File size: 6,192 Bytes
294b529 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 | {
"readout": "interaction_matrix",
"prediction_tasks": [
{
"name": "K562_linear",
"type": "expression",
"cell_type": "K562",
"species": "homo_sapiens",
"scale": "linear"
},
{
"name": "K562_log",
"type": "expression",
"cell_type": "K562",
"species": "homo_sapiens",
"scale": "log"
},
{
"name": "hepg2_linear",
"type": "expression",
"cell_type": "hepg2",
"species": "mus_musculus",
"scale": "linear"
},
{
"name": "matcher_test",
"type": "expression",
"cell_type": "HeLa",
"species": "homo_sapiens",
"scale": "linear"
},
{
"name": "task2",
"type": "expression",
"cell_type": "ww6",
"species": "mus_musculus",
"scale": "linear"
},
{
"name": "task3",
"type": "accessibility",
"cell_type": "liver",
"species": "mus_musculus",
"scale": "log"
}
],
"upstream_seq": "ATGCATGC",
"downstream_seq": "GCTAGCTA",
"sequences": {
"short_seq": "ATCGATCGATGCTAC",
"boundary_1000": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
"long_seq": "AACCACTGTGTACTCGTTATAACATCTGGCAGTTAAAGTCGGGAGAATAGGAGCCGCAATACACAGTTTACCGCATCTAGACCTAACTGAGATACTGCCATAGACGACTAGCCATCCCTCTGGCTCTTAGATAGCCCGATACAGTGATTTTGAAAGGTTTGCGGGGCACAGCTATGACTTGCTTAGCTACGTGTGAGGGAAGGAACTTTTGCGTATTTGTATGTTCACCCGTCTACTACGCATGCGGGCAGATTATGTAGGTTGAGAGATGCGGGAGAAGTTCTCGACCTTCCCGTGGGACGTGAACCTATCCCCTAATAGAGCATTCCGTTCGAGCATGGCAGTAAGTACGCCTTCTCAATTGTGCTAACCTTCATCCCTATCAAAGCTTGGAGCCAATGATCAGGGTTATTCCCTTGGGACAGACTTCCTACTCACAGTCGGTCACATTGGGCTACTCCATGGGTCTTCAGCTTGACCCGGTCTGTTGGGCCGCGATTACGTGAGTTAGGGCCCCGGACTGCGCTGTATAGTCGATTCTCATCCGGCCCCCACATCTGGAAACCCCAACTTATTTAGATAACATGATTAGCCGAAGTTGCACGGCGTGTCCACCGTGGAGTCCTCCCCGGGTGTCCCTCCTTCATTTGACGATAAGCAGCGGCTACCACCATTGATTAACACAAGGAACGGTGATGTTAACATAGATTCGGCACATTACTCTTGTAGGTGTGGAATCACTTAGCTACGCGGCGAAGCCTTATGGCAAAACCGATGGGCAATGATTCGGGTAGCGCTAAAAGTCCATAGCACGTGCATCCCAACGTGGCGTGCGTACAGCTTGACCACCGCTTCACGCTAAGGTGCTGGCCACATGCTAAATTGATGCGCCTGCACTGCTCAAAGGATAATTACGAAGCGGGCGGCCTGGCGGGAGCACTACCCCATCGACGCGTACTCGAATACTGTTTATTGCTCACACATGAACAAATTAGTAGAGTGCCACTTTCAGCCCTCTTGTCGTCGGCGATGTGTGTAAAATGGCGTTGATGTGGATCGACTCTATAAAGGTATCTACTGATGCGTAGGGAGATCCGGAATCTATTGGCCTATGTCACTGAAACTATCCAAACACCCCATGTCGATACTGAACGTATCGACGCATACCTCCTTCCTTGAAAACGCACAATCATACAACTGGGCACATAATGCGTACGCCCATCTAGTACACCCATCTCTGTGGGTCCAGTTCAAGAGCTGGAAGAGCACCCTCCACAAGGTCAAGTGGTATCCTGGTAAGGTAAGCTCGTACCGTGATTCATGCGACAGGGGTAAGACCATCAGTAGTAGGGATAGTGCCAAACCTCACTCACCACTGCCAATAAGGGGTCCTTACCTGAAGAATAAGTGTCAGCCAGTGTAACCCGATGAGGAACCCAAAAGGCGAACCGGGCCAGACAACCCGGCGGTATCGCACTCAAAGCCGGGACACGACGCGTCACAGCCGGTAAGAGTAACCCCGGAGTGAAGACCTATGGGGCTGGATAAAACTGCCGTGGTAACCGCCTTCAACAACCCGAATACGTGGCACTTCAGGAGGCGCCCGGAGGGGGGATGTTTTCTACTATTCGAGGCCGTTCGTTATAACTAGTTGCGTTCCTAGCCGCTATAATTGTCTCTTTGCCGACTAATGAGAACAACCACACCATAGCGATTTGACGCGGCGCCTCGGAATACCGTTTCAGCAGGCGCTTGGTAAGGCCATCGCGAATACCAGGTATCGTGTAAGTAGCGTAGGCCCGCACGCAAGATAAACTGCTAGGGAACCGCGTTTCCACGACCGGTGCACGATTTAATTTCGCCGACGTGATGACATTCCAGGCAGTGCCTCTGCCGCCGGACCCCTCTCGTGATTGGGTAGCTGGACATGCCCTTGTAAGATATAACAAGAGCCTGCCTGTCTAATGATCTCACGGCGAAAGTCGGGGAGACAGCAGCGGCTGCAGACATTATACCGCAACAACACTAAGGTGAGATAACTCCGTAATTGACTACGCGTTCCTCTAGACCTTACTTGACCGGATACAGTGTCTTTGACACGTTTATGGGTTACAGCAATCACATCCAAGACTGGCTATGCACGAAGCAACTCTTGAGTGTTAAAATGTTGACCCCTGTATTTGGGATGCGGGTAGTAGATGAGTGCAGGGACTCCGAGGTCAAGTACATTACCCTCTCATAGGGGGCGTTCTAGATCACGTTACCACCATATCATTCGAGCATGACACCATCTCCGCTGTGCCCATCCTAGTAGTCATTATTCCTATCACGCTTTCGAGTGTCTGGTGGCGGATATCCCCCACGAATGAAAATGTTTTTCGCTGACAGTCATATTGGGGTGCTCCTAAGCTTTTCCACTTGGCTGGGTCAGCTAGGCCTCCGTGCCCGGAGTTTCGGCGCAGTGCTGCCGACAGCCGGCCATTGTCTTTGGGGCCTCATTCGAGGGTACCCGGACCTATCTTGTCGGGACCACCCGGGGTAGTCGTTGGGCTTATGCACCGAAAAGCCCTGCGCCGGCCTCCCCGCTACGGAAGGTGATAAGCTCCGGCAAGCAATTATGAACAACGCAAGGATCGCGGATATAAACAGAGAAACGGCTGATTACACCTGTTCGTGTGGTATCGGTAAATAGCCTCGCGGAGCCTTATGCCATACTCGTCCGCGGAGCACTCTGGTAATGCATATGGTCCACAGGACATTCGTCGCTTCCGGGTATGCGCTCTATTTGACGGTCCTTTGGCGCACAGATGCTGGCCACCATTTAAATTAGAGCGACTCCACATCTGTAAGGTCCGCCACGCAGACGACAGCCCAGGGAGACCACTGACCGATCTACCTGAACGGCAACCTTCTGTATCGTACTGGGGCGGAGAGATAACTACAGTGCCGCTTACAGCCCCTCTGTCGTCGCCGACGTCTGTAGTCTAGCCTCATTATGAT",
"range_at_start": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
"range_at_end": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
"full_range": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
"empty_range": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA"
},
"prediction_ranges": {
"short_seq": [0, 2],
"boundary_1000": [100, 900],
"long_seq": [300, 2999],
"range_at_start": [0, 10],
"range_at_end": [89, 99],
"full_range": [0, 99],
"empty_range": []
}
} |