dataesr/paragraph_classification_eval · Datasets at Hugging Face

dataset_key stringclasses 2 values	doi stringlengths 2 39	id stringlengths 5 42	text stringlengths 26 7.49k	is_acknowledgement bool 2 classes	is_dataset bool 2 classes	is_software bool 2 classes
dataset	10.1101_gad.343038.120	doi10.1101_gad.343038.120	Data and software availability Publicly available, published data sets can be accessed on the fol- lowing GEO accession numbers: single-cell RNA-seq data sets GSE133747 and GSE128033 and published bulk RNA-seq of tis- sue-resident macrophage populations GSE63340. Sequencing data sets performed in this study are available at the NCBI GEO under accession number GSE151015.	false	true	true
dataset	10.1088_1361-6560_ad07f5	doi10.1088_1361-6560_ad07f5	Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).	false	true	false
dataset	10.1186_s12866-023-02910-0	doi10.1186_s12866-023-02910-0	Availability of data and materialsAll data and materials are available for this work and can be accessed from the corresponding author.	true	true	false
dataset	10.1088_1402-4896_ad1088	doi10.1088_1402-4896_ad1088	Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).	false	true	false
dataset	10.1371_journal.pone.0239135	doi10.1371_journal.pone.0239135	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1371_journal.pgen.1008593	doi10.1371_journal.pgen.1008593	Data Availability Statement EPSPS sequencing data (MK421977-MK422097), NextRAD sequencing data Genbank: PRJNA515629) genome assembly (Genbank: VALG00000000) and Exome resequencing data (Genbank: PRJNA515629) are available in GenBank.	false	true	false
dataset	10.1371_journal.pclm.0000243	doi10.1371_journal.pclm.0000243	Data Availability Statement: Survey data available via the Open Science Framework repository. The relevant DOI is: DOI 10.17605/OSF.IO/7QR8C.	false	true	false
dataset	10.1073_pnas.2220537120	doi10.1073_pnas.2220537120	Data, Materials, and Software AvailabilityGitHub hosts the FPalyze (60) and SMBalyze (61) R packages. The custom scripts referenced in these methods are available on GitHub (62). For the SM experiments, raw movie files and SMBalyze output files have been uploaded to Zenodo (63), with an embargo that expires in October 2023. Our pMALcPP vector and pMALcPP/MS2-CP plasmids will be deposited to Addgene. All study data are included in the article and/or SI Appendix.	true	true	true
dataset	10.1371_journal.pone.0284692	doi10.1371_journal.pone.0284692	Data Availability Statement The third party financial data files are available from the China Economic and Financial Research Database (CSMAR) (https://www.gtarsc.com) and Wind database (https://www.wind.com.cn). The authors confirm that others would be able to access or request these data in the same manner as the authors. The authors also confirm that they did not have any special access or request privileges that others would not have.	true	true	false
dataset	10.1371_journal.ppat.1012064	doi10.1371_journal.ppat.1012064	Data Availability Statement: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting information files.	false	true	false
dataset	10.1038_s41598-023-34648-0	doi10.1038_s41598-023-34648-0	Data availabilityAll data and materials have been made publicly available at the National Center for Health Statistics website (https://www.cdc.gov/nchs/nhanes/index.htm).	true	true	false
dataset	10.1016_j.chom.2023.05.025	doi10.1016_j.chom.2023.05.025	Data and code availabilityAll data are available via links in the Method details section and key resources table. See https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera for results files. The raw sequencing data for this study can be found in the NCBI Sequence Read Archive under BioProject number PRJNA947170.All code are at https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera and via the links in the key resources table.	false	true	true
dataset	10.1038_s43247-022-00597-1	doi10.1038_s43247-022-00597-1	Data availability The data for Fig. 1 is available via figshare (https://doi.org/10.6084/m9.figshare. 21183709) and data associated with Fig. 3 is available from BCO-DMO (https://www. bco-dmo.org/dataset/740051).	false	true	false
dataset	10.1371_journal.pone.0270038	doi10.1371_journal.pone.0270038	Data Availability Statement All relevant data are within the paper and its Supporting information files.	false	true	false
dataset	10.1371_journal.pone.0240987	doi10.1371_journal.pone.0240987	Data Availability Statement Readers can access the dataset by registering an account with the Korean CDC website (https://knhanes.cdc.go.kr/knhanes/index.do). There is a blue bar on the top of the website. Click the third menu, written in Korean, “원시자료” (The content about the raw data) on the blue bar. There is a second submenu below the blue bar, written in Korean “원시자료 다운로드 (Download the raw data)”. Once readers click this, an e-mail address for log-in is required. Once logged in, readers can download the raw data from 1998-2016 Korea National Health and Nutrition Examination Survey database using SAS or SPSS. The authors do not have any special access privileges to the data. For other data related inquiries, please contact the corresponding author.	false	true	true
dataset	10.7554/elife	doi10.7554/elife	Data availability All data generated or analysed during this study are included in the manuscript and supporting files. Source data files have been provided in Source Data 1.	false	true	true
dataset	10.1371_journal.pone.0285211	doi10.1371_journal.pone.0285211	Data Availability Statement All of the source code of this paper is publicly available at https://github.com/Vang-z/HGJO.	false	true	true
dataset	10.1186_s12870-023-04281-0	doi10.1186_s12870-023-04281-0	Availability of data and materials The datasets generated and/or analyzed during the current study are available in the NCBI repository as PRJNA878550 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878550, frozen root ATAC-seq) and PRJNA878551 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878551, fresh root ATAC-seq). The INTACT vectors and lines generated during the current study will be available from ADDGENE and from the corresponding author on request. Both the root and leaf ATAC-Seq data can be accessed through the GrainGenes Genome Browsers by selecting the CS reference genome RefSeq v1.0 (https://wheat.pw.usda.gov/GG3/genome_browser).	false	true	true
dataset	10.1073_pnas.2302191120	doi10.1073_pnas.2302191120	Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix.	true	true	true
dataset	10.1038_s41422-023-00802-6	doi10.1038_s41422-023-00802-6	Data availabilityThe scRNA-seq and spatial transcriptome data reported in this paper have been deposited in the OMIX, China National Center for Bioinformation/Beijing Institute of Genomics, Chinese Academy of Sciences (https://ngdc.cncb.ac.cn/omix: accession number OMIX003147). The raw data reported in this study can be requested from the corresponding author (chen_jiekai@gibh.ac.cn).	true	true	false
dataset	10.1002_hbm.25102	doi10.1002_hbm.25102	DATA AVAILABILITY STATEMENTThe data that support the findings of this study are available from the corresponding author upon reasonable request.	false	true	false
dataset	10.1371_journal.pone.0284383	doi10.1371_journal.pone.0284383	Data Availability Statement All relevant data are within the manuscript and its Supporting information files.	false	true	true
dataset	10.1111_pbi.13168	doi10.1111_pbi.13168	Data availability The target deep sequencing and WGS data have been submitted to the NCBI Sequence Read Archive (SRA) BioProject ID: PRJNA380842.	false	true	false
dataset	10.1371_journal.ppat.1009441	doi10.1371_journal.ppat.1009441	Data Availability Statement: Raw RNAseq data have been deposited at the National Center for Biotechnology Information (NCBI) Sequence Read Archive as Bioproject number PRJNA593260. All other data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1101_gr.277334.122	doi10.1101_gr.277334.122	Data access All raw and processed sequencing data generated in this study have been submitted to the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/) under accession number PRJEB54100. The DeepVariant callsets for selected samples (HG02486, HG02572, HG02622, HG02886, HG03516, HG03540, HG03579) and FASTA sequences from selected low-complexity regions (n = 27) are available at Zenodo (https://doi.org/10.5281/zenodo.7392259) or at the IGSR FTP site (http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC2/working/publications/202212_Porubsky_GenomeResearch). All custom scripts are available in the Supplemental Code and at Zenodo (https://doi.org/10.5281/zenodo.7392259).	false	true	true
dataset	10.1088_2515-7620_acf02d	doi10.1088_2515-7620_acf02d	Data availability statementSimulated datasets are available to be requested from the corresponding author. The observational data can be retrieved from the National Meteorology Agency of Ethiopia for the Wolaita Sodo station. WRF code can be obtained from WRF website freely.	false	true	true
dataset	10.1038_s41586-023-05989-7	doi10.1038_s41586-023-05989-7	Data availabilityThe 16S rRNA and metagenomics sequencing reads are available on NCBI under BioProject PRJNA822660. The mass spectrometry proteomics datasets are available through the ProteomeXchange Consortium in the PRIDE79 partner repository with dataset identifier PXD038906. The targeted and non-targeted bile acid metabolomics datasets are available on Metabolomics Workbench under project numbers ST002073 and ST002075. The minimum datasets necessary for reproduction of figures or extended research related to this article are available on GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.Code availabilityCustom code for the generation of figures and statistical calculations in this manuscript is available on Zenodo at 10.5281/zenodo.7683655 (ref. 80) and GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.	false	true	true
dataset	10.1038_s41598-022-27193-9	doi10.1038_s41598-022-27193-9	Data availability The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.	false	true	false
dataset	10.1371_journal.pone.0232695	doi10.1371_journal.pone.0232695	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1371_journal.pgen.1009334	doi10.1371_journal.pgen.1009334	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1371_journal.pwat.0000075	doi10.1371_journal.pwat.0000075	Data Availability Statement To ensure confidentiality of participants’ information as agreed up on during Ethical approval and Consent Process, qualitative interview transcripts’ file is only visible to the direct research team or through Mbarara University of Science and Technology Research Ethics Committee, P.O. Box 1410 Mbarara, Tel: +256-48-543-3795, Fax: +256-48-542-0782, E-mail: irc@must.ac.ug, mustirb@gmail.com since they are not publically available.	false	true	false
dataset	10.1186_s13059-021-02387-y	doi10.1186_s13059-021-02387-y	Availability of data and materialsAll data newly generated in this study is disclosed in the published manuscript. The plasmids used for local production of LAMP enzymes have been deposited on Addgene (#170277, 170278, 170279).	false	true	false
dataset	10.1371_journal.pone.0262792	doi10.1371_journal.pone.0262792	Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.3390_biom12081122	doi10.3390_biom12081122	Data Availability Statement: NMR data and pulse sequences are available at https://comdnmr. nysbc.org/comd-nmr-dissem, (accessed on 27 June 2022).	false	true	false
dataset	10.1073/pnas	doi10.1073/pnas	Materials and Data Availability. Requests for reagents and code should be directed to the corresponding author. RPPA data are available on Figshare at (https://figshare.com/articles/RPPA_data/12199835/1).	true	true	true
dataset	10.1371_journal.pone.0243633	doi10.1371_journal.pone.0243633	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1038_s41467-022-29612-x	doi10.1038_s41467-022-29612-x	Data availability The data that support the findings of this study are available from the corresponding author (Y.O.) upon reasonable request.	false	true	false
dataset	10.1371_journal.pone.0244089	doi10.1371_journal.pone.0244089	Data Availability Statement All relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1371_journal.pone.0262642	doi10.1371_journal.pone.0262642	Data Availability Statement All relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1371_journal.pone.0232245	doi10.1371_journal.pone.0232245	Data Availability Statement Full details on the methods and the clinical studies included in the network meta-analysis that informed the economic analysis are provided in Mavranezouli et al., Psychol Med. 2020 Mar;50(4):542-555. doi: 10.1017/S0033291720000070. All other relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1038_s41598-019-49459-5	doi10.1038_s41598-019-49459-5	Data Availability All data analyzed during this study is included in Supplementary Information files.	false	true	false
dataset	10.3390_ijerph20031722	doi10.3390_ijerph20031722	Data Availability Statement: The raw data and coding framework used in this study can be accessed on request from the corresponding author.	false	true	false
dataset	10	doi10	Data availability The Whole Exome Sequencing and RNA-seq data that support the findings of this study have been deposited in dbGAP with accession code # phs002482.v1.p1. All relevant data supporting the findings of this study are available in the manuscript and its supplementary information file and source data file. Source data are provided with this paper.	false	true	true
dataset	10.1371_journal.pone.0301029	doi10.1371_journal.pone.0301029	Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1088_1748-9326_acffde	doi10.1088_1748-9326_acffde	Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.	false	true	false
dataset	10.1371_journal.pclm.0000362	doi10.1371_journal.pclm.0000362	Data Availability Statement: The cancer incidence, NDVI, precipitation, temperature, solar radiation, ozone concentration, population density, and other covariates are available online: CI5PLUS: CANCER INCIDENCE IN FIVE CONTINENTS TIME TRENDS: https://ci5.iarc.fr/CI5plus/Pages/download.aspx; The Surveillance, Epidemiology, and End Results (SEER) Program: https://seer.cancer.gov/data/; USGS Landsat 5 TM Collection 2 Tier 1 TOA Reflectance, USGS Landsat 7 Collection 2 Tier 1 TOA Reflectance: https://www.usgs.gov/landsat-missions/landsat-data-access; ERA5-Land Daily Aggregated - ECMWF Climate Reanalysis: https://cds.climate.copernicus.eu/cdsapp#!/search?type=dataset; TOMS and OMI Merged Ozone Data: https://developers.google.com/earth-engine/datasets/catalog/TOMS_MERGED; GHS-POP R2023A - GHS population grid multitemporal (1975-2030): https://data.jrc.ec.europa.eu/dataset/2ff68a52-5b5b-4a22-8f40-c41da8332cfe; Global/Regional estimates (V5.GL.03) of surface PM2.5: https://sites.wustl.edu/acag/datasets/surface-pm2-5/; CEIC: Global Economic Data, Indicators, Charts & Forecasts https://www.ceicdata.com/en/products; Global Burden of Disease Study 2019 (GBD 2019) Smoking Tobacco Use Prevalence 1990-2019: https://ghdx.healthdata.org/record/ihme-data/gbd-2019-smoking-tobacco-use-prevalence-1990-2019; Code availability: https://github.com/johnjiresearchlab/ClimateChangeCancer.	false	true	true
dataset	10.1371_journal.pdig.0000447	doi10.1371_journal.pdig.0000447	Data Availability Statement: The human RNA raw sequencing data in this study requires deposit into the Database of Genotypes and Phenotypes (dbGAP) of the National Center for Biotechnology Information (United States National Library of Medicine) with controlled access. The data will be available through dbGaP (https://www.ncbi.nlm.nih.gov/gap/) under accession number: phs003112.v1.p1. The public RNA data used for validation in this study is available in the GEO database under accession number GSE142530 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142530). Proteomic data can be found in the MassIVE repository under accession number MSV000089168.	false	true	true
dataset	10.1038_s41586-023-06322-y	doi10.1038_s41586-023-06322-y	Data availabilityThe data supporting the findings of this study are available within the paper and its Supplementary Information files. Sequences for all the sgRNAs used in this study are provided in Supplementary Table 1. Genome-wide CRISPR screening data are provided in Supplementary Tables 2 and 3. RNA-seq data are provided in Supplementary Tables 4 and 5. The raw RNA-seq data have been deposited and made publicly available in the NCBI Gene Expression Omnibus with accession number GSE233548. Full versions of all blots are provided in Supplementary Fig. 1. The gating strategies of flow cytometry are provided in Supplementary Fig. 2. Gene expression data derived from nasopharyngeal swab samples is publicly available in dbGaP (https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?login=&page=login) with accession no. phs002433.v1.p1. The human genome reference (hg38) used in the RNA-seq analysis is available in the NCBI genome assembly with accession number GCF_000001405.39. The protein expression profiles are available in the web-based Human Protein Atlas database (https://www.proteinatlas.org/). The transcriptional-factor binding profiles are available in the web-based JASPAR database (https://jaspar.genereg.net/). The materials, reagents and other experimental data are available from the corresponding author upon request. Source data are provided with this paper.Code availabilityThe source code used for calculating membrane bending rigidity has been deposited in Zenodo (10.5281/zenodo.7948870). The publicly available code used for MDS is referenced in the Methods.	false	true	true
dataset	10.1371_journal.pone.0222343	doi10.1371_journal.pone.0222343	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1038_s41598-023-32045-1	doi10.1038_s41598-023-32045-1	Data availabilityAll the data are available online in Replication data to Prostaglandin synthases and pro-inflammatory cytokine gene expression dynamics in bovine endometrial cells exposed to cow blood plasma small extracellular vesicles (sEV) reflect the fertility breeding value—Harvard Dataverse79.	false	true	false
dataset	10	doi10	Data Availability Statement This manuscript has no associated data or the data will not be deposited. [Authors’ comment: The datasets generated during and/or analysed during the current study are available in the repository ‘Supplemental data for material radiopurity control in the XENONnT experiment’, https://zenodo.org/record/5767294.]	false	true	true
dataset	10.1371_journal.pone.0284934	doi10.1371_journal.pone.0284934	Data Availability Statement All relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1371_journal.pone.0262773	doi10.1371_journal.pone.0262773	Data Availability Statement The traction force microscopy code developed for this project is available at https://github.com/usschwarz/DirectMethod.	false	true	true
dataset	10.1016_j.molcel.2023.05.013	doi10.1016_j.molcel.2023.05.013	Data and code availabilityAll Illumina NGS and Oxford Nanopore Technologies (ONT) sequencing data generated from this publication have been deposited and are publicly available as of the date of publication. Accession numbers are listed in the key resources table.All original code for transposition junction NGS reads analysis has been deposited to GitHub and Zenodo. DOI are listed in the key resources table.	false	true	true
dataset	10.1371_journal.pclm.0000345	doi10.1371_journal.pclm.0000345	Data Availability Statement: The data that support the findings of this study are openly available via the ISIMIP data repository (https://data.isimip.org/). Summary results are included in the Supporting Information and detailed results for each site are available on the A.P.E.S. Wiki (wiki.iucnapesportal.org).	false	true	true
dataset	10.1111_csp2.348	doi10.1111_csp2.348	DATA AVAILABILITY STATEMENT No new data were generated for this perspectives article.	false	true	false
dataset	10.1371_journal.pone.0232176	doi10.1371_journal.pone.0232176	Data Availability Statement The data underlying the results presented in the study are available from the Medical Information Mart for Intensive Care (MIMIC-III), a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. Because the data contain sensitive patient information, MIMIC-III has not made the data sets publicly available. More information about MIMIC-III can be found on their website (https://mimic.mit.edu/about/mimic/). To access this data, interested researchers must first complete the CITI “Data or Specimens Only Research” course (https://www.citiprogram.org/index.cfm?pageID=154&icat=0&ac=0) and then submit an application for credentialed access through PhysioNet (https://physionet.org/content/mimiciii/). For more detailed instructions on how to apply for data access, please see the Supporting Information files of this article. This study used the publicly available Multiparameter Intelligent Monitoring in Intensive Care (MIMIC) III database version 1.4.	false	true	true
dataset	10.1088_1361-6641_ad0dac	doi10.1088_1361-6641_ad0dac	Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).	false	true	false
dataset	10.1038_s41586-023-06257-4	doi10.1038_s41586-023-06257-4	Data availabilitySequencing data are available from the National Center for Biotechnology Information Small Read Archive under the accession number PRJNA848233. Mouse genome sequence and annotation (build mm10/GRCm38.92) were downloaded from the ftp sites https://ftp.ensembl.org/pub/release-92/fasta/mus_musculus/dna/ and https://ftp.ensembl.org/pub/release-92/gtf/mus_musculus/, respectively. Transposon consensus sequences were obtained from Repbase (v.27.02; https://www.girinst.org/repbase/).Code availabilityCode used in this work has been deposited at GitHub (https://github.com/ildargv/Gainetdinov_et_al_2023).	true	true	true
dataset	10.1088_1361-6528_acf3ee	doi10.1088_1361-6528_acf3ee	Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.	false	true	false
dataset	10.1186_s12879-023-08167-2	doi10.1186_s12879-023-08167-2	Data availabilityThe datasets used and/or analysed during the current study are available from the corresponding author upon reasonable request.	true	true	false
dataset	10.1088_1402-4896_ad1233	doi10.1088_1402-4896_ad1233	Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.	false	true	false
dataset	10.1371_journal.pone.0251177	doi10.1371_journal.pone.0251177	Data Availability Statement The data underlying this study are owned by Youth19 (https://www.youth19.ac.nz/) and are available upon request. Interested and qualified researchers may submit data access requests to https://www.youth19.ac.nz/contact. The authors are members of the Youth2019 research group. However, other researchers would be able to access the same data on request.	false	true	false
dataset	10.1126_science.add5327	doi10.1126_science.add5327	Data and materials availability: All sequencing data have been deposited at the Gene Expression Omnibus (GEO) under accession GSE207943. An interactive data browser to plot gene expression trends on tSNE or FDL visualizations of scRNA-seq data is accessible at http://pdac-progression-browser.us-east-1.elasticbeanstalk.com. Code for data analysis is available at https://github.com/dpeerlab/pdac-progression (DOI: 10.5281/zenodo.7738450). KC-shIL33 ESCs for the production of EPO-GEMMs are available from the corresponding author (S.W.L.) upon request.	true	true	true
dataset	10.1038_s41467-019-09354-z	doi10.1038_s41467-019-09354-z	Data availability All data generated during this study supporting its findings are available within the paper and the Supplementary Information. All data are available from the corresponding author upon reasonable request.	false	true	false
dataset	10.1371_journal.pone.0285756	doi10.1371_journal.pone.0285756	Data Availability Statement All raw sequencing data and genome assemblies presented here are available at the NCBI under the Bioproject IDs PRJNA886864, PRJNA886865 and PRJNA886875.	false	true	false
dataset	10.7717_peerj.10648	doi10.7717_peerj.10648	Data Availability The following information was supplied regarding data availability: The raw data and the code are available in the Supplemental Files.	false	true	true
dataset	10.1038_s41590-023-01558-2	doi10.1038_s41590-023-01558-2	Data availabilityAll iMGL data have been deposited on Terra, including raw and Cell Ranger outputs of iMGL (H1 and CW50118, CW500036 and CW70437) scRNA-seq, fastq and bam files of iMGL untreated and treated with ANs for ATAC-seq, and fastq and bam files of MITF-overexpression and mCherry control bulk RNA sequencing. Summary level data are available at https://app.terra.bio/#workspaces/Stevenslab/public_iMGLdatasets. Raw data are available via managed access at DUOS (https://duos.org); ID: DUOS-000151. Any additional data are available from the corresponding authors.Code availabilityCode is available from the corresponding authors.	true	true	true
dataset	10.1371_journal.pone.0244447	doi10.1371_journal.pone.0244447	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1371_journal.pbio.3000484	doi10.1371_journal.pbio.3000484	Data Availability Statement Code and key data for Figs 5G, 6B, 8E, and S2–S4 Figs are available at https://github.com/mikepab/ratiometric-gpcr-particle-sims. Code for Figs 2G, 4D, 4E, 8B, and 8C is available at https://github.com/DebrajGhose/Ratiometric-GPCR-signaling-enables-directional-sensing-in-yeast. All other relevant data are available in S1 Data spreadsheet.	false	true	true
dataset	10.1016_j.xgen.2023.100356	doi10.1016_j.xgen.2023.100356	Data and code availabilityIndividual level SNP-array data is part of the Psychiatric Genomic Consortium with the corresponding privacy agreement. Access can be provided by applying through this website (https://www.med.unc.edu/pgc/shared-methods/how-to/). Whole genome sequncing data for validation experiments will be uploaded to the NIMH Data Archive after publication NDA: (https://nda.nih.gov/).Filtered sCNV callset is inTable S2.Scripts used to generate the main figures and analyses are available in a frozen Zenodo repository Zenodo: https://doi.org/10.5281/zenodo.7778664.PyMOL was used for ABCB11 schematic in Figure 4 using PBID: 6LR0.	false	true	true
dataset	10.1371_journal.pcbi.1011956	doi10.1371_journal.pcbi.1011956	Data Availability Statement: The development of PeDViS is part of a research project that develops decision support tools for practitioners to limit SARS-CoV-2 transmission inside their venues. An open-access web-based simulation environment was created, named the SamenSlimOpen App (SSO app: https://www.samenslimopen.nl/de-tool/). The PeDViS model is at the core of this app (Section C in S1 Text). All code for the PeDViS model and data to recreate the described experiments are openly available on Gitlab (https://git.wur.nl/sso-public/pedvis).	false	true	true
dataset	10.1038_s41588-023-01424-9	doi10.1038_s41588-023-01424-9	Data availabilityPublicly available ChIP-seq datasets used in the present study: accession nos. GSM1817193 and GSM714811 for NR2F1; GSM714812 for NR2F2; GSM935589 for GATA2; and GSM1010738 and GSM1602667 for GATA3. Conserved TF-binding sites were obtained using rVista 2.0 (https://rvista.dcode.org). Additional epigenetic data were explored using the ENCODE database (https://www.encodeproject.org). GRCh37/hg19 human reference genome under Sequence Read Archive (SRA) accession no. PRJNA31257 and GRCm38/mm10 mouse reference genome under SRA accession no. PRJNA20689 were used for the alignment of human and mouse sequencing data, respectively. GnomAD and 1,000 genome frequencies were extracted from https://gnomad.broadinstitute.org and https://www.internationalgenome.org, respectively. Common structural variant data were obtained from the DGV (http://dgv.tcag.ca/dgv/app/home) and GoNL SV database (https://www.nlgenome.nl/login). Exome sequence and SNP data from a subset of participants are available through dbGaP Phs001383.v1.p1. WGS data from Cohort 1 participants are available through dbGaP Phs001247.v1.p1; Radboudumc consent does not allow for broad sharing via repositories and, thus, Cohort 2 WGS data are available on request and after a positive evaluation by a local data access committee confirming that the proposed re-use is in line with original consent obtained. ScRNA-seq and CUT&Tag sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus SuperSeries accession no. GSE223274. LacZ images are uploaded to the Vista enhancer browser (https://enhancer.lbl.gov) and can be retrieved by their human coordinates as follows: hs2664 (cRE1) chr3:128,175,331–128,177,163; hs2665 (cRE2) chr3:128,177,164–128,179,169; hs2666 (cRE3) chr3:128,186,421–128,188,215; hs2667 (cRE1 + cRE2) chr3:128,175,331–128,179,169; and hs2668 (cRE2 + cRE3) chr3:128,177,164–128,188,215. Mice are available on request. Source data are provided with this paper.Code availabilityThe codes used for scRNA-seq and single-cell CUT&Tag data processing and analyses are available at https://zenodo.org/badge/latestdoi/637923997.	false	true	true
dataset	10.1371_journal.ppat.1011251	doi10.1371_journal.ppat.1011251	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1371_journal.pone.0240850	doi10.1371_journal.pone.0240850	Data Availability Statement All relevant data are within the paper and it’s supporting information files. There is no separate data set to share.	false	true	false
dataset	10	doi10	Data availability statement No data are available. The data are pseudonymised according to national (Swedish) and European Union legislation, and cannot be anonymised and published in an open repository. Participants in the trial have not consented for their data to be shared with other international researchers for research purposes.	false	true	false
dataset	10.1088_2053-1591_ad13cc	doi10.1088_2053-1591_ad13cc	Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://www.scholarmate.com/P/bErAf2.	false	true	false
dataset	10.1371_journal.pgen.1007911	doi10.1371_journal.pgen.1007911	Data Availability Statement All relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1371_journal.pone.0225522	doi10.1371_journal.pone.0225522	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1038_s41598-023-32207-1	doi10.1038_s41598-023-32207-1	Data availabilityAnonymised survey data (duplicates only removed) and focus group data (presented at theme level) is available online using the https://doi.org/10.17026/dans-xp4-j8t7.	false	true	false
dataset	10.1371_journal.pcbi.1007309	doi10.1371_journal.pcbi.1007309	Data Availability Statement The datasets supporting the conclusions of this article are available in the GEO repository under the accession GSE125279, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125279. The miRWoods software is available at https://github.com/hendrixlab/miRWoods.	true	true	true
dataset	10.3389_fimmu.2021.668217	doi10.3389_fimmu.2021.668217	DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.	false	true	false
dataset	10.1186_s40360-020-00405-6	doi10.1186_s40360-020-00405-6	Availability of data and materialsData-sets generated and/or analyzed during the current study are available in the thesis submitted by the first author in the University library and also available with the corresponding author on reasonable request.	true	true	false
dataset	10.1126_science.abe9403	doi10.1126_science.abe9403	Data and materials availability: Further information and requests for resources and reagents should be directed to and will be fulfilled by N.J.K. (nevan.krogan@ucsf.edu). The MS proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD021588 (100). An interactive version of PPI data can be found at https://kroganlab.ucsf.edu/network-maps. Atomic coordinates and the cryo-EM map of the reported Tom70-ORF9b structure have been deposited in the Protein Data Bank under accession code 7KDT and in the Electron Microscopy Data Bank under accession code EMD-22829. Expression vectors used in this study are readily available from the authors for biomedical researchers and educators in the nonprofit sector. The Aetion Evidence Platform used for the clinical analysis is available under license from Aetion, New York, NY. To protect patient privacy, data used in real-world analyses are available for inspection by qualified researchers under confidentiality and third-party agreements with Aetion and/or HealthVerity. This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/. This license does not apply to figures/photos/artwork or other content included in the article that is credited to a third party; obtain authorization from the rights holder before using such material.	false	true	true
dataset	10.1371_journal.ppat.1011341	doi10.1371_journal.ppat.1011341	Data Availability Statement Density maps of qMCRV and tMCRV with icosahedral symmetry and D5 symmetry have been deposited in the EMDataBank (EMDB) under entries EMD-33403 for icosahedral qMCRV, EMD-33404 for D5 symmetric qMCRV, EMD-33405 and EMD-33406 for icosahedral and D5 symmetric tMCRV, respectively. Atomic models for the asymmetric unit of MCRV for both icosahedral and D5 reconstruction have been deposited in the Protein Data Bank (PDB) under entries 7XR2 and 7XR3 respectively.	true	true	true
dataset	10.1371_journal.ppat.1011443	doi10.1371_journal.ppat.1011443	Data Availability Statement All relevant data are within the paper and its Supporting Information files.	false	true	false
dataset	10.1371_journal.pone.0216797	doi10.1371_journal.pone.0216797	Data Availability Statement The data generated and analyzed during the current study are not publicly available as full transcripts for ethical reasons because even after removing directly identifiable information such as names or addresses, participant identify may be difficult to fully conceal and research locations may remain potentially identifiable, presenting a risk of deductive disclosure. However, relevant excerpts are available from the corresponding author Aurélie Brunie (abrunie@fhi360.org), author Rebecca Callahan (rcallahan@fhi360.org) or institutional access via opendata@fhi360.org on request.	false	true	true
dataset	10.1371_journal.pone.0297420	doi10.1371_journal.pone.0297420	Data Availability Statement: All relevant data are within the manuscript and its Supporting information files.	false	true	true
dataset	10.2196_46793	doi10.2196_46793	Data Availabilty The data sets generated during or analyzed during this study are available from the corresponding author on reasonable request.	true	true	false
dataset	10.1186_s12879-022-07139-2	doi10.1186_s12879-022-07139-2	Availability of data and materialsDue to their sensitive nature, restrictions apply to the availability of the data that support the findings, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of Cedars-Sinai Medical Center.	false	true	false
dataset	10.1371_journal.pone.0283546	doi10.1371_journal.pone.0283546	Data Availability Statement We have uploaded the dataset from our experiment to a public repository RepOD - https://doi.org/10.18150/KFMBPG.	false	true	false
dataset	10.1038_s41586-023-05854-7	doi10.1038_s41586-023-05854-7	Data availability The cryo-EM map has been deposited in the Electron Microscopy Data Bank under the accession code EMD-29637. The corresponding atomic model has been deposited in the Protein Data Bank under accession code 8FZQ. The data that support the findings of this study are available from the authors upon reasonable request.	false	true	true
dataset	10.1088_1361-6560_acfec5	doi10.1088_1361-6560_acfec5	Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).	false	true	false
dataset	10.1371_journal.pone.0214982	doi10.1371_journal.pone.0214982	Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.	false	true	true
dataset	10.1186_s12884-021-03852-z	doi10.1186_s12884-021-03852-z	Availability of data and materialsThe datasets generated and/or analyzed during the current study are not publicly available to guarantee the anonymity of individuals. Please contact Tim A. Bruckner (Tim.bruckner@uci.edu) to request access to the datasets used in this study.	false	true	false
dataset	10.1186_s12902-019-0370-7	doi10.1186_s12902-019-0370-7	Availability of data and materialsThe datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.	false	true	false
dataset	10.1186_s40249-020-0628-3	doi10.1186_s40249-020-0628-3	Availability of data and materialsAll collected data is confidentially kept at both the Global Health Institute, University of Antwerp (Belgium) and the Infectious Disease Institute in Kampala (Uganda). The datasets are available from the corresponding author on a reasonable request.	false	true	false
dataset	10.2196_43669	doi10.2196_43669	Data Availability The WIC2 team agrees to share deidentified individual participant data that underlie the results reported in this study, the study protocol, and the statistical analysis plan. Data will be available for 6 months following publication for 5 years. Data will only be shared with academic researchers who provide a methodologically sound proposal to achieve aims related to primary or secondary outcomes and upon completion of a data use agreement. Requests should be directed to Suzanne.Mitchell2@umassmed.edu.	false	true	false
dataset	10.1126_sciadv.ade8778	doi10.1126_sciadv.ade8778	Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. The ciscleaving VSV-based Mpro assay can be provided by D.v.L. pending scientific review and a completed material transfer agreement. Requests for the ciscleaving VSV-based Mpro assay should be submitted to D.v.L. (dorothee.von-laer@i-med.ac.at). Requests for the transfection-based gain-of-signal Mpro system should be submitted to R.S.H. (rsh@uthscsa.edu).	true	true	false
dataset	10.1088_1402-4896_ad1651	doi10.1088_1402-4896_ad1651	Data availability statementNo new data were created or analysed in this study.	false	true	false

dataset

10.1101_gad.343038.120

doi10.1101_gad.343038.120

Data and software availability Publicly available, published data sets can be accessed on the fol- lowing GEO accession numbers: single-cell RNA-seq data sets GSE133747 and GSE128033 and published bulk RNA-seq of tis- sue-resident macrophage populations GSE63340. Sequencing data sets performed in this study are available at the NCBI GEO under accession number GSE151015.

false

true

dataset

10.1088_1361-6560_ad07f5

doi10.1088_1361-6560_ad07f5

Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).

false

true

false

dataset

10.1186_s12866-023-02910-0

doi10.1186_s12866-023-02910-0

Availability of data and materialsAll data and materials are available for this work and can be accessed from the corresponding author.

true

false

dataset

10.1088_1402-4896_ad1088

doi10.1088_1402-4896_ad1088

Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).

false

true

false

dataset

10.1371_journal.pone.0239135

doi10.1371_journal.pone.0239135

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1371_journal.pgen.1008593

doi10.1371_journal.pgen.1008593

Data Availability Statement EPSPS sequencing data (MK421977-MK422097), NextRAD sequencing data Genbank: PRJNA515629) genome assembly (Genbank: VALG00000000) and Exome resequencing data (Genbank: PRJNA515629) are available in GenBank.

false

true

false

dataset

10.1371_journal.pclm.0000243

doi10.1371_journal.pclm.0000243

Data Availability Statement: Survey data available via the Open Science Framework repository. The relevant DOI is: DOI 10.17605/OSF.IO/7QR8C.

false

true

false

dataset

10.1073_pnas.2220537120

doi10.1073_pnas.2220537120

Data, Materials, and Software AvailabilityGitHub hosts the FPalyze (60) and SMBalyze (61) R packages. The custom scripts referenced in these methods are available on GitHub (62). For the SM experiments, raw movie files and SMBalyze output files have been uploaded to Zenodo (63), with an embargo that expires in October 2023. Our pMALcPP vector and pMALcPP/MS2-CP plasmids will be deposited to Addgene. All study data are included in the article and/or SI Appendix.

true

dataset

10.1371_journal.pone.0284692

doi10.1371_journal.pone.0284692

Data Availability Statement The third party financial data files are available from the China Economic and Financial Research Database (CSMAR) (https://www.gtarsc.com) and Wind database (https://www.wind.com.cn). The authors confirm that others would be able to access or request these data in the same manner as the authors. The authors also confirm that they did not have any special access or request privileges that others would not have.

true

false

dataset

10.1371_journal.ppat.1012064

doi10.1371_journal.ppat.1012064

Data Availability Statement: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting information files.

false

true

false

dataset

10.1038_s41598-023-34648-0

doi10.1038_s41598-023-34648-0

Data availabilityAll data and materials have been made publicly available at the National Center for Health Statistics website (https://www.cdc.gov/nchs/nhanes/index.htm).

true

false

dataset

10.1016_j.chom.2023.05.025

doi10.1016_j.chom.2023.05.025

Data and code availabilityAll data are available via links in the Method details section and key resources table. See https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera for results files. The raw sequencing data for this study can be found in the NCBI Sequence Read Archive under BioProject number PRJNA947170.All code are at https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera and via the links in the key resources table.

false

true

dataset

10.1038_s43247-022-00597-1

doi10.1038_s43247-022-00597-1

Data availability The data for Fig. 1 is available via figshare (https://doi.org/10.6084/m9.figshare. 21183709) and data associated with Fig. 3 is available from BCO-DMO (https://www. bco-dmo.org/dataset/740051).

false

true

false

dataset

10.1371_journal.pone.0270038

doi10.1371_journal.pone.0270038

Data Availability Statement All relevant data are within the paper and its Supporting information files.

false

true

false

dataset

10.1371_journal.pone.0240987

doi10.1371_journal.pone.0240987

Data Availability Statement Readers can access the dataset by registering an account with the Korean CDC website (https://knhanes.cdc.go.kr/knhanes/index.do). There is a blue bar on the top of the website. Click the third menu, written in Korean, “원시자료” (The content about the raw data) on the blue bar. There is a second submenu below the blue bar, written in Korean “원시자료 다운로드 (Download the raw data)”. Once readers click this, an e-mail address for log-in is required. Once logged in, readers can download the raw data from 1998-2016 Korea National Health and Nutrition Examination Survey database using SAS or SPSS. The authors do not have any special access privileges to the data. For other data related inquiries, please contact the corresponding author.

false

true

dataset

10.7554/elife

doi10.7554/elife

Data availability All data generated or analysed during this study are included in the manuscript and supporting files. Source data files have been provided in Source Data 1.

false

true

dataset

10.1371_journal.pone.0285211

doi10.1371_journal.pone.0285211

Data Availability Statement All of the source code of this paper is publicly available at https://github.com/Vang-z/HGJO.

false

true

dataset

10.1186_s12870-023-04281-0

doi10.1186_s12870-023-04281-0

Availability of data and materials The datasets generated and/or analyzed during the current study are available in the NCBI repository as PRJNA878550 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878550, frozen root ATAC-seq) and PRJNA878551 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878551, fresh root ATAC-seq). The INTACT vectors and lines generated during the current study will be available from ADDGENE and from the corresponding author on request. Both the root and leaf ATAC-Seq data can be accessed through the GrainGenes Genome Browsers by selecting the CS reference genome RefSeq v1.0 (https://wheat.pw.usda.gov/GG3/genome_browser).

false

true

dataset

10.1073_pnas.2302191120

doi10.1073_pnas.2302191120

Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix.

true

dataset

10.1038_s41422-023-00802-6

doi10.1038_s41422-023-00802-6

Data availabilityThe scRNA-seq and spatial transcriptome data reported in this paper have been deposited in the OMIX, China National Center for Bioinformation/Beijing Institute of Genomics, Chinese Academy of Sciences (https://ngdc.cncb.ac.cn/omix: accession number OMIX003147). The raw data reported in this study can be requested from the corresponding author (chen_jiekai@gibh.ac.cn).

true

false

dataset

10.1002_hbm.25102

doi10.1002_hbm.25102

DATA AVAILABILITY STATEMENTThe data that support the findings of this study are available from the corresponding author upon reasonable request.

false

true

false

dataset

10.1371_journal.pone.0284383

doi10.1371_journal.pone.0284383

Data Availability Statement All relevant data are within the manuscript and its Supporting information files.

false

true

dataset

10.1111_pbi.13168

doi10.1111_pbi.13168

Data availability The target deep sequencing and WGS data have been submitted to the NCBI Sequence Read Archive (SRA) BioProject ID: PRJNA380842.

false

true

false

dataset

10.1371_journal.ppat.1009441

doi10.1371_journal.ppat.1009441

Data Availability Statement: Raw RNAseq data have been deposited at the National Center for Biotechnology Information (NCBI) Sequence Read Archive as Bioproject number PRJNA593260. All other data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1101_gr.277334.122

doi10.1101_gr.277334.122

Data access All raw and processed sequencing data generated in this study have been submitted to the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/) under accession number PRJEB54100. The DeepVariant callsets for selected samples (HG02486, HG02572, HG02622, HG02886, HG03516, HG03540, HG03579) and FASTA sequences from selected low-complexity regions (n = 27) are available at Zenodo (https://doi.org/10.5281/zenodo.7392259) or at the IGSR FTP site (http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC2/working/publications/202212_Porubsky_GenomeResearch). All custom scripts are available in the Supplemental Code and at Zenodo (https://doi.org/10.5281/zenodo.7392259).

false

true

dataset

10.1088_2515-7620_acf02d

doi10.1088_2515-7620_acf02d

Data availability statementSimulated datasets are available to be requested from the corresponding author. The observational data can be retrieved from the National Meteorology Agency of Ethiopia for the Wolaita Sodo station. WRF code can be obtained from WRF website freely.

false

true

dataset

10.1038_s41586-023-05989-7

doi10.1038_s41586-023-05989-7

Data availabilityThe 16S rRNA and metagenomics sequencing reads are available on NCBI under BioProject PRJNA822660. The mass spectrometry proteomics datasets are available through the ProteomeXchange Consortium in the PRIDE79 partner repository with dataset identifier PXD038906. The targeted and non-targeted bile acid metabolomics datasets are available on Metabolomics Workbench under project numbers ST002073 and ST002075. The minimum datasets necessary for reproduction of figures or extended research related to this article are available on GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.Code availabilityCustom code for the generation of figures and statistical calculations in this manuscript is available on Zenodo at 10.5281/zenodo.7683655 (ref. 80) and GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.

false

true

dataset

10.1038_s41598-022-27193-9

doi10.1038_s41598-022-27193-9

Data availability The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.

false

true

false

dataset

10.1371_journal.pone.0232695

doi10.1371_journal.pone.0232695

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1371_journal.pgen.1009334

doi10.1371_journal.pgen.1009334

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1371_journal.pwat.0000075

doi10.1371_journal.pwat.0000075

Data Availability Statement To ensure confidentiality of participants’ information as agreed up on during Ethical approval and Consent Process, qualitative interview transcripts’ file is only visible to the direct research team or through Mbarara University of Science and Technology Research Ethics Committee, P.O. Box 1410 Mbarara, Tel: +256-48-543-3795, Fax: +256-48-542-0782, E-mail: irc@must.ac.ug, mustirb@gmail.com since they are not publically available.

false

true

false

dataset

10.1186_s13059-021-02387-y

doi10.1186_s13059-021-02387-y

Availability of data and materialsAll data newly generated in this study is disclosed in the published manuscript. The plasmids used for local production of LAMP enzymes have been deposited on Addgene (#170277, 170278, 170279).

false

true

false

dataset

10.1371_journal.pone.0262792

doi10.1371_journal.pone.0262792

Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.3390_biom12081122

doi10.3390_biom12081122

Data Availability Statement: NMR data and pulse sequences are available at https://comdnmr. nysbc.org/comd-nmr-dissem, (accessed on 27 June 2022).

false

true

false

dataset

10.1073/pnas

doi10.1073/pnas

Materials and Data Availability. Requests for reagents and code should be directed to the corresponding author. RPPA data are available on Figshare at (https://figshare.com/articles/RPPA_data/12199835/1).

true

dataset

10.1371_journal.pone.0243633

doi10.1371_journal.pone.0243633

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1038_s41467-022-29612-x

doi10.1038_s41467-022-29612-x

Data availability The data that support the findings of this study are available from the corresponding author (Y.O.) upon reasonable request.

false

true

false

dataset

10.1371_journal.pone.0244089

doi10.1371_journal.pone.0244089

Data Availability Statement All relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1371_journal.pone.0262642

doi10.1371_journal.pone.0262642

Data Availability Statement All relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1371_journal.pone.0232245

doi10.1371_journal.pone.0232245

Data Availability Statement Full details on the methods and the clinical studies included in the network meta-analysis that informed the economic analysis are provided in Mavranezouli et al., Psychol Med. 2020 Mar;50(4):542-555. doi: 10.1017/S0033291720000070. All other relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1038_s41598-019-49459-5

doi10.1038_s41598-019-49459-5

Data Availability All data analyzed during this study is included in Supplementary Information files.

false

true

false

dataset

10.3390_ijerph20031722

doi10.3390_ijerph20031722

Data Availability Statement: The raw data and coding framework used in this study can be accessed on request from the corresponding author.

false

true

false

dataset

10

doi10

Data availability The Whole Exome Sequencing and RNA-seq data that support the findings of this study have been deposited in dbGAP with accession code # phs002482.v1.p1. All relevant data supporting the findings of this study are available in the manuscript and its supplementary information file and source data file. Source data are provided with this paper.

false

true

dataset

10.1371_journal.pone.0301029

doi10.1371_journal.pone.0301029

Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1088_1748-9326_acffde

doi10.1088_1748-9326_acffde

Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.

false

true

false

dataset

10.1371_journal.pclm.0000362

doi10.1371_journal.pclm.0000362

Data Availability Statement: The cancer incidence, NDVI, precipitation, temperature, solar radiation, ozone concentration, population density, and other covariates are available online: CI5PLUS: CANCER INCIDENCE IN FIVE CONTINENTS TIME TRENDS: https://ci5.iarc.fr/CI5plus/Pages/download.aspx; The Surveillance, Epidemiology, and End Results (SEER) Program: https://seer.cancer.gov/data/; USGS Landsat 5 TM Collection 2 Tier 1 TOA Reflectance, USGS Landsat 7 Collection 2 Tier 1 TOA Reflectance: https://www.usgs.gov/landsat-missions/landsat-data-access; ERA5-Land Daily Aggregated - ECMWF Climate Reanalysis: https://cds.climate.copernicus.eu/cdsapp#!/search?type=dataset; TOMS and OMI Merged Ozone Data: https://developers.google.com/earth-engine/datasets/catalog/TOMS_MERGED; GHS-POP R2023A - GHS population grid multitemporal (1975-2030): https://data.jrc.ec.europa.eu/dataset/2ff68a52-5b5b-4a22-8f40-c41da8332cfe; Global/Regional estimates (V5.GL.03) of surface PM2.5: https://sites.wustl.edu/acag/datasets/surface-pm2-5/; CEIC: Global Economic Data, Indicators, Charts & Forecasts https://www.ceicdata.com/en/products; Global Burden of Disease Study 2019 (GBD 2019) Smoking Tobacco Use Prevalence 1990-2019: https://ghdx.healthdata.org/record/ihme-data/gbd-2019-smoking-tobacco-use-prevalence-1990-2019; Code availability: https://github.com/johnjiresearchlab/ClimateChangeCancer.

false

true

dataset

10.1371_journal.pdig.0000447

doi10.1371_journal.pdig.0000447

Data Availability Statement: The human RNA raw sequencing data in this study requires deposit into the Database of Genotypes and Phenotypes (dbGAP) of the National Center for Biotechnology Information (United States National Library of Medicine) with controlled access. The data will be available through dbGaP (https://www.ncbi.nlm.nih.gov/gap/) under accession number: phs003112.v1.p1. The public RNA data used for validation in this study is available in the GEO database under accession number GSE142530 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142530). Proteomic data can be found in the MassIVE repository under accession number MSV000089168.

false

true

dataset

10.1038_s41586-023-06322-y

doi10.1038_s41586-023-06322-y

Data availabilityThe data supporting the findings of this study are available within the paper and its Supplementary Information files. Sequences for all the sgRNAs used in this study are provided in Supplementary Table 1. Genome-wide CRISPR screening data are provided in Supplementary Tables 2 and 3. RNA-seq data are provided in Supplementary Tables 4 and 5. The raw RNA-seq data have been deposited and made publicly available in the NCBI Gene Expression Omnibus with accession number GSE233548. Full versions of all blots are provided in Supplementary Fig. 1. The gating strategies of flow cytometry are provided in Supplementary Fig. 2. Gene expression data derived from nasopharyngeal swab samples is publicly available in dbGaP (https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?login=&page=login) with accession no. phs002433.v1.p1. The human genome reference (hg38) used in the RNA-seq analysis is available in the NCBI genome assembly with accession number GCF_000001405.39. The protein expression profiles are available in the web-based Human Protein Atlas database (https://www.proteinatlas.org/). The transcriptional-factor binding profiles are available in the web-based JASPAR database (https://jaspar.genereg.net/). The materials, reagents and other experimental data are available from the corresponding author upon request. Source data are provided with this paper.Code availabilityThe source code used for calculating membrane bending rigidity has been deposited in Zenodo (10.5281/zenodo.7948870). The publicly available code used for MDS is referenced in the Methods.

false

true

dataset

10.1371_journal.pone.0222343

doi10.1371_journal.pone.0222343

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1038_s41598-023-32045-1

doi10.1038_s41598-023-32045-1

Data availabilityAll the data are available online in Replication data to Prostaglandin synthases and pro-inflammatory cytokine gene expression dynamics in bovine endometrial cells exposed to cow blood plasma small extracellular vesicles (sEV) reflect the fertility breeding value—Harvard Dataverse79.

false

true

false

dataset

10

doi10

Data Availability Statement This manuscript has no associated data or the data will not be deposited. [Authors’ comment: The datasets generated during and/or analysed during the current study are available in the repository ‘Supplemental data for material radiopurity control in the XENONnT experiment’, https://zenodo.org/record/5767294.]

false

true

dataset

10.1371_journal.pone.0284934

doi10.1371_journal.pone.0284934

Data Availability Statement All relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1371_journal.pone.0262773

doi10.1371_journal.pone.0262773

Data Availability Statement The traction force microscopy code developed for this project is available at https://github.com/usschwarz/DirectMethod.

false

true

dataset

10.1016_j.molcel.2023.05.013

doi10.1016_j.molcel.2023.05.013

Data and code availabilityAll Illumina NGS and Oxford Nanopore Technologies (ONT) sequencing data generated from this publication have been deposited and are publicly available as of the date of publication. Accession numbers are listed in the key resources table.All original code for transposition junction NGS reads analysis has been deposited to GitHub and Zenodo. DOI are listed in the key resources table.

false

true

dataset

10.1371_journal.pclm.0000345

doi10.1371_journal.pclm.0000345

Data Availability Statement: The data that support the findings of this study are openly available via the ISIMIP data repository (https://data.isimip.org/). Summary results are included in the Supporting Information and detailed results for each site are available on the A.P.E.S. Wiki (wiki.iucnapesportal.org).

false

true

dataset

10.1111_csp2.348

doi10.1111_csp2.348

DATA AVAILABILITY STATEMENT No new data were generated for this perspectives article.

false

true

false

dataset

10.1371_journal.pone.0232176

doi10.1371_journal.pone.0232176

Data Availability Statement The data underlying the results presented in the study are available from the Medical Information Mart for Intensive Care (MIMIC-III), a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. Because the data contain sensitive patient information, MIMIC-III has not made the data sets publicly available. More information about MIMIC-III can be found on their website (https://mimic.mit.edu/about/mimic/). To access this data, interested researchers must first complete the CITI “Data or Specimens Only Research” course (https://www.citiprogram.org/index.cfm?pageID=154&icat=0&ac=0) and then submit an application for credentialed access through PhysioNet (https://physionet.org/content/mimiciii/). For more detailed instructions on how to apply for data access, please see the Supporting Information files of this article. This study used the publicly available Multiparameter Intelligent Monitoring in Intensive Care (MIMIC) III database version 1.4.

false

true

dataset

10.1088_1361-6641_ad0dac

doi10.1088_1361-6641_ad0dac

Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).

false

true

false

dataset

10.1038_s41586-023-06257-4

doi10.1038_s41586-023-06257-4

Data availabilitySequencing data are available from the National Center for Biotechnology Information Small Read Archive under the accession number PRJNA848233. Mouse genome sequence and annotation (build mm10/GRCm38.92) were downloaded from the ftp sites https://ftp.ensembl.org/pub/release-92/fasta/mus_musculus/dna/ and https://ftp.ensembl.org/pub/release-92/gtf/mus_musculus/, respectively. Transposon consensus sequences were obtained from Repbase (v.27.02; https://www.girinst.org/repbase/).Code availabilityCode used in this work has been deposited at GitHub (https://github.com/ildargv/Gainetdinov_et_al_2023).

true

dataset

10.1088_1361-6528_acf3ee

doi10.1088_1361-6528_acf3ee

Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.

false

true

false

dataset

10.1186_s12879-023-08167-2

doi10.1186_s12879-023-08167-2

Data availabilityThe datasets used and/or analysed during the current study are available from the corresponding author upon reasonable request.

true

false

dataset

10.1088_1402-4896_ad1233

doi10.1088_1402-4896_ad1233

Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.

false

true

false

dataset

10.1371_journal.pone.0251177

doi10.1371_journal.pone.0251177

Data Availability Statement The data underlying this study are owned by Youth19 (https://www.youth19.ac.nz/) and are available upon request. Interested and qualified researchers may submit data access requests to https://www.youth19.ac.nz/contact. The authors are members of the Youth2019 research group. However, other researchers would be able to access the same data on request.

false

true

false

dataset

10.1126_science.add5327

doi10.1126_science.add5327

Data and materials availability: All sequencing data have been deposited at the Gene Expression Omnibus (GEO) under accession GSE207943. An interactive data browser to plot gene expression trends on tSNE or FDL visualizations of scRNA-seq data is accessible at http://pdac-progression-browser.us-east-1.elasticbeanstalk.com. Code for data analysis is available at https://github.com/dpeerlab/pdac-progression (DOI: 10.5281/zenodo.7738450). KC-shIL33 ESCs for the production of EPO-GEMMs are available from the corresponding author (S.W.L.) upon request.

true

dataset

10.1038_s41467-019-09354-z

doi10.1038_s41467-019-09354-z

Data availability All data generated during this study supporting its findings are available within the paper and the Supplementary Information. All data are available from the corresponding author upon reasonable request.

false

true

false

dataset

10.1371_journal.pone.0285756

doi10.1371_journal.pone.0285756

Data Availability Statement All raw sequencing data and genome assemblies presented here are available at the NCBI under the Bioproject IDs PRJNA886864, PRJNA886865 and PRJNA886875.

false

true

false

dataset

10.7717_peerj.10648

doi10.7717_peerj.10648

Data Availability The following information was supplied regarding data availability: The raw data and the code are available in the Supplemental Files.

false

true

dataset

10.1038_s41590-023-01558-2

doi10.1038_s41590-023-01558-2

Data availabilityAll iMGL data have been deposited on Terra, including raw and Cell Ranger outputs of iMGL (H1 and CW50118, CW500036 and CW70437) scRNA-seq, fastq and bam files of iMGL untreated and treated with ANs for ATAC-seq, and fastq and bam files of MITF-overexpression and mCherry control bulk RNA sequencing. Summary level data are available at https://app.terra.bio/#workspaces/Stevenslab/public_iMGLdatasets. Raw data are available via managed access at DUOS (https://duos.org); ID: DUOS-000151. Any additional data are available from the corresponding authors.Code availabilityCode is available from the corresponding authors.

true

dataset

10.1371_journal.pone.0244447

doi10.1371_journal.pone.0244447

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1371_journal.pbio.3000484

doi10.1371_journal.pbio.3000484

Data Availability Statement Code and key data for Figs 5G, 6B, 8E, and S2–S4 Figs are available at https://github.com/mikepab/ratiometric-gpcr-particle-sims. Code for Figs 2G, 4D, 4E, 8B, and 8C is available at https://github.com/DebrajGhose/Ratiometric-GPCR-signaling-enables-directional-sensing-in-yeast. All other relevant data are available in S1 Data spreadsheet.

false

true

dataset

10.1016_j.xgen.2023.100356

doi10.1016_j.xgen.2023.100356

Data and code availabilityIndividual level SNP-array data is part of the Psychiatric Genomic Consortium with the corresponding privacy agreement. Access can be provided by applying through this website (https://www.med.unc.edu/pgc/shared-methods/how-to/). Whole genome sequncing data for validation experiments will be uploaded to the NIMH Data Archive after publication NDA: (https://nda.nih.gov/).Filtered sCNV callset is inTable S2.Scripts used to generate the main figures and analyses are available in a frozen Zenodo repository Zenodo: https://doi.org/10.5281/zenodo.7778664.PyMOL was used for ABCB11 schematic in Figure 4 using PBID: 6LR0.

false

true

dataset

10.1371_journal.pcbi.1011956

doi10.1371_journal.pcbi.1011956

Data Availability Statement: The development of PeDViS is part of a research project that develops decision support tools for practitioners to limit SARS-CoV-2 transmission inside their venues. An open-access web-based simulation environment was created, named the SamenSlimOpen App (SSO app: https://www.samenslimopen.nl/de-tool/). The PeDViS model is at the core of this app (Section C in S1 Text). All code for the PeDViS model and data to recreate the described experiments are openly available on Gitlab (https://git.wur.nl/sso-public/pedvis).

false

true

dataset

10.1038_s41588-023-01424-9

doi10.1038_s41588-023-01424-9

Data availabilityPublicly available ChIP-seq datasets used in the present study: accession nos. GSM1817193 and GSM714811 for NR2F1; GSM714812 for NR2F2; GSM935589 for GATA2; and GSM1010738 and GSM1602667 for GATA3. Conserved TF-binding sites were obtained using rVista 2.0 (https://rvista.dcode.org). Additional epigenetic data were explored using the ENCODE database (https://www.encodeproject.org). GRCh37/hg19 human reference genome under Sequence Read Archive (SRA) accession no. PRJNA31257 and GRCm38/mm10 mouse reference genome under SRA accession no. PRJNA20689 were used for the alignment of human and mouse sequencing data, respectively. GnomAD and 1,000 genome frequencies were extracted from https://gnomad.broadinstitute.org and https://www.internationalgenome.org, respectively. Common structural variant data were obtained from the DGV (http://dgv.tcag.ca/dgv/app/home) and GoNL SV database (https://www.nlgenome.nl/login). Exome sequence and SNP data from a subset of participants are available through dbGaP Phs001383.v1.p1. WGS data from Cohort 1 participants are available through dbGaP Phs001247.v1.p1; Radboudumc consent does not allow for broad sharing via repositories and, thus, Cohort 2 WGS data are available on request and after a positive evaluation by a local data access committee confirming that the proposed re-use is in line with original consent obtained. ScRNA-seq and CUT&Tag sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus SuperSeries accession no. GSE223274. LacZ images are uploaded to the Vista enhancer browser (https://enhancer.lbl.gov) and can be retrieved by their human coordinates as follows: hs2664 (cRE1) chr3:128,175,331–128,177,163; hs2665 (cRE2) chr3:128,177,164–128,179,169; hs2666 (cRE3) chr3:128,186,421–128,188,215; hs2667 (cRE1 + cRE2) chr3:128,175,331–128,179,169; and hs2668 (cRE2 + cRE3) chr3:128,177,164–128,188,215. Mice are available on request. Source data are provided with this paper.Code availabilityThe codes used for scRNA-seq and single-cell CUT&Tag data processing and analyses are available at https://zenodo.org/badge/latestdoi/637923997.

false

true

dataset

10.1371_journal.ppat.1011251

doi10.1371_journal.ppat.1011251

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1371_journal.pone.0240850

doi10.1371_journal.pone.0240850

Data Availability Statement All relevant data are within the paper and it’s supporting information files. There is no separate data set to share.

false

true

false

dataset

10

doi10

Data availability statement No data are available. The data are pseudonymised according to national (Swedish) and European Union legislation, and cannot be anonymised and published in an open repository. Participants in the trial have not consented for their data to be shared with other international researchers for research purposes.

false

true

false

dataset

10.1088_2053-1591_ad13cc

doi10.1088_2053-1591_ad13cc

Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://www.scholarmate.com/P/bErAf2.

false

true

false

dataset

10.1371_journal.pgen.1007911

doi10.1371_journal.pgen.1007911

Data Availability Statement All relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1371_journal.pone.0225522

doi10.1371_journal.pone.0225522

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1038_s41598-023-32207-1

doi10.1038_s41598-023-32207-1

Data availabilityAnonymised survey data (duplicates only removed) and focus group data (presented at theme level) is available online using the https://doi.org/10.17026/dans-xp4-j8t7.

false

true

false

dataset

10.1371_journal.pcbi.1007309

doi10.1371_journal.pcbi.1007309

Data Availability Statement The datasets supporting the conclusions of this article are available in the GEO repository under the accession GSE125279, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125279. The miRWoods software is available at https://github.com/hendrixlab/miRWoods.

true

dataset

10.3389_fimmu.2021.668217

doi10.3389_fimmu.2021.668217

DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.

false

true

false

dataset

10.1186_s40360-020-00405-6

doi10.1186_s40360-020-00405-6

Availability of data and materialsData-sets generated and/or analyzed during the current study are available in the thesis submitted by the first author in the University library and also available with the corresponding author on reasonable request.

true

false

dataset

10.1126_science.abe9403

doi10.1126_science.abe9403

Data and materials availability: Further information and requests for resources and reagents should be directed to and will be fulfilled by N.J.K. (nevan.krogan@ucsf.edu). The MS proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD021588 (100). An interactive version of PPI data can be found at https://kroganlab.ucsf.edu/network-maps. Atomic coordinates and the cryo-EM map of the reported Tom70-ORF9b structure have been deposited in the Protein Data Bank under accession code 7KDT and in the Electron Microscopy Data Bank under accession code EMD-22829. Expression vectors used in this study are readily available from the authors for biomedical researchers and educators in the nonprofit sector. The Aetion Evidence Platform used for the clinical analysis is available under license from Aetion, New York, NY. To protect patient privacy, data used in real-world analyses are available for inspection by qualified researchers under confidentiality and third-party agreements with Aetion and/or HealthVerity. This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/. This license does not apply to figures/photos/artwork or other content included in the article that is credited to a third party; obtain authorization from the rights holder before using such material.

false

true

dataset

10.1371_journal.ppat.1011341

doi10.1371_journal.ppat.1011341

Data Availability Statement Density maps of qMCRV and tMCRV with icosahedral symmetry and D5 symmetry have been deposited in the EMDataBank (EMDB) under entries EMD-33403 for icosahedral qMCRV, EMD-33404 for D5 symmetric qMCRV, EMD-33405 and EMD-33406 for icosahedral and D5 symmetric tMCRV, respectively. Atomic models for the asymmetric unit of MCRV for both icosahedral and D5 reconstruction have been deposited in the Protein Data Bank (PDB) under entries 7XR2 and 7XR3 respectively.

true

dataset

10.1371_journal.ppat.1011443

doi10.1371_journal.ppat.1011443

Data Availability Statement All relevant data are within the paper and its Supporting Information files.

false

true

false

dataset

10.1371_journal.pone.0216797

doi10.1371_journal.pone.0216797

Data Availability Statement The data generated and analyzed during the current study are not publicly available as full transcripts for ethical reasons because even after removing directly identifiable information such as names or addresses, participant identify may be difficult to fully conceal and research locations may remain potentially identifiable, presenting a risk of deductive disclosure. However, relevant excerpts are available from the corresponding author Aurélie Brunie (abrunie@fhi360.org), author Rebecca Callahan (rcallahan@fhi360.org) or institutional access via opendata@fhi360.org on request.

false

true

dataset

10.1371_journal.pone.0297420

doi10.1371_journal.pone.0297420

Data Availability Statement: All relevant data are within the manuscript and its Supporting information files.

false

true

dataset

10.2196_46793

doi10.2196_46793

Data Availabilty The data sets generated during or analyzed during this study are available from the corresponding author on reasonable request.

true

false

dataset

10.1186_s12879-022-07139-2

doi10.1186_s12879-022-07139-2

Availability of data and materialsDue to their sensitive nature, restrictions apply to the availability of the data that support the findings, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of Cedars-Sinai Medical Center.

false

true

false

dataset

10.1371_journal.pone.0283546

doi10.1371_journal.pone.0283546

Data Availability Statement We have uploaded the dataset from our experiment to a public repository RepOD - https://doi.org/10.18150/KFMBPG.

false

true

false

dataset

10.1038_s41586-023-05854-7

doi10.1038_s41586-023-05854-7

Data availability The cryo-EM map has been deposited in the Electron Microscopy Data Bank under the accession code EMD-29637. The corresponding atomic model has been deposited in the Protein Data Bank under accession code 8FZQ. The data that support the findings of this study are available from the authors upon reasonable request.

false

true

dataset

10.1088_1361-6560_acfec5

doi10.1088_1361-6560_acfec5

Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).

false

true

false

dataset

10.1371_journal.pone.0214982

doi10.1371_journal.pone.0214982

Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.

false

true

dataset

10.1186_s12884-021-03852-z

doi10.1186_s12884-021-03852-z

Availability of data and materialsThe datasets generated and/or analyzed during the current study are not publicly available to guarantee the anonymity of individuals. Please contact Tim A. Bruckner (Tim.bruckner@uci.edu) to request access to the datasets used in this study.

false

true

false

dataset

10.1186_s12902-019-0370-7

doi10.1186_s12902-019-0370-7

Availability of data and materialsThe datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.

false

true

false

dataset

10.1186_s40249-020-0628-3

doi10.1186_s40249-020-0628-3

Availability of data and materialsAll collected data is confidentially kept at both the Global Health Institute, University of Antwerp (Belgium) and the Infectious Disease Institute in Kampala (Uganda). The datasets are available from the corresponding author on a reasonable request.

false

true

false

dataset

10.2196_43669

doi10.2196_43669

Data Availability The WIC2 team agrees to share deidentified individual participant data that underlie the results reported in this study, the study protocol, and the statistical analysis plan. Data will be available for 6 months following publication for 5 years. Data will only be shared with academic researchers who provide a methodologically sound proposal to achieve aims related to primary or secondary outcomes and upon completion of a data use agreement. Requests should be directed to Suzanne.Mitchell2@umassmed.edu.

false

true

false

dataset

10.1126_sciadv.ade8778

doi10.1126_sciadv.ade8778

Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. The ciscleaving VSV-based Mpro assay can be provided by D.v.L. pending scientific review and a completed material transfer agreement. Requests for the ciscleaving VSV-based Mpro assay should be submitted to D.v.L. (dorothee.von-laer@i-med.ac.at). Requests for the transfection-based gain-of-signal Mpro system should be submitted to R.S.H. (rsh@uthscsa.edu).

true

false

dataset

10.1088_1402-4896_ad1651

doi10.1088_1402-4896_ad1651

Data availability statementNo new data were created or analysed in this study.

false

true

false