false
| false
|
acknowledgement
|
10.48550/arxiv.2112.07873
|
doi10.48550/arxiv.2112.07873
|
This work was supported in part by the Natural Science Foundation of China under Grant 62072421, 62102386, 62002334, 62121002, and U20B2047, Anhui Science Foundation of China under Grant 2008085QF296, Exploration Fund Project of University of Science and Technology of China under Grant YD3480002001, and by Fundamental Research Funds for the Central Universities under Grant WK2100000011 and WK5290000001.
| true
| true
| false
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acknowledgement
|
10.48550/arxiv.2009.00518
|
doi10.48550/arxiv.2009.00518
|
This work was not directly supported by any funding agency, but it would not have been possible without resources provided by the Department of Physics at the University of Illinois at Urbana-Champaign.
| true
| false
| false
|
acknowledgement
|
10.48550/arxiv.2207.05615
|
doi10.48550/arxiv.2207.05615
|
This work has received support from Agence Nationale de la Recherche (ANR) for the project APY, with reference ANR-20CE38-0011-02. This work was granted access to the HPC resources of IDRIS under the allocation 2022-AD011012603 made by GENCI Code is available at https://github.com/Nicolas1203/ossgcl
| true
| false
| true
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acknowledgement
|
10.1101/611269
|
doi10.1101/611269
|
We would like to thank Virgilio L. Lew and Pietro Cicuta from the University of Cambridge for insightful and fruitful discussions. S.H. acknowledges support by the International Helmholtz Research School of Biophysics and Soft Matter (IHRS BioSoft). D.A.F. acknowledges funding by the Alexander von Humboldt Foundation. We also gratefully acknowledge the computing time granted through JARA-HPC on the supercomputer JURECA (30) at Forschungszentrum Jülich.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.1612.06523
|
doi10.48550/arxiv.1612.06523
|
The second author was partially supported by PAPIIT IA103915 and CONACyT project 219775. The third author was partially supported by PAPIIT IN114016 and CONACyT project 219827. Finally, we would like to acknowledge the support from Center of Innovation in Mathematics, CINNMA A.C.
| true
| false
| false
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acknowledgement
|
10.1101/2020.11.23.20236778
|
doi10.1101/2020.11.23.20236778
|
We would like to thank colleagues who helped collating data and coordinating activities (Paulina Dluzynska and Nichole Jeffries) as well as colleagues in the departments of colorectal surgery, gastroenterology, radiology and biochemistry at the Western General Hospital, Edinburgh as well as colleagues in primary care for their help in triaging patients and timely reporting of results. MGD is funded by CRUK and MRC. FVND is funded by the Chief Scientist Office.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.1807.07951
|
doi10.48550/arxiv.1807.07951
|
DMF acknowledges support from FAPESP grant 2016/16844-1.
| true
| false
| false
|
acknowledgement
|
10.48550/arxiv.1012.1621
|
doi10.48550/arxiv.1012.1621
|
This work has been funded by the project PCI-EUROMED A/016116/08, P07-TIC- 02978 (Junta de Andalucía), and TIN2008-04844 (Spanish Ministry of Science and Innovation).
| true
| false
| false
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acknowledgement
|
10.21203/rs.2.18594/v2
|
doi10.21203/rs.2.18594/v2
|
Funding: This research was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education(NRF-2018R1D1A1A02086025). No benefits in any form have been received or will be received from a commercial party related directly or indirectly to the subject of this article.
| true
| false
| false
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acknowledgement
|
10.1101/840603
|
doi10.1101/840603
|
We are grateful for financial support from the National Science Foundation, including MCB grant number 1150138 to J.J.S. and Graduate Research Fellowships to A.M.J. and J.T.A. Additionally, this work was supported by Office of Naval Research grant N00014-17-1-2639 (to J.J.S.). AMJ was partially funded by a training fellowship from the Keck Center of the Gulf Coast Consortia, on the Houston Area Molecular Biophysics Program, National Institute of General Medical Sciences (NIGMS) T32GM008280. JTA was partially supported by a Lodieska Stockbridge Vaughn Fellowship.
| true
| false
| false
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acknowledgement
|
10.1101/2022.11.08.515655
|
doi10.1101/2022.11.08.515655
|
This work is supported by National Natural Science Foundation of China (Grant No. 32070973, 31871481), Fundamental Research Funds for the Central Universities (Program No. 2662022JC002). | Funder Grant reference number Author National Natural Science Foundation of China 32070973 Zhiqiang Dong National Natural Science Foundation of China 31871481 Zhiqiang Dong Fundamental Research Funds for the Central Universities 2662022JC002 Zhiqiang Dong
| true
| false
| false
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acknowledgement
|
10.1101/2021.01.06.425363
|
doi10.1101/2021.01.06.425363
|
This work was supported by Decit/SCTIE/BrMoH/CNPq (440685/2016-8), by CAPES (88887.130716/2016-00) and by the European Union’s Horizon 2020 Research and Innovation Programme under ZIKAlliance Grant Agreement no. 734548. MG and LCJA is supported by Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ). JL is supported by a lectureship from the Department of Zoology, University of Oxford.
| true
| false
| false
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acknowledgement
|
10.1101/2021.01.28.21250676
|
doi10.1101/2021.01.28.21250676
|
CJC and SJR were supported by funding to the Viral Emergence Research Initiative (VERENA) consortium including NSF BII 2021909. CAL, HDG, and SJR were funded by NIH 1R01AI136035-01. ALW and SJR were additionally funded by CDC grant 1U01CK000510-01: Southeastern Regional Center of Excellence in Vector-Borne Diseases: The Gateway Program. This publication was supported by the Cooperative Agreement Number above from the Centers for Disease Control and Prevention. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the Centers for Disease Control and Prevention.
| true
| false
| false
|
acknowledgement
|
10.26434/chemrxiv-2021-dfx2w
|
doi10.26434/chemrxiv-2021-dfx2w
|
The authors acknowledge funding from ExxonMobil Research and Engineering. H.J.K. holds a Career Award at the Scientific Interface from the Burroughs Wellcome Fund and an AAAS Marion Milligan Mason Award, which supported this work.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.1801.00881
|
doi10.48550/arxiv.1801.00881
|
Acknowledgments This work is supported by the Beijing Municipal Science and Technology Commission (Grant No. Z161100000216144) and National Natural Science Foundation of China (Grant No. 61427811, 61573360). Special thanks to Dangwei Li and Yunfan Liu who support our experiments.
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| false
| false
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acknowledgement
|
10.1101/2022.08.26.505435
|
doi10.1101/2022.08.26.505435
|
The work described in this article was supported by the following funds: K22AI143963 (NL) and Development Funds from the University of Alabama at Birmingham (NL). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.1511.02207
|
doi10.48550/arxiv.1511.02207
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The author M. Dai was partially supported by NSF grant DMS-1517583.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.2301.13714
|
doi10.48550/arxiv.2301.13714
|
We thank Chris Lucas for his contributions to this project when it was still in an early stage, Kenny Smith for his comments on the first draft of this paper, and Matthias Lindemann for excellent suggestions for the camera-ready version. VD is supported by the UKRI Centre for Doctoral Training in Natural Language Processing, funded by the UKRI (grant EP/S022481/1) and the University of Edinburgh, School of Informatics and School of Philosophy, Psychology & Language Sciences. IT acknowledges the support of the European Re- search Council (ERC StG BroadSem 678254) and the Dutch National Science Foundation (NWO Vidi 639.022.518).
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acknowledgement
|
10.48550/arxiv.2106.05190
|
doi10.48550/arxiv.2106.05190
|
We want to thank the University of Science, Vietnam National University in Ho Chi Minh City, and AISIA Research Lab in Vietnam for supporting us throughout this paper. This research is funded by Vietnam National University Ho Chi Minh City (VNU-HCM) under grant number C2021-18-03.
| true
| false
| false
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acknowledgement
|
10.1101/2023.01.02.522472
|
doi10.1101/2023.01.02.522472
|
The study was funded by grants from the Danish Cancer Society (grant R204-A12359) and the Novo Nordisk Foundation (#NNF19OC0058262 to AS and SFP), the Carlsberg foundation (#CF19-0505 to AS and #CF20-0491 to SFP), and the Danish Council For Independent Research (#0134-00218B to SFP and DC). RI and JY were supported by the European Union (H2020-s MSCA-ITN-2018, grant #813834, to AS and SFP.
| true
| false
| false
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acknowledgement
|
10.48550/arxiv.2212.13525
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doi10.48550/arxiv.2212.13525
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This project is supported by MOST under code MOST 110-2221-E-A49-144-MY3. Eugene Lee is partially supported by Novatek Ph.D. Fellowship Award. The authors are grate- ful for the suggestions provided by Dr. Eugene Wong from University of California in Berkeley and Dr. Jian-Ming Ho from Academia Sinica of Taiwan.
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| false
| false
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acknowledgement
|
10.1101/2023.10.19.562943
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doi10.1101/2023.10.19.562943
|
We thank Steffi Gold for help in EM preparations and Markus Ganter for comments on the manuscript. We thank Katharina Röver for her help in parasitemia determination and performing genotyping PCRs. We thank Miriam Reinig and all students helping with the mosquito rearing. This project was funded by grants from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation): SPP 2225 "Exit pathways of intracellular pathogens" (FR2140/12-1), and DFG FR2140/10-1. MS received a visiting fellowship from the Carl Duisberg foundation. AB is a member of the Heidelberg Biosciences International Graduate School (HBIGS). LH is a member of the Molecular Biotechnology Master program, LPD is a member of the Heidelberg Biosciences Infectious Disease Master Program, MA was a member of the Heidelberg Bioscience Molecular and Cellular Biology Master Program. We acknowledge the microscopy support from the Infectious Diseases Imaging Platform (IDIP) at the Center for Integrative Infectious Disease Research and are grateful for the generous use of the microscopes at the Electron Microscopy Core Facility (EMCF) of Heidelberg University. The Plasmodium database PlasmoDB facilitated this work.
| true
| true
| false
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acknowledgement
|
10.1364/opticaopen.24718050.v1
|
doi10.1364/opticaopen.24718050.v1
|
Funding. Fonds De La Recherche Scientifique - FNRS; Horizon 2020 Framework Programme (801505); Ministerio de Ciencia e Innovación (PID2021-122711NB-C21). | Acknowledgments. S.W.J. has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 801505. This work has been partially supported by the Spanish Ministry of Science and Innovation, Gobierno de España, under Contract No. PID2021-122711NB-C21.
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| false
| false
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acknowledgement
|
10.21203/rs.3.rs-1065059/v1
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doi10.21203/rs.3.rs-1065059/v1
|
This work was supported by the U.S. National Library of Medicine [grant number: T15LM012502]. The Cancer Prevention, Survivorship and Prevention ECHO, a program of the IUPUI ECHO Center at the Indiana University Richard M. Fairbanks School of Public Health, described in this study received funding from Indiana Cancer Consortium, and in-kind support from the Indiana Department of Health, specifically the Division of Chronic Disease, Primary Care, Rural Health, the Indiana Immunization Coalition, Riley Children’s Hospital, American Cancer Society, and the Indiana Clinical and Translational Sciences Institute. The authors wish to thank all the study participants who dedicated their time and efforts during the pandemic to this project. Your feedback is an inspiration. We also want to thank the Cancer ECHO hub team members, IUPUI ECHO Center, Harold Kooreman, Dr. John Agley, and the researchers who are evaluating the other IUPUI ECHO programs that generously gave of their insights.
| true
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| false
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acknowledgement
|
10.21203/rs.3.rs-1719811/v1
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doi10.21203/rs.3.rs-1719811/v1
|
Research for this publication was funded by National Cancer Institute (Argentina) - Asistencia Financiera a Proyectos de Investigación en Cáncer de Origen Nacional IV. | The study was funded by the by National Cancer Institute (Argentina) - Asistencia Financiera a Proyectos de Investigación en Cáncer de Origen Nacional IV.
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acknowledgement
|
10.48550/arxiv.2302.06142
|
doi10.48550/arxiv.2302.06142
|
This work was supported in part by funding from the Food Agility Co-operative Research Centre (CRC), funded under the Australian Commonwealth Government Co-operative Research Centre program, and in part by Charles Sturt University, AgriFutures Australia and Ricegrowers Ltd. One of us (AC) would like to acknowledge the receipt of a postgraduate research scholarship from Food Agility CRC.
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| false
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acknowledgement
|
10.1101/2020.11.13.380972
|
doi10.1101/2020.11.13.380972
|
- Acknowledgements: This study was supported by the Norwegian ExtraFoundation for Health and Rehabilitation (2015/FO5146), the Research Council of Norway (249795, 262372), the South□Eastern Norway Regional Health Authority (2014097, 2015044, 2015073, 2018037), the European Research Council under the European Union's Horizon 2020 research and Innovation program (ERC StG Grant 802998), and the Department of Psychology, University of Oslo.
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acknowledgement
|
10.1101/2023.03.30.534737
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doi10.1101/2023.03.30.534737
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This research was supported by funding from the National Institutes of Health R01HL142788 to M.T. and C.L., and R01HL16398 to M.T. In addition, support from the University of Pittsburgh Center for Research Computing, RRID:SCR_022735, and for the HTC cluster, which is supported by NIH award number S10OD028483. Genomics resources was provided through the University of Pittsburgh HSCRF Genomics Research Core, RRID: SCR_018301, for the RNA-seq experiments.
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acknowledgement
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10.48550/arxiv.2004.14718
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doi10.48550/arxiv.2004.14718
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This work was supported by JST ERATO Grant Number JPMJER1903 and JSPS KAKENHI Grant Number JP18K11155.
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dataset
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10.34133_2022_9870149
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doi10.34133_2022_9870149
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Code Availability. The source codes for our CS framework are available at https://github.com/bianzhiyu/ContinuityScaling.
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| true
| true
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dataset
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10.1088_1361-6501_ad180c
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doi10.1088_1361-6501_ad180c
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Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.
| false
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dataset
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10.1038_s41467-022-30406-4
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doi10.1038_s41467-022-30406-4
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Data availability The cryo-EM particle stacks, maps and models generated in this study have been deposited in EMPIAR image archive, EMDB database and the Protein Data Bank, respectively, under accession codes EMPIAR-10969, EMD-25757 and PDB-7T9G) for VcINDY-Na+ (300 mM) structure and under accession codes EMPIAR-10970, EMD-25756 and PDB-7T9F) for VcINDY-Ch+ structure. Source Data for Fig. 4 are available with the paper.
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dataset
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10.1088_1361-6595_ad03bd
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doi10.1088_1361-6595_ad03bd
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Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.
| false
| true
| false
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dataset
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10.1265_ehpm.22-00245
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doi10.1265_ehpm.22-00245
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Availability of data and material The datasets generated and/or analyzed during the current study are not publicly available because the study involves human participants with a nondisclosure provision of individual data stated in the written informed consent in order to prevent compromise of study participants’ privacy but are available from the corresponding author upon reasonable request.
| false
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| false
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dataset
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10.1088_1402-4896_ad0bb9
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doi10.1088_1402-4896_ad0bb9
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Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.
| false
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| false
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dataset
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10.1016_j.isci.2020.100959
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doi10.1016_j.isci.2020.100959
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DATA AND CODE AVAILABILITY RNA-seq data have been deposited in NCBI’s Gene Expression Omnibus (GEO). The accession number for the RNA-seq data reported in this paper is GEO: GSE145495.
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dataset
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10.7554_elife.85878
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doi10.7554_elife.85878
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Data availabilityAll data generated or analyzed in this study are included in the manuscript and supporting files. Source data files have been provided for Figure 1b, Figure 1c, Figure 1f, Figure 1g, Figure 1-figure supplement 2a-c, Figure 2b, Figure 2g, Figure 2-figure supplement 1a-f, Figure 3a, Figure 3c, Figure 3e, Figure 3h, Figure 3 supplement 1b-c, Figure 4a, Figure 4b, Figure 4e, Figure 4f, Figure 4h, Figure 4i, Figure 4-figure supplement 1a-b, Figure 4-figure supplement 2a, Figure 5b.
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dataset
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10.1371_journal.pntd.0009424
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doi10.1371_journal.pntd.0009424
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Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.
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| true
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dataset
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10.7554_elife.85521
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doi10.7554_elife.85521
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Data availability Figure 3—source data 1, Figure 5—source data 1, Figure 6—source data 1, and Figure 7—source data 1 contain the numerical and statistical data used to generate the figures. The confocal imaging dataset is available at Brain Image Library under DOI https://doi.org/10.35077/g.933.
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dataset
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10.1371_journal.pone.0258085
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doi10.1371_journal.pone.0258085
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Data Availability Statement Due to legal and participants confidentiality, data will only be available upon request. The data underlying the results presented in the study are available from Shenzhen Luohu Disease Prevention and Control Center via contacting Weihong Chen, director of Shenzhen Luohu Disease Prevention and Control Center, at 1433529760@qq.com.
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dataset
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10.1371_journal.ppat.1011871
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doi10.1371_journal.ppat.1011871
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Data Availability Statement: Raw and processed RNA-sequencing data can be accessed from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database under accession number GSE212205.
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dataset
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10.1371_journal.pcbi.1011196
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doi10.1371_journal.pcbi.1011196
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Data Availability Statement Data can be found in the following doi: https://doi.org/10.6084/m9.figshare.21938651.v1.
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dataset
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10.1126_sciadv.adf9336
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doi10.1126_sciadv.adf9336
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Data and materials availability: All DNA constructs (table S2) and cell lines (table S3) are available from M.B.E. or through the Addgene repository under a material transfer agreement with California Institute of Technology. All data generated and all the computational and data analysis and modeling codes used in the current study are available at data.caltech.edu/records/0sdrn-73r13. All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials.
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dataset
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10.1088_1361-6579_ad0f70
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doi10.1088_1361-6579_ad0f70
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Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors.
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dataset
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10.1093_molbev_msad069
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doi10.1093_molbev_msad069
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Data availability No new data were generated in support of this research. TE models were deposited in the DFAM database.
| false
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| false
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dataset
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10.1088_2752-5295_acf4b5
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doi10.1088_2752-5295_acf4b5
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Data availability statementThe data that support the findings of this study are openly available in the Harvard Dataverse at https://doi.org/10.7910/DVN/2UT4GM (Hauer 2023).
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dataset
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10.1371_journal.pbio.3000080
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doi10.1371_journal.pbio.3000080
|
Data Availability Statement The data for individual figures are available as Excel files (labeled, e.g., S1 Data) with links in the relevant figure captions. The full listing of these data files can be found following the captions for supplementary figures, as well as in the Excel file DataFileListings.xlsx. In addition, the full data are available. The corresponding author (Aniruddha Das) will maintain the data at Columbia University until publication. Once published, all datasets will be shared openly with qualified scientists. Access will be granted by request to the corresponding author. It will be our intent to collaborate with individuals who contact us about sharing the data. But if that is not possible or does not make sense, then we will simply provide the data to them. Because of the large size of the optical imaging and electrode recording data, it might not be possible to keep it online. Hence, it will also be distributed (upon request) as a DVD box set for a nominal fee (sufficient to cover the costs of the DVDs, the time for a lab technician to burn the discs, and shipping expenses).
| false
| true
| true
|
dataset
|
10.1088_2632-2153_ad0e17
|
doi10.1088_2632-2153_ad0e17
|
Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).
| false
| true
| false
|
dataset
|
10.1186_s12875-019-0972-1
|
doi10.1186_s12875-019-0972-1
|
Availability of data and materials Table 1 provides a list of the 26 included papers and Additional file 1 shows the database search strategy.
| false
| true
| false
|
dataset
|
10.1186_s13059-023-02963-4
|
doi10.1186_s13059-023-02963-4
|
Availability of data and materials The results published here are in part based upon data generated by the TCGA Research Network (https://www.cancer.gov/tcga), METABRIC (https://ega-archive.org/studies/EGAS00000000083), MSK-IMPACT (https://www.mskcc.org/msk-impact) or deposited at cBioPortal (https://www.cbioportal.org/). The following expression datasets from the Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/) have also been employed: GSE114012 [48], GSE131594 [45], GSE137912 [12], GSE152699 [49], GSE75367 [47], GSE83142 [46], GSE93991 [44], GSE134836 [13], GSE134838 [13], GSE134839 [13], GSE124854 [93], GSE135215 [94], GSE99116 [93], GSE178839 [149], GSE149224 [100], GSE139944 [102], GSE191127 [150], GSE109211 [151], GSE50509 [152], GSE65185 [153], GSE66399 [154], GSE68871 [155] and GSE99898 [156]. The GEO datasets employed in the analyses are summarised in Additional file 1: Tables S2 and S3. All codes developed for the purpose of this study can be found at the following repository, released under a GNU General Public License v3.0 at github: https://github.com/secrierlab/CancerG0Arrest [157] and Zenodo (doi: 10.5281/zenodo.7840672) [158].
| true
| true
| true
|
dataset
|
10.1371_journal.pone.0261071
|
doi10.1371_journal.pone.0261071
|
Data Availability Statement Data are available from the Zenodo database (DOI: 10.5281/zenodo.5774499).
| true
| true
| false
|
dataset
|
10.1186_s12866-023-02901-1
|
doi10.1186_s12866-023-02901-1
|
Data AvailabilityRaw sequences from this study are available and were deposited in the European Nucleotide Archive (ENA) with bio project accession PRJEB56537 in the ENA bio project database: https://www.ebi.ac.uk/ena/browser/view/PRJEB56537.
| true
| true
| true
|
dataset
|
10.1371_journal.pone.0244053
|
doi10.1371_journal.pone.0244053
|
Data Availability Statement The data are accessible via Dataverse (https://doi.org/10.7910/DVN/8ZVOKW).
| false
| true
| false
|
dataset
|
10.1371_journal.pone.0250044
|
doi10.1371_journal.pone.0250044
|
Data Availability Statement Data are available here: Wall, Kristin, 2021, "Replication Data for: "Etiologies of genital inflammation and ulceration in symptomatic Rwandan men and women responding to radio promotions of free screening and treatment services"", https://doi.org/10.7910/DVN/CFX6UU, Harvard Dataverse.
| false
| true
| false
|
dataset
|
10.1126_sciadv.abn5709
|
doi10.1126_sciadv.abn5709
|
Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Code for analyzing mechano-NPS data is archived at Zenodo (https://doi.org/10.5281/zenodo.7884859). Requests for strain CA846 can be submitted through the Caenorhabditis Genetics Center at https://cgc.umn.edu/strain/WH257. Strain CA1728 [mjl-1(tm1651)] can be requested from the National Bioresource Project (https://shigen.nig.ac.jp/c.elegans/). Requests for strains generated in this study should be submitted to C.L. or A.F.D.
| true
| true
| true
|
dataset
|
10.1126_sciadv.ade1817
|
doi10.1126_sciadv.ade1817
|
Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. All transcriptome data are available at the Gene Expression Omnibus (GEO) repository under the accession number GSE198939. Raw data from all experiments are available at zenodo.org under the following DOI: 10.5281/zenodo.7654968. All strains are available at CGC under https://cgc.umn.edu/.
| true
| true
| true
|
dataset
|
10.1073_pnas.2301985120
|
doi10.1073_pnas.2301985120
|
Data, Materials, and Software Availability Cryo-EM density maps of the KCNQ1 channel with the voltage sensor in the up, intermediate, and down conformation have been deposited in the electron microscopy data bank under accession codes EMD-40508 (70), EMD-40509 (71), and EMD-40510 (72), respectively. Atomic coordinates of the KCNQ1 channel with the voltage sensor in the up, intermediate, and down conformation have been deposited in the protein data bank under accession codes 8SIK (73), 8SIM (74), and 8SIN (75), respectively.
| false
| true
| true
|
dataset
|
10.1002_advs.202200181
|
doi10.1002_advs.202200181
|
Data Availability Statement The data that support the findings of this study are available from the cor- responding authors upon reasonable request.
| true
| true
| false
|
dataset
|
10.1371_journal.pone.0257328
|
doi10.1371_journal.pone.0257328
|
Data Availability Statement LANYERO, HINDUM (2021), Validity of caregivers’ reports on prior use of antibacterials in children under five years presenting to health facilities in Gulu, northern Uganda, Dryad, Dataset, https://doi.org/10.5061/dryad.sj3tx9642.
| false
| true
| false
|
dataset
|
10.3389_fpsyt.2022.1086038
|
doi10.3389_fpsyt.2022.1086038
|
Data availability statement The datasets presented in this article are not readily available because ethics approval did not include public data sharing. Requests to access the datasets should be directed to the corresponding author.
| false
| true
| false
|
dataset
|
10
|
doi10
|
Data Availability Statement: The code and data underlying this article will be shared on reasonable request to the corresponding author.
| false
| true
| true
|
dataset
|
10.1371_journal.ppat.1010103
|
doi10.1371_journal.ppat.1010103
|
Data Availability Statement The RNA-seq datasets generated during this study are available at Bioproject accession number PRJNA742496 in the NCBI Bioproject database (http://www.ncbi.nlm.nih.gov/bioproject/742496).
| false
| true
| false
|
dataset
|
10.1186_s12874-023-01902-y
|
doi10.1186_s12874-023-01902-y
|
Data AvailabilityWe provide R modules as the basis for the dashboard development on GitHub (https://github.com/CTU-Basel/viewTrial). Qualitative data that supported the development of the risk assessment and study dashboard is provided in the supplementary material.
| true
| true
| true
|
dataset
|
10.1093_nar_gkad331
|
doi10.1093_nar_gkad331
|
DATA AVAILABILITY The online resource is available without restriction at https://www.flyrnai.org/tools/pangea/.
| false
| true
| false
|
dataset
|
10.1371_journal.pbio.3002453
|
doi10.1371_journal.pbio.3002453
|
Data Availability Statement: All data supporting the findings of this manuscript are available on the Open Science Framework at osf.io/3kyvw.
| false
| true
| true
|
dataset
|
10.1186_s12874-019-0884-8
|
doi10.1186_s12874-019-0884-8
|
Availability of data and materials Restrictions by the data custodians mean that the datasets are not publicly available or able to be provided by the authors. Researchers wanting to access the datasets used in this study should refer to the Centre for Health Record Linkage application process (www.cherel.org.au/apply-for-linked-data).
| false
| true
| false
|
dataset
|
10.1371_journal.pone.0229895
|
doi10.1371_journal.pone.0229895
|
Data Availability Statement All relevant data are within the manuscript.
| false
| true
| false
|
dataset
|
10.1088_1361-6579_ad0426
|
doi10.1088_1361-6579_ad0426
|
Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.
| false
| true
| false
|
dataset
|
10.1007_s00122-023-04372-4
|
doi10.1007_s00122-023-04372-4
|
Data availabilityElectronic supplementary material The online version of this article (https://doi.org/xxxxx) contains supplementary material, which is available to authorized users.
| true
| true
| false
|
dataset
|
10.1371_journal.pone.0227230
|
doi10.1371_journal.pone.0227230
|
Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.
| false
| true
| true
|
dataset
|
10.1088_2634-4386_ad046d
|
doi10.1088_2634-4386_ad046d
|
Data availability statementThe data that support the findings of this study are openly available (Kaiser et al 2023). The experiment code is available on https://github.com/electronicvisions/model-paper-mc-sbi.
| false
| true
| true
|
dataset
|
10.3390_math10224246
|
doi10.3390_math10224246
|
Data Availability Statement: Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study.
| false
| true
| false
|
dataset
|
10.1186_s12889-023-16038-3
|
doi10.1186_s12889-023-16038-3
|
Availability of data and materials The datasets used and analyzed during this current study are available from the corresponding author on reasonable request.
| false
| true
| false
|
dataset
|
10.1371_journal.pone.0257370
|
doi10.1371_journal.pone.0257370
|
Data Availability Statement This study was registered in the Open Science Framework Registry (https://osf.io/rqve6). The review protocol can be accessed at https://bookdown.org/MathiasHarrer/Doing_Meta_Analysis_in_R/. Data are available from the Dryad Data Repository (https://datadryad.org/stash/dataset/doi:10.6078/D10T42).
| true
| true
| true
|
dataset
|
10.1098_rsos.220808
|
doi10.1098_rsos.220808
|
Data accessibility. This article has no additional data.
| false
| true
| false
|
dataset
|
10.1038_s41556-023-01184-y
|
doi10.1038_s41556-023-01184-y
|
Data availabilityAll data that support the findings of this study are available within the paper and its supplementary files. Sequencing data that support the findings of this study have been deposited in the Gene Expression Omnibus under accession code GSE208072. Previously published RNA-seq data from BCC, SCC and normal EpdSCs that were re-analysed here are available under accession code GSE152487. Source data are provided with this paper. All other data supporting the findings of this study are available from the corresponding author on reasonable request.Code availabilityAll bioinformatic analysis tools and pipelines used in this study are documented in the method section. Codes are available from the corresponding author upon reasonable request.
| false
| true
| true
|
dataset
|
10.1371_journal.pcbi.1011795
|
doi10.1371_journal.pcbi.1011795
|
Data Availability Statement: Computational code is available at https://github.com/kieran12lamb/SARS-CoV2_Mutational_Signatures GISAID data accessions are available at doi.org/10.55876/gis8.221201qs, doi.org/10.55876/gis8.230406qg and doi.org/10.55876/gis8.230406fb.
| false
| true
| true
|
dataset
|
10.1038_s41598-020-77562-5
|
doi10.1038_s41598-020-77562-5
|
Data availability All data generated and analyzed during the present study are available upon request from the corresponding author upon reasonable request.
| false
| true
| false
|
dataset
|
10.1073_pnas.2304611120
|
doi10.1073_pnas.2304611120
|
Data, Materials, and Software AvailabilityStructure factors and refined coordinates obtained from X-ray crystallography have been deposited into the Protein Data Bank (www.wwpdb.org) under PDB accession codes: 8SSP (72) (AurA-danusertib-Mb1), 8SSO (73) (AurA-danusertib-Mb2), and 8SSN (74) (Abl64–510-SKI-asciminib).
| true
| true
| true
|
dataset
|
10.3390_biom13060952
|
doi10.3390_biom13060952
|
Data Availability Statement The data supporting this study are available from the corresponding authors upon reasonable request.
| true
| true
| false
|
dataset
|
10.1177_03010066231175014
|
doi10.1177_03010066231175014
|
Data Availability: Data and scripts used to conduct this analysis can be viewed at Open Science Framework: Data and analysis for Effects of cortical distance on the Ebbinghaus and Delboeuf illusions. https://doi.org/10.17605/OSF.IO/GUHSF.
| true
| true
| true
|
dataset
|
10.1038_s42003-023-04955-3
|
doi10.1038_s42003-023-04955-3
|
Data availabilityThe main data supporting the results in this study are available within the paper and its Supplementary Information. Source data for all figures can be found in Supplementary Data 1. The raw and analysed datasets generated during the study are too large to be publicly shared, yet they are available for research purposes from the corresponding authors on reasonable request.
| true
| true
| false
|
dataset
|
10.1093_jncics_pkab068
|
doi10.1093_jncics_pkab068
|
Data Availability The data underlying this article cannot be shared publicly due to privacy restrictions of individuals that participated in the study. Aggregated, deidentified data may be shared on reasonable request to the corresponding author.
| false
| true
| false
|
dataset
|
10.1016/j.jbc.2022
|
doi10.1016/j.jbc.2022
|
Data availability Data available upon request. Contact anthony.koleske@yale. edu for more information. The limited proteolysis mass spectrometry data have been deposited to the ProteomeXchange Consortium via the PRIDE (46) partner repository with the dataset identifier PXD034393 (http://www.ebi.ac.uk/pride). The cross-linking raw mass spectrometry data and peak lists are available in the massIVE repository (https://massive.ucsd. edu) with accession number: MSV000089621 Annotated spectra supporting the cross-linked identifications are published on MS-Viewer (https://msviewer.ucsf.edu/ cgi-bin/msform.cgi?form=msviewer) with the following search keys: Trio SR6-GEF1-WT: l4abvtas5a
| false
| true
| true
|
dataset
|
10.1038_s41586-023-06415-8
|
doi10.1038_s41586-023-06415-8
|
Data availabilityDesign structures, AF2 models and experimental measurements are available at https://figshare.com/s/439fdd59488215753bc3. Cryo-EM maps and corresponding atomic models for the Influenza HA binder in Fig. 6d–h have been deposited in the PDB and the Electron Microscopy Data Bank under accession codes 8SK7 and EMDB-40557, respectively. Electron microscopy data collected for the HE0537 oligomer are available at EMDB-40602.Code availabilityCode for running RFdiffusion has been released on GitHub, free for academic, personal and commercial use at https://github.com/RosettaCommons/RFdiffusion. It is also available as a Google Colab notebook, accessible through GitHub.
| false
| true
| true
|
dataset
|
10.1088_1361-6501_ad0e9d
|
doi10.1088_1361-6501_ad0e9d
|
Data availability statementThe data cannot be made publicly available upon publication because the cost of preparing, depositing and hosting the data would be prohibitive within the terms of this research project. The data that support the findings of this study are available upon reasonable request from the authors.
| false
| true
| false
|
dataset
|
10.1371_journal.pone.0255730
|
doi10.1371_journal.pone.0255730
|
Data Availability Statement All relevant data are within the manuscript.
| false
| true
| false
|
dataset
|
10.1371_journal.pbio.3002512
|
doi10.1371_journal.pbio.3002512
|
Data Availability Statement: Codes and preprocessed data are available at https://osf.io/m7dta/. Note that raw SEEG and neuroimaging (T1-MPRAGE) data are protected and cannot be shared (CPP Sud-Est V, 2009-A00239-48).
| false
| true
| true
|
dataset
|
10.12688_f1000research.16224.3
|
doi10.12688_f1000research.16224.3
|
Data availability Pediococcus acidilactici strain DS32 16S ribosomal RNA gene, partial sequence, obtained during this study. GenBank accession number MH938236: http://identifiers.org/ncbigi/GI:1481059229.
| false
| true
| false
|
dataset
|
10.1038_s41598-022-24860-9
|
doi10.1038_s41598-022-24860-9
|
Data availability All data presented here can be found online in Supplementary Information 1 (includes Methods S1–S6; Fig- ures S1–S3; Tables S1–S5), and Supplementary Data S1.
| false
| true
| false
|
dataset
|
10.1371_journal.pone.0279220
|
doi10.1371_journal.pone.0279220
|
Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. All files are available from thefigshare database (10.6084/m9.figshare.22578787 10.6084/m9.figshare.22578808).
| false
| true
| true
|
dataset
|
10.1016_j.jrurstud.2023.01.003
|
doi10.1016_j.jrurstud.2023.01.003
|
Data availabilityData will be made available on request.
| false
| true
| false
|
dataset
|
10.1088_1402-4896_ad07c3
|
doi10.1088_1402-4896_ad07c3
|
Data availability statementThe data cannot be made publicly available upon publication because they contain sensitive personal information. The data that support the findings of this study are available upon reasonable request from the authors.
| false
| true
| false
|
dataset
|
10.3390_ijms241210388
|
doi10.3390_ijms241210388
|
Data Availability StatementNot applicable.
| false
| true
| false
|
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