id stringlengths 40 40 | repo_name stringlengths 5 110 | path stringlengths 2 233 | content stringlengths 0 1.03M ⌀ | size int32 0 60M ⌀ | license stringclasses 15
values |
|---|---|---|---|---|---|
05cafc71f920690b5fd74d297307bd953d6fdd8f | ColumbusCollaboratory/electron-quick-start | R-Portable-Win/library/survival/doc/survival.R | ### R code from vignette source 'survival.Rnw'
###################################################
### code chunk number 1: survival.Rnw:24-29
###################################################
options(continue=" ", width=60)
options(SweaveHooks=list(fig=function() par(mar=c(4.1, 4.1, .3, 1.1))))
pdf.options(pointsi... | 465 | cc0-1.0 |
e07924bc0b0178727ccc8ff338a114ccd3fa24d0 | robbyjo/assoctool | resources/data/assoctool/rlm.R | # Association analysis tool
# Version: 0.1
# By: Roby Joehanes
#
# Copyright 2016-2017 Roby Joehanes
# This file is distributed under the GNU General Public License version 3.0.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published b... | 2,190 | gpl-3.0 |
3753249177cde5d6fa4f4360176d48cb4ec8a58a | burrm/lolcat | R/unitconversion.grain.to.milligram.R | #' Unit Conversion - Mass/Weight - Grain to Milligram
#'
#' Performs a conversion of weights from grains to milligrams.
#'
#' @param x Vector - Values in units of grains
#'
#' @return x, but converted to milligrams
#'
#' @references
#' NIST. Handbook 133 - Checking the Net Contents of Packaged Goods - Appendix E -... | 640 | mit |
fb6ea9c0f0941e9fd5e75486a78d23bc89bc7875 | RafaelSdeSouza/JAGS_UNC | old_script_tests/R_script/Tdn/fixed_Fortran_vs_C.R | # He3dp analysis
#
# purpose: ARTIFICIAL DATA
#
# - 3 parameters are assumed: Er, gamma_d^2, gamma_n^2 [e1, gin, gout]
#
# - uses the function sfactorTdn_fast(obsx1[i], e1, gin, gout), which
# is a C++ version of a Fortran code that includes Coulomb wave
# function calculations; JAGS has been recompiled with this C... | 3,350 | gpl-3.0 |
fb6ea9c0f0941e9fd5e75486a78d23bc89bc7875 | RafaelSdeSouza/JAGS_UNC | old_script_tests/Tdn copy/fixed_Fortran_vs_C.R | # He3dp analysis
#
# purpose: ARTIFICIAL DATA
#
# - 3 parameters are assumed: Er, gamma_d^2, gamma_n^2 [e1, gin, gout]
#
# - uses the function sfactorTdn_fast(obsx1[i], e1, gin, gout), which
# is a C++ version of a Fortran code that includes Coulomb wave
# function calculations; JAGS has been recompiled with this C... | 3,350 | gpl-3.0 |
a6c17458bb7f6714739b4730087c2f66a22e0f5b | jarad/stat330 | homework/hw11/problem4.R | set.seed(20141210)
n = 20
x = rnorm(n)
y = rnorm(n, x)
write.csv(data.frame(x=x,y=y), file="problem4.csv", row.names=FALSE)
d = read.csv("problem4.csv")
(m = lm(y~x, d))
summary(m) | 182 | gpl-2.0 |
b0254e1239af53044feb3b676c3496c7f810af37 | cran/GeneNT | R/tdclust.R | tdclust <- function(p)
{
C <- cor(t(dat))
diag(C) <- 0
D <- (1-abs(C))^p
diag(D) <- 0
write.table(D, sep = "\t", file = "D.tsv")
d <- as.dist(D)
obj <- hclust(d)
plot(obj, label = FALSE, hang = 0, main = "Traditional clustering", sub = "", xlab = "" )
}
| 291 | gpl-2.0 |
a186f6897170cf221917fc0c87a3768be25790af | Vongo/anna | src/neoServer/disconnect.R | function() {
CONNECT_DIR = "../../neoServer"
PYTHON_CONNECT_PATH = paste(CONNECT_DIR,"/connect.py",sep="")
require(rPython)
python.load(PYTHON_CONNECT_PATH)
ans <- python.call("disconnect")
}
| 197 | gpl-2.0 |
25d1258b1fa259457cd5c7e6c70c6f91233618ec | adimil/PASIFIC | RFprediction.R | require(randomForest) || install.packages("randomForest", repos="http://cran.r-project.org")
# load the random forest
load("rf13-3.RData")
# get out filename
file <- commandArgs(trailingOnly = TRUE)[1]
# load user's data
userdata = read.delim(file, header = FALSE, sep="\t", col.names = c("ID", "seq",
... | 2,110 | mit |
a5a1ae9071dc609243ad42243ff0cdb2dea76f5c | bedatadriven/renjin | test-packages/s4test/tests/test.s4.local3.R | #
# Renjin : JVM-based interpreter for the R language for the statistical analysis
# Copyright © 2010-2019 BeDataDriven Groep B.V. and contributors
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundati... | 1,868 | gpl-2.0 |
c8820d52602db544673050a41f1085fd38def148 | fukatani/rgf_python | R-package/tests/testthat/helper-init.R |
# prefer Python 3 if available [ see: https://github.com/rstudio/reticulate/blob/master/tests/testthat/helper-init.R ]
if (!reticulate::py_available(initialize = FALSE) &&
is.na(Sys.getenv("RETICULATE_PYTHON", unset = NA)))
{
python <- Sys.which("python3")
if (nzchar(python))
reticulate::use_python(python... | 341 | gpl-3.0 |
69d66a74b94ee4cce93ac063483d6c439992cd30 | pnnl/uq | fea-uq/Multi_Chain/BSSANOVA_calibration_Multi.R |
####################################################################################
######################### Sorbent Emulation MCMC ###################################
####################################################################################
###############################
##### Utility Functions ###... | 108,480 | apache-2.0 |
fdb0b0e5828a033a0b6bd8513017492215c340e2 | ColumbusCollaboratory/electron-quick-start | R-Portable-Mac/library/Rcpp/unitTests/runit.Vector.R | #!/usr/bin/env r
# hey emacs, please make this use -*- tab-width: 4 -*-
#
# Copyright (C) 2010 - 2015 Dirk Eddelbuettel and Romain Francois
#
# This file is part of Rcpp.
#
# Rcpp is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the... | 24,913 | cc0-1.0 |
31564654c15a74571b02cc4c63bfd3be90cd86c8 | ISRICWorldSoil/GSIF_tutorials | SoilGrids1km/SoilGrids_examples.R | ## Example of how to aggregate values from SoilGrids to 0--20 cm depths
## prepared by: T. Hengl (tom.hengl@wur.nl)
## requested by: Badza, Taruvinga <taruvinga.badza@wur.nl> and Schut, Tom <tom.schut@wur.nl>
library(rgdal)
library(XML)
library(sp)
## We focus on Rwanda
wg.url <- url("http://gsif.isric.org/lib/exe/f... | 3,461 | gpl-2.0 |
fdb0b0e5828a033a0b6bd8513017492215c340e2 | mycpp/mycpp.github.io | packrat/lib/x86_64-w64-mingw32/3.3.2/Rcpp/unitTests/runit.Vector.R | #!/usr/bin/env r
# hey emacs, please make this use -*- tab-width: 4 -*-
#
# Copyright (C) 2010 - 2015 Dirk Eddelbuettel and Romain Francois
#
# This file is part of Rcpp.
#
# Rcpp is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the... | 24,913 | cc0-1.0 |
31564654c15a74571b02cc4c63bfd3be90cd86c8 | thengl/GSIF_tutorials | SoilGrids1km/SoilGrids_examples.R | ## Example of how to aggregate values from SoilGrids to 0--20 cm depths
## prepared by: T. Hengl (tom.hengl@wur.nl)
## requested by: Badza, Taruvinga <taruvinga.badza@wur.nl> and Schut, Tom <tom.schut@wur.nl>
library(rgdal)
library(XML)
library(sp)
## We focus on Rwanda
wg.url <- url("http://gsif.isric.org/lib/exe/f... | 3,461 | gpl-2.0 |
fdb0b0e5828a033a0b6bd8513017492215c340e2 | UCL-BLIC/legion-buildscripts | cytofpipe/v1.2/Rlibs/Rcpp/unitTests/runit.Vector.R | #!/usr/bin/env r
# hey emacs, please make this use -*- tab-width: 4 -*-
#
# Copyright (C) 2010 - 2015 Dirk Eddelbuettel and Romain Francois
#
# This file is part of Rcpp.
#
# Rcpp is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the... | 24,913 | mit |
171db1f59b51fd500ca51b26bceea4a438d36fba | McIntyre-Lab/papers | dalton_2013/r_programs/wiggleplot_functions.R | #===============================================================================
#
# FILE: wiggleplot_functions.R
#
# USAGE: Called from another R script
#
# DESCRIPTION: A set of functions used to create R based wiggle plots.
#
# AUTHOR: Justin Fear (JMF), jfear@ufl.edu
# INSTITUTION... | 9,003 | lgpl-3.0 |
fdb0b0e5828a033a0b6bd8513017492215c340e2 | nathan-russell/Rcpp | inst/unitTests/runit.Vector.R | #!/usr/bin/env r
# hey emacs, please make this use -*- tab-width: 4 -*-
#
# Copyright (C) 2010 - 2015 Dirk Eddelbuettel and Romain Francois
#
# This file is part of Rcpp.
#
# Rcpp is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the... | 24,913 | gpl-2.0 |
7c5f1bf743c5bb7bb716dbdcf58c5452c760da05 | JoeyBernhardt/OA-meta | R/00_data_prep_growth.R | library(dplyr)
library(tidyr)
library(readr)
library(janitor)
growth <- read_csv("data-raw/growth.csv")
## now onto interactive effects
gro1 <- growth %>%
clean_names()
gro <- gro1 %>%
# # filter(author == "Pansch") %>%
# filter(unit != "dry weight - Tjarno (mg)") %>%
# filter(unit != "size- Kiel (mm... | 3,764 | mit |
fdb0b0e5828a033a0b6bd8513017492215c340e2 | bccpp/bccpp.github.io | packrat/lib/x86_64-w64-mingw32/3.3.2/Rcpp/unitTests/runit.Vector.R | #!/usr/bin/env r
# hey emacs, please make this use -*- tab-width: 4 -*-
#
# Copyright (C) 2010 - 2015 Dirk Eddelbuettel and Romain Francois
#
# This file is part of Rcpp.
#
# Rcpp is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the... | 24,913 | apache-2.0 |
7730a1f0666988b792ea3722147ac90e6b384e7d | ColumbusCollaboratory/electron-quick-start | R-Portable-Win/library/parallel/doc/parallel.R | ### R code from vignette source 'parallel.Rnw'
###################################################
### code chunk number 1: Ecuyer-ex (eval = FALSE)
###################################################
## RNGkind("L'Ecuyer-CMRG")
## set.seed(2002) # something
## M <- 16 ## start M workers
## s <- .Random.seed
... | 11,838 | cc0-1.0 |
ab2d0bcfff02963cd2231b2fedfd9675e8ca0738 | pedlefsen/hiv-founder-id | ReportTimingsAndMultiplicityResults_CreateOtherOutputs.R | source( "ReportTimingsAndMultiplicityResults_safetosource.R" );
#############
# CONFIGURATION
############
timings.include.methods <- c( "glm" ); # c( "glm", "step", "lasso" )
timings.include.training.codes <- c( "RT", "Rt", "rT", "rt" );
ismultiple.show.heatmap = FALSE;
if( ismultiple.show.heatmap ) {
ismultip... | 1,398 | mit |
85dae908a4102ddd393b2d9f5791ed1b19ffcc1e | jrounds/rbokeh | R/bokeh_render_json.R | #' Plot a Bokeh JSON specification
#'
#' Take a path to a Bokeh JSON plot specification file and render it in the browser.
#'
#' @note This is mainly useful for development / debugging purposes for reading in json created from another platform like Python, or to be used with tweaking json output from \code{\link{print_... | 1,276 | mit |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | krlmlr/cxxr | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | jimhester/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | kmillar/rho | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
85dae908a4102ddd393b2d9f5791ed1b19ffcc1e | sinhrks/rbokeh | R/bokeh_render_json.R | #' Plot a Bokeh JSON specification
#'
#' Take a path to a Bokeh JSON plot specification file and render it in the browser.
#'
#' @note This is mainly useful for development / debugging purposes for reading in json created from another platform like Python, or to be used with tweaking json output from \code{\link{print_... | 1,276 | mit |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | cxxr-devel/cxxr | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | Mouseomics/R | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | rho-devel/rho | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | MouseGenomics/R | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
872fc72663d15aff6f4a9b84ce5359e6603780a9 | USGS-R/mda.streams | R/modernize_metab_model.R | #' Update a metabolism model from SB to meet current formatting requirements
#'
#' Known changes since first models include:
#'
#' (1) config was the entire info slot, now is an element named config in a list
#' that is the info slot.
#'
#' (2) config df has more columns now; old columns have not changed names or
#... | 5,309 | cc0-1.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | SurajGupta/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | LeifAndersen/R | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | WelkinGuan/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | mathematicalcoffee/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
678e612982d7125d4a27e085a4718bf5c97d9678 | JoshuaZe/restopicer | restopicer-SCaaS/restopicerRESTful/R/SummaryValueEvaluator.R | topicEntropySummaryEval <- function(z){
-sum(z*log(z))
} | 58 | mit |
872fc72663d15aff6f4a9b84ce5359e6603780a9 | aappling-usgs/mda.streams | R/modernize_metab_model.R | #' Update a metabolism model from SB to meet current formatting requirements
#'
#' Known changes since first models include:
#'
#' (1) config was the entire info slot, now is an element named config in a list
#' that is the info slot.
#'
#' (2) config df has more columns now; old columns have not changed names or
#... | 5,309 | cc0-1.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | andy-thomason/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | abiyug/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | ArunChauhan/cxxr | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | RevolutionAnalytics/RRO | R-src/src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | kmillar/cxxr | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
6820eed730728c6b550a2d7df95e20c1620020cf | annat22/publicationsDataRcode | intMorphDiv_Artio_AmNat/protocol-MdivII.R | ### R Protocol reproducing analyses from
### Haber (2015) "The role of intrinsic constraints in the diversification of ruminants"
############################################################################################
####### PART 1: GENERATING ILMD VCV MATRICES AND SPECIES MEANS from the A_NkmSym dataset
requi... | 29,709 | gpl-2.0 |
63ff31bda725d0fe815c4900ff8e2c15d086c02a | nathan-russell/r-source | src/library/stats/R/reshape.R | # File src/library/stats/R/reshape.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2013 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either... | 10,735 | gpl-2.0 |
85dae908a4102ddd393b2d9f5791ed1b19ffcc1e | paultcochrane/rbokeh | R/bokeh_render_json.R | #' Plot a Bokeh JSON specification
#'
#' Take a path to a Bokeh JSON plot specification file and render it in the browser.
#'
#' @note This is mainly useful for development / debugging purposes for reading in json created from another platform like Python, or to be used with tweaking json output from \code{\link{print_... | 1,276 | mit |
382384924f7b1b67a963a8c849fa6e9cdd958a08 | MLDGR/Kaggle_HomesiteQuoteConversion | R/H2O/H2O_RF_V2.1.R | library(readr)
library(h2o)
MinNumber=148
source("ReduccionVariables_Ismael.R")
h2o.shutdown( promp = F)
localH2O = h2o.init(nthreads = -1)
cat("reading the train and test data\n")
train <- read_csv("train.csv")
test <- read_csv("test.csv")
# There are some NAs in the integer columns so conversion to zero
train[is.... | 2,658 | gpl-3.0 |
85dae908a4102ddd393b2d9f5791ed1b19ffcc1e | timelyportfolio/rBokeh | R/bokeh_render_json.R | #' Plot a Bokeh JSON specification
#'
#' Take a path to a Bokeh JSON plot specification file and render it in the browser.
#'
#' @note This is mainly useful for development / debugging purposes for reading in json created from another platform like Python, or to be used with tweaking json output from \code{\link{print_... | 1,276 | mit |
de744c90fbfb042d4ab6f2b00417f409ae43844b | andrewdefries/andrewdefries.github.io | FDA_Pesticide_Glossary/6-methoxy-2-pyridyl(.R | library("knitr")
library("rgl")
#knit("6-methoxy-2-pyridyl(.Rmd")
#markdownToHTML('6-methoxy-2-pyridyl(.md', '6-methoxy-2-pyridyl(.html', options=c("use_xhml"))
#system("pandoc -s 6-methoxy-2-pyridyl(.html -o 6-methoxy-2-pyridyl(.pdf")
knit2html('6-methoxy-2-pyridyl(.Rmd')
| 276 | mit |
810c56cd194122557cd77dec3e55b58ecf50f39a | fredfeng/MorpheusData | R15.R | # making table data sets
library(dplyr)
library(tidyr)
library(MorpheusData)
#############benchmark 1
#dat <- data.frame(Timepoint=c(0L, 7L, 14L), Group1=c(50L, 60L, 66L),
# Error1_Group1=c(3, 4, 6), Group2=c(30L, 60L, 90L),
# Error2_Group1=c(10L, 14L, 16L))
dat <- data.frame(Timepo... | 1,482 | cc0-1.0 |
de9f1d8192b4f635bc4e2ff2acb498b00a9abcb1 | burrm/lolcat | R/unitconversion.degree.fahrenheit.to.degree.celsius.R | #' Unit Conversion - Temperature - Fahrenheit to Celsius
#'
#' Performs a conversion of temperature from Fahrenheit to Celsius.
#'
#' @param x Vector - Values in units of degrees Fahrenheit.
#'
#' @return x, but converted to degrees Celsius
#'
#' @references
#' NIST. Handbook 133 - Checking the Net Contents of Pack... | 722 | mit |
859d1663b7cc30399d45aa9f69dd92a9379c163f | nevillejackson/dmm | dmm/R/unfactor.R | unfactor <-
function(x){
# unfactor() - convert vector x from factor to numeric
# non numeric values will coerce to NA
if(!is.factor(x)){
stop("unfactor: argument x must be a factor:\n")
}
y <- as.numeric(as.character(x))
return(y)
}
| 259 | gpl-3.0 |
aea568351a22ea37fef02b824b64f0fe665300ca | richarddmorey/jpower | jpower/R/ttestps.b.R |
ttestPSClass <- if (requireNamespace('jmvcore')) R6::R6Class(
"ttestPSClass",
inherit = ttestPSBase,
private = list(
#### Member variables ----
probs_es = NULL,
type = "paired",
#### Init + run functions ----
.init = function() {
private$.initPowerTab()... | 28,127 | gpl-3.0 |
3776d85c30e21f3526fbb62906b3364d4f163fb3 | aalbrechtsen/relate | R/ld.snp3.R | ld.snp3 <- function(snpdata, back=100){
nams <- colnames(snpdata)
snp<-dim(snpdata)[2]
d<-as.integer(snpdata)
d[is.na(d)]<-0
d<-as.integer(d)
snpdata<-matrix(d,ncol=snp)
if(is.null(nams))
colnames(snpdata)<-paste("snp",1:dim(snpdata)[2],sep="")
else
colnames(snpdata) <- nams
ans <- .Call("s... | 377 | gpl-3.0 |
9c076e405cc99513140bbb7db98d6828c35d9174 | chavli/Coursera-ML-DataScience | RProgramming/Week3/Assignment2/cachematrix.R | ##
## 2014-08-22
## Two matrix functions that demonstrate the value caching functionality of R. The first
## function creates "cachedMatrix" and the second function returns the inverse of the
## cached matrix.
##
## Creates a cached matrix given a standard R matrix. the cached matrix keeps track
## of its inverse val... | 1,518 | gpl-2.0 |
b7f1549ec1d6d97392eeae46cedad585a7845dbc | geo047/WMAM | MyPackage/ShinyApp/thisworks.R | ## Shiny GUI for Eagle
## Developer: Andrew W. George
## Version: 1.2.0
rootdir <- c('Home' = Sys.getenv("HOME"))
if(.Platform$OS.type == "windows") {
rootdir <- c('Home' = paste0(rootdir, "\\..\\"))
}
##---------------------------
## Analyse Page Functions
##~~~~~~~~~~~~~~~~~~~~~~~~~~
bannerAnal <- func... | 85,756 | gpl-2.0 |
e304697dbee9d89720175d934ebf904b065cceb2 | landmarkacoustics/SoundPoints-R | R/collect.absolute.energy.R | collect.absolute.energy <-
function(spk, desired.sum){
total <- max(spk);
N <- length(spk);
lo <- hi <- match(total, spk)[1];
while(total < desired.sum){
action.case <- switch(1 + 2 * (is.na(lo) || lo < 2 || spk[lo - 1] < 0)
+ (is.na(hi) || is.na(spk[hi+1]) || ... | 891 | gpl-2.0 |
728190f4e25cac350b60af4f039173377b9fcb1b | hpssjellis/forth-tensorflow | r-examples/r04.R | demo(scoping) | 15 | mit |
728190f4e25cac350b60af4f039173377b9fcb1b | hpssjellis/tensorflow-udacity-deep-learning | r-examples/r04.R | demo(scoping) | 15 | mit |
f9979042e322b71f6cc9c85d718d2c82063dad57 | johngarvin/R-2.1.1rcc | src/library/graphics/R/polygon.R | ### polyhatch - a pure R implementation of polygon hatching
### Copyright (C) 2001 by Kevin Buhr <buhr@stat.wisc.edu>
### Provided to the R project for release under GPL.
### Original nice clean structure destroyed by Ross Ihaka
polygon <-
function(x, y = NULL, density = NULL, angle = 45,
border = NULL, ... | 9,142 | gpl-2.0 |
af0464f003c78934b81022cc6f40a3f12e12bf25 | streampulse/model | ancillary/pipeline/pipeline_gapfill.R | library(StreamPULSE)
library(dplyr)
#prepare for debug gapfill
site_code = 'AZ_OC'; start_date = '2018-06-01'; end_date = '2018-07-01'
sp_data = request_data(sitecode=site_code,
startdate=start_date, enddate=end_date)
sp_data_prepped = prep_metabolism(d=sp_data, type='bayes',
model='streamMetabolizer')
sp_data... | 3,381 | mit |
ff6f1ca8fe603fb4b8938e9547a0159e52d0cbbc | yanyachen/MLmetrics | R/Count.R | #' @title Poisson Log loss
#'
#' @description
#' Compute the log loss/cross-entropy loss.
#'
#' @param y_pred Predicted labels vector, as returned by a model
#' @param y_true Ground truth (correct) labels vector
#' @return Log loss/Cross-Entropy Loss
#' @examples
#' d_AD <- data.frame(treatment = gl(3,3), outcome = gl(... | 1,893 | gpl-2.0 |
66f36ff6987b6ca2a2faa6512deff6cf776712b1 | johngarvin/R-2.1.1rcc | src/library/utils/R/data.R | data <-
function(..., list = character(0), package = NULL, lib.loc = NULL,
verbose = getOption("verbose"), envir = .GlobalEnv)
{
fileExt <- function(x) sub(".*\\.", "", x)
names <- c(as.character(substitute(list(...))[-1]), list)
## Find the directories of the given packages and maybe the working... | 6,976 | gpl-2.0 |
f98ffa8181429137da40fa0858cc29b1e2b0b0be | jhmigueles/GGIR | R/chartime2iso8601.R | chartime2iso8601 = function(x,tz){
POStime = as.POSIXlt(as.numeric(as.POSIXlt(x,tz)),origin="1970-1-1",tz)
POStimeISO = strftime(POStime,format="%Y-%m-%dT%H:%M:%S%z")
return(POStimeISO)
} | 195 | lgpl-3.0 |
f98ffa8181429137da40fa0858cc29b1e2b0b0be | fjbaron/GGIR | R/chartime2iso8601.R | chartime2iso8601 = function(x,tz){
POStime = as.POSIXlt(as.numeric(as.POSIXlt(x,tz)),origin="1970-1-1",tz)
POStimeISO = strftime(POStime,format="%Y-%m-%dT%H:%M:%S%z")
return(POStimeISO)
} | 195 | lgpl-3.0 |
f98ffa8181429137da40fa0858cc29b1e2b0b0be | ucl-cls/mcs-acc | R/chartime2iso8601.R | chartime2iso8601 = function(x,tz){
POStime = as.POSIXlt(as.numeric(as.POSIXlt(x,tz)),origin="1970-1-1",tz)
POStimeISO = strftime(POStime,format="%Y-%m-%dT%H:%M:%S%z")
return(POStimeISO)
} | 195 | lgpl-3.0 |
000e47ba00863fa12cec27e8aa1fdaecb1e6c58c | philliplab/hdsResistanceModel | R/scenario_treatment_ui.R | #' Constructs the treatment part of the ui from a scenario
#'
#' @param scenario The scenario to produce the ui from
#' @export
treatment_ui_from_scenario <- function(scenario){
treatment_ui <- NULL
i <- 0
for (treatment in scenario$treatments){
i <- i + 1
treatment_ui <- c(treatment_ui,
numericIn... | 782 | gpl-2.0 |
71d4b98a9d1dd371a1cd132377e420ea9200a1a4 | thuehn/RegMon | analysis_scripts/plot_traces/RegMon-validation.R | #notwendige Bibliotheken laden
require(ggplot2)
require(plyr)
library(reshape2)
#Arbeitspfad setzen
setwd("/Users/bluse/Desktop/trace_rigaer11.07.12/RegMon_validation/test-RegMon-sampling-accuracy-ath5k-Asus/datamining") ... | 5,704 | gpl-2.0 |
d65fdefad5dab7cb02f6f76325877fec74f28ae5 | kbrannan/ODEQ-Bacteria-Model-R | R_scripts/sub-models/Wildlife-Elk/Wildlife_Elk_Sub_Model_calculation_check-subwtsd-10.R | ## step bt step calculation check for wildlife_elk_sub_model using input from
## wildlifeelk10.txt file
chr.wildlife.elk.dir <- "M:/Models/Bacteria/HSPF/ODEQ-Bacteria-Model-R/R_scripts/sub-models/wildlife-elk"
chr.input <- "wildlifeelk10.txt"
source(paste0(chr.wildlife.elk.dir,"/Wildlife_Elk_Sub_Model.R"))
df.output <-... | 41,641 | gpl-2.0 |
f774c5bdd279eecc3589da04fe7efd2ae589042e | aappling-usgs/mda.streams | R/post_styx_site.R | #' Create a styx site and post a list of timeseries files to it
#'
#' This function is easiest to use when applied to the output of
#' \code{\link{stage_styx_site}}.
#'
#' @param file_list a list of files as given by stage_styx_site. The site name
#' will be determined from the first item (a metadata vector) in t... | 1,621 | cc0-1.0 |
74e34c198b56dc812f02c32319ca8c62383df4e6 | gatoravi/GenVisR | R/comparemysamples.R | #' Compare the identities of multiple samples
#'
#' Given the bam file path, count the number of reads at the 24 SNP locations
#' @name comparemysamples
#' @param x data frame with column names sample_name, bamfile
#' @param genome Object of class BSgenome specifying the genome
#' @return grid object
#' @export
comp... | 730 | cc0-1.0 |
f774c5bdd279eecc3589da04fe7efd2ae589042e | jread-usgs/mda.streams | R/post_styx_site.R | #' Create a styx site and post a list of timeseries files to it
#'
#' This function is easiest to use when applied to the output of
#' \code{\link{stage_styx_site}}.
#'
#' @param file_list a list of files as given by stage_styx_site. The site name
#' will be determined from the first item (a metadata vector) in t... | 1,621 | cc0-1.0 |
ef46634b10c63d109221e47ada8ee3b249142d4f | joseflaviojr/transcriptograma | Qualidade.R |
#
# Copyright (C) 2016 José Flávio de Souza Dias Júnior
#
# This file is part of Transcriptograma - <http://www.joseflavio.com/transcriptograma/>.
#
# Transcriptograma is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Fr... | 13,935 | lgpl-3.0 |
f774c5bdd279eecc3589da04fe7efd2ae589042e | USGS-R/mda.streams | R/post_styx_site.R | #' Create a styx site and post a list of timeseries files to it
#'
#' This function is easiest to use when applied to the output of
#' \code{\link{stage_styx_site}}.
#'
#' @param file_list a list of files as given by stage_styx_site. The site name
#' will be determined from the first item (a metadata vector) in t... | 1,621 | cc0-1.0 |
74e34c198b56dc812f02c32319ca8c62383df4e6 | hjanime/GenVisR | R/comparemysamples.R | #' Compare the identities of multiple samples
#'
#' Given the bam file path, count the number of reads at the 24 SNP locations
#' @name comparemysamples
#' @param x data frame with column names sample_name, bamfile
#' @param genome Object of class BSgenome specifying the genome
#' @return grid object
#' @export
comp... | 730 | cc0-1.0 |
e8d040ee5e86c1a5797220ccca1f405ca4bfb9f4 | maddieka/schev | pulaski/complete_sch_boundaries.R | # school boundary shapefile is missing several school districts...
# 1/17/2018
setwd("~/Google Drive/SCHEV (Peter Blake - Wendy Kang)")
library(tmaptools)
library(stringr)
library(sp)
library(ggplot2)
library(plyr)
library(dplyr)
library(rgeos)
library("rgdal")
boundaries <- read_shape("Data/School Attendance Bounda... | 16,514 | mit |
765fd242e1b44af9f93cccc0023fd635d77e617f | mcnis003/image-analysis | old_versions/seed_color_r_v06.R | #begin redme
#this r script is intended to collect, manage,and analyze the data produced by the imagej script
#seed_color_imagej_v9, it produces an output file that provides a description of each seed analyzed
#in a single table
#the sections of this script are:
#1. set working directory and load libraries
#2. create... | 4,342 | mit |
1d4e5e01620ea51d77d1c7b7a94f6788e1024675 | ecomets/saemix | keepsaemix/R/zzz.R | .onAttach <-function (lib, pkg) {
packageStartupMessage(" Loading library saemix, version 2.0, September 2015\n please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr\n")
}
| 206 | gpl-2.0 |
3a1a130981e9cdbab8cc8c239628d064e22aaa47 | martinnj/CompanyProject2015 | src/Report-FormulaComparison.R | #install.packages('randomForest'); install.packages('party'); install.packages('rattle'); install.packages('rpart.plot'); install.packages('RColorBrewer'); install.packages('curl'); library(devtools); install_github('krlmlr/kimisc'); install.packages('foreach');
library(rattle)
library(rpart.plot)
library(RColorBr... | 1,677 | mit |
289b82f5e674dd197e7aa8e40366c4ee6eecc160 | nhejazi/biotmle | tests/testthat.R | library(testthat)
library(biotmle)
test_check("biotmle")
| 58 | mit |
ead2b48ce7bc02d7a8dfd07385b5f8aa5d23c41e | ipmbook/first-edition | Rcode/c9/old_code/Monocarp Variance Dynamics new.R | ## ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
## Use the Monocarp IBM with individual variation in flowering intercept to illustrate evolutionary dynamics
## ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm... | 8,666 | gpl-2.0 |
2828648292b778a6ec9bc6364925f59974fb75a6 | gisma/perfectPeak | R/makePeak.R | #'@name makePeak
#'@title Wrapper function that perform some morphometric Digital Elevation Model
#'(DEM) analysis to generate a set of morphometric and in realreliable peaks
#'
#'@description
#' Currently two different approaches are available. First a simple approach using a filtered
#' DEM that is then analysed ... | 14,894 | apache-2.0 |
fd360d350bf4783f0c7e6d6f830471baf577db70 | zhmz90/Daily | learn/R/Unit2/Unit2_Moneyball.R | # VIDEO 2
# Read in data
baseball = read.csv("baseball.csv")
str(baseball)
# Subset to only include moneyball years
moneyball = subset(baseball, Year < 2002)
str(moneyball)
# Compute Run Difference
moneyball$RD = moneyball$RS - moneyball$RA
str(moneyball)
# Scatterplot to check for linear relationship
plot(moneybal... | 889 | mit |
305cb3b1cad1448a2e76462f963c380ccb4b327f | sammorris81/spatial-skew-t | code/analysis/ozone/US-all/us-all-33.R | source("./package_load.R", chdir = TRUE)
setting <- 33
method <- "t"
nknots <- 6
keep.knots <- FALSE
threshold <- 0
tau.init <- 0.05
thresh.quant <- FALSE
skew <- TRUE
outputfile <- paste("results/us-all-", setting, ".RData", sep="")
start <- proc.time()
fit <- vector(mode="list", length=2)
for(val in 1:2){
set.s... | 1,378 | gpl-2.0 |
84ef3ef0132597b8a13fd80f324e195e570b733a | wangxj03/dynsurv | R/misc.R | ##
## R package dynsurv by Wenjie Wang, Ming-Hui Chen, Xiaojing Wang, and Jun Yan
## Copyright (C) 2011-2020
##
## This file is part of the R package dynsurv.
##
## The R package dynsurv is free software: You can redistribute it and/or
## modify it under the terms of the GNU General Public License as published by
## th... | 934 | gpl-3.0 |
16a53c706c895a354a242ff2eaee997742551607 | tjmahr/EdPsych964 | lectures/HLM09_proximity_LDA_nlme.R | #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#:::::::::::::::: HLM longitudinal data analysis using nlme ::::::::::::::::
#:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
library(nlme) # instead of lme4 to use correlation= & weights= in lme() and to fit "uns... | 15,765 | gpl-2.0 |
16e5e60f785137ada4be0c5f10185c909819bc68 | privefl/mySO | field-RC-callSuper.R | parent <- setRefClass("parent",
fields = list(
test = function() 2
))
child <- setRefClass("child",
contains = "parent",
fields = list(
test = function() .self$export("parent")$test + 1
... | 603 | gpl-3.0 |
84ef3ef0132597b8a13fd80f324e195e570b733a | cran/dynsurv | R/misc.R | ##
## R package dynsurv by Wenjie Wang, Ming-Hui Chen, Xiaojing Wang, and Jun Yan
## Copyright (C) 2011-2020
##
## This file is part of the R package dynsurv.
##
## The R package dynsurv is free software: You can redistribute it and/or
## modify it under the terms of the GNU General Public License as published by
## th... | 934 | gpl-3.0 |
344be84720e9428393d365b3c56f7e783050559b | goujonpa/SY19TP7 | display.R | # Paul GOUJON & Jo COLINA
# UTC - SY19 - TP7
# Display functions
disp = function(m, r, c, t="Image display") {
I = matrix(m, r, c)
I1 = apply(I,1,rev)
image(t(I1), col=gray(0:255/255), main=t)
} | 208 | mit |
9e8997b5a4e4f8962d8635a8ff91cf96849b2b12 | cxxr-devel/cxxr-svn-mirror | src/library/Recommended/MASS/R/lm.ridge.R | # file MASS/R/lm.ridge.R
# copyright (C) 1994-2006 W. N. Venables and B. D. Ripley
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 or 3 of the License
# (at your option).
... | 3,009 | gpl-2.0 |
c8995a43cabca4cc7e14e2872bd44cc47ccb81d8 | reactorlabs/gnur | src/library/base/R/library.R | # File src/library/base/R/library.R
# Part of the R package, https://www.R-project.org
#
# Copyright (C) 1995-2018 The R Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either ... | 41,129 | gpl-2.0 |
d98041908eb4fc344865d3dd5837141e82528f4b | dmlc/xgboost | R-package/R/xgb.load.R | #' Load xgboost model from binary file
#'
#' Load xgboost model from the binary model file.
#'
#' @param modelfile the name of the binary input file.
#'
#' @details
#' The input file is expected to contain a model saved in an xgboost model format
#' using either \code{\link{xgb.save}} or \code{\link{cb.save.model}} in ... | 1,871 | apache-2.0 |
4636f842ce3c27bed2fcdb791ebafb844d76fe65 | chartgerink/statcheckTEMP | R/PDFimport.R | # Inner function to read pdf:
getPDF <- function(x)
{
txtfiles <- character(length(x))
for (i in 1:length(x))
{
system(paste('pdftotext -q -enc "ASCII7" "',x[i],'"',sep=""))
if (file.exists(gsub("\\.pdf","\\.txt",x[i])))
{
#txtfiles[i] <- paste(scan(gsub(".pdf",".txt",x[i]),what="character",sep=... | 6,666 | gpl-2.0 |
b39649ad9b6d06ab0a774b257dfda8fd7f594c89 | sauloal/cnidaria | scripts/R/jaccard.R | calc_dist <- function(x,y,cx,cy,v,dist_method) {
j <- NA
if ( dist_method == "jaccard" ) {
j <- jaccard( x,y,cx,cy,v )
}
else if ( dist_method == "cosine" ) {
j <- cosine( x,y,cx,cy,v )
}
else if ( dist_method == "tanimoto" ) {
j <- tanimoto( x,y,cx,cy,v )
}
else if ( ... | 1,552 | mit |
2eef842184fbf6d45945108cce084559ba05d19a | SpaceVim/SpaceVim | bundle/nvim-treesitter/tests/indent/r/pipe.R | mtcars |>
head(
n = 6L
) |>
subset(
cyl > 3
)
| 62 | gpl-3.0 |
e2a70923e1b302d61da6c9303f716d6cf9169aea | llattes/datasciencecoursera | GettingAndCleaning/Week4/quiz4.R | setwd("~/DataScience/datasciencecoursera/GettingAndCleaning/Week4")
?Sys.timezone
# Question 1 - Quiz 4
download.file(url = "https://d396qusza40orc.cloudfront.net/getdata%2Fdata%2Fss06hid.csv", destfile = "q1.csv", method = "curl")
read.csv(file = "q1.csv")
q1df <- read.csv(file = "q1.csv")
View(`q1df`)
names(q1df)
spl... | 2,352 | mit |
e587aadbb3f2cfa3424b7f813b54971502a86eed | cran/rgl | R/axes.R | # This internal function returns a list with the following components:
# xlim, ylim, zlim: the bounding box expanded so no coordinate has zero or negative extent
# strut: a boolean indicating whether an expansion was done above
# x, y, z: the box above expanded by a factor of expand
.getRanges <- function(expand = ... | 9,030 | gpl-2.0 |
c5a4e106d9e861bbdcaac1588e56c33d567468e3 | steve-the-bayesian/BOOM | Interfaces/R/bsts/R/date.functions.R | # Copyright 2011 Google LLC. All Rights Reserved.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This li... | 17,724 | lgpl-2.1 |
607c18b0959b69d66c3177fbadfd1ec669b91911 | tpetzoldt/growthrates | inst/doc/examples/example_easylinear.R | ## =============================================================================
## Determine growth rates with a heuristic linear method, similar to
## the method of Hall et al. 2013, doi:10.1093/molbev/mst197
##
## Author: Thomas Petzoldt, TU Dresden
## License: GPL >= 2, https://www.gnu.org/licenses/
## Ple... | 1,191 | gpl-2.0 |
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