id
stringlengths
40
40
repo_name
stringlengths
5
110
path
stringlengths
2
233
content
stringlengths
0
1.03M
size
int32
0
60M
license
stringclasses
15 values
487659c7cd21b61fd28f2f9b7a0874e662f14ca3
CancerInSilico/CancerInSilico
R/class-OffLatticeModel.R
#' @include class-CellModel.R NULL library(methods) ################ Class Definition ################ #' @title OffLatticeModel #' @description General description of an off-lattice cell-based model. #' not quite a full implementation, but contains much of the neccesary #' structure for models of this type #' #' @s...
12,312
gpl-3.0
687073ffd78a13a798d6fb57794917aa4bb64d9c
naokazumizuta/RecSys2013YelpBusinessRatingPrediction
r/init.R
# initial settings root <- "C:/Users/nao/Documents/GitHub/RecSys2013YelpBusinessRatingPrediction" folder <- list() folder_name <- c( "data", "docs", "log", "py", "r", "raw", "rdata", "submit") for(name in folder_name) { folder[[name]] <- file.path(root, name) dir.create(folder[...
434
mit
ba490b7f4c43b7f6faccdfb56b4283561b3c4fbf
duhi23/CouchDB
classify_emotion.R
classify_emotion <- function(textColumns,algorithm="bayes",prior=1.0,verbose=FALSE,...) { matrix <- create_matrix(textColumns,...) lexicon <- read.csv(system.file("data/emotions.csv.gz",package="sentiment"),header=FALSE) counts <- list(anger=length(which(lexicon[,2]=="anger")),disgust=length(wh...
2,787
gpl-3.0
91fe2aab3520f8a0f17f86fdc24cc250f82c1742
kakaba2009/MachineLearning
r/learn/times/stft.R
library(e1071) library(xts) source('./mylib/mcalc.R') source('./mylib/mtool.R') options(max.print=5.5E5) df <- loadSymbol('JPY=X') df <- df$Close ts <- as.ts(df) x <- tail(ts, n=1000) y <- stft(x, win=6, inc=1, coef=64) plot(y)
231
apache-2.0
1fd36dbce6955314812dfa1ddc1934bb59eebafc
rstudio/reticulate
tests/testthat/resources/venv-activate.R
args <- commandArgs(TRUE) venv <- args[[1]] Sys.unsetenv("RETICULATE_PYTHON") Sys.unsetenv("RETICULATE_PYTHON_ENV") reticulate::use_virtualenv(venv, required = TRUE) sys <- reticulate::import("sys") writeLines(sys$path)
223
apache-2.0
92e8032a1f2328d0d10c16745c567570796222f6
kapsitis/ddgatve-stat
nms-reports/topResults.R
# listInit <- function(tensBySch, tensByLang, tensByMun, tensByGend, # sch, lang, mun, gend) { # if (!sch %in% names(tensBySch)) { # tensBySch[[sch]] <- 0 # } # if (!lang %in% names(tensByLang)) { # tensByLang[[lang]] <- 0 # } # if (!mun %in% names(tensByMun)) { # ...
3,115
apache-2.0
1fd36dbce6955314812dfa1ddc1934bb59eebafc
terrytangyuan/reticulate
tests/testthat/resources/venv-activate.R
args <- commandArgs(TRUE) venv <- args[[1]] Sys.unsetenv("RETICULATE_PYTHON") Sys.unsetenv("RETICULATE_PYTHON_ENV") reticulate::use_virtualenv(venv, required = TRUE) sys <- reticulate::import("sys") writeLines(sys$path)
223
apache-2.0
b36a145f0df82bfc348c3e54046568f16d0e000c
arcolombo/sleuthData
R/zzz.R
cat("Results from GSE37704 are available in", system.file("extdata", "results", package="sleuthData"))
108
artistic-2.0
cb79b016a986ebbc62d38bad2d5781681d177182
rstudio/reticulate
tests/testthat/test-python-objects.R
context("objects") test_that("the length of a Python object can be computed", { skip_if_no_python() m <- py_eval("[1, 2, 3]", convert = FALSE) expect_equal(length(m), 3L) x <- py_eval("None", convert = FALSE) expect_identical(length(x), 0L) expect_identical(py_bool(x), FALSE) expect_error(py_len(x), "'...
1,236
apache-2.0
5430aa0337d5f5f0393413efc8a523835afcc6d3
MulletLab/leafangle_supplement
h2_and_qtl/rqtl_mqm_scripts/scantwo_perm_R07018xR07020.R
################################################################################ # Calculate Penalties for curated Multiple QTL Mapping in R\qtl # # Written by Sandra Truong 10/14/2014 # # Much of the code originates from http://www.rqtl.org/tutorials ...
3,398
gpl-2.0
1c89d8e03f966a4b6e584e30de574532513b7b1c
zlskidmore/GenVisR
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
7787765a9d1cccd54b1f2b1f52e4d8da778dcae5
richelbilderbeek/R
old_notes/Phylogenies/get_test_fasta_filename.R
get_test_fasta_filename <- function() { fasta_filename <- "convert_alignment_to_fasta.fasta" #fasta_filename <- "convert_fasta_file_to_sequences.fasta" if (file.exists(fasta_filename)) { return (fasta_filename) } fasta_filename <- paste("~/GitHubs/R/Phylogenies/",fasta_filename,sep="") if (file.exists(fasta_...
451
gpl-3.0
a8fac03dddeb188cf33d668bfa70d4a3aeb36cc8
fernandojunior/online-players-behavior
src/R/evaluation_measures.R
# Functions to evaluate a predictive model # http://journals.plos.org/plosone/article/figure/image?size=large&id=info:doi/10.1371/journal.pone.0118432.t001 # targets # outcomes 0 1 # 0 TN FN # 1 FP TP confusion_matrix = function (outcomes, targets) { return(table(outcomes, targets)) } ...
2,712
mit
1c89d8e03f966a4b6e584e30de574532513b7b1c
jkunisak/GenVisR
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
cb6dfce429bc9ced5678b9dd40ecb7e791747e2e
wch/r-source
src/library/datasets/data/Harman74.cor.R
"Harman74.cor" <- structure(list(cov = structure(c(1, 0.318, 0.403, 0.468, 0.321, 0.335, 0.304, 0.332, 0.326, 0.116, 0.308, 0.314, 0.489, 0.125, 0.238, 0.414, 0.176, 0.368, 0.27, 0.365, 0.369, 0.413, 0.474, 0.282, 0.318, 1, 0.317, 0.23, 0.285, 0.234, 0.157, 0.157, 0.195, 0.057, 0.15, 0.145, 0.239, 0.103, 0.131, 0.272, ...
5,023
gpl-2.0
32b5814be04ef6ed07b5b884809385407005a98f
jyfeather/LASSO-BN
R/auc_real.R
rm(list = ls()) require("genlasso") # Lasso solver require("ROCR") # ROC require("Matrix") set.seed(2015) kIteration <- 200 node.num <- 22 sig.set <- c(0.1, 0.3, 0.5, 0.7, 1, 1.5) # Mean shift magnitude var.df <- 1 # 1, 2, 3, 4, 5 guessed amount of mean shift vars ns <- 1 # 1, 2, 5, 10 load("./dat/real/weig...
2,364
mit
5430aa0337d5f5f0393413efc8a523835afcc6d3
thkhavi/leafangle_supplement
h2_and_qtl/rqtl_mqm_scripts/scantwo_perm_R07018xR07020.R
################################################################################ # Calculate Penalties for curated Multiple QTL Mapping in R\qtl # # Written by Sandra Truong 10/14/2014 # # Much of the code originates from http://www.rqtl.org/tutorials ...
3,398
gpl-2.0
1c89d8e03f966a4b6e584e30de574532513b7b1c
zskidmor/GenVisR
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
1c89d8e03f966a4b6e584e30de574532513b7b1c
zskidmor/GGgenome
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
1c89d8e03f966a4b6e584e30de574532513b7b1c
Alanocallaghan/GenVisR
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
1c89d8e03f966a4b6e584e30de574532513b7b1c
ahwagner/GenVisR
R/covBars_qual.R
#' Construct coverage cohort plot #' #' given a matrix construct a plot to display coverage as percentage bars for a #' group of samples #' @name covBars_qual #' @param x object of class matrix containing rows for the coverage and columns #' the sample names #' @return a list of data frame and color vector covBars_qua...
1,621
cc0-1.0
7192f17c13810bf0cad9a5333c8338350063c9f2
athyuttamre/accessible-facebook-ui
public/conversejs/components/otr/test/plot.R
#!/usr/bin/env Rscript # most from ry # https://github.com/joyent/node/blob/master/benchmark/plot.R library(ggplot2) hist_png_filename <- "hist.png" png(filename = hist_png_filename, width = 480, height = 380, units = "px") da = read.csv( "./data.csv", sep="\t", header=F, col.names = c("time") ) qplot( ...
448
mit
aa969a55ec80e4b042ac0eab07551f6b56e46a0d
alonzi/fundamentals
coding_tips/R/pipes.R
# stolen from Hadley Wickam # Packages in the tidyverse load %>% for you automatically, so you don’t usually load magrittr explicitly. f(x,y) # is pretty easy to read f(g(x,y),z) # is a little harder to read # R let's you pipe objects into arguments of functions with %>% f(g(x,y),z) # becomes x %>% g(y) %>% f...
899
gpl-2.0
5c3530738d96bd0fde56a906a9211259bbd5236f
JackyCode/Data_Science
KMeans/self_kmeans.R
############################################################ # self_kmeans.R: # ------------------- # tells how to use custom function to achieve the k-means # ############################################################ # license: # -------- # Copyright (c) 2014 JackyCode # Distributed under the [MIT License][MIT]. # ...
1,741
mit
1aa19e527012b03d87257233e0b7e0f058ab8b8f
Zhiwu-Zhang-Lab/GAPIT
GAPIT.Create.Indicator.R
`GAPIT.Create.Indicator` <- function(xs, SNP.impute = "Major" ){ #Object: To esimate variance component by using EMMA algorithm and perform GWAS with P3D/EMMAx #Output: ps, REMLs, stats, dfs, vgs, ves, BLUP, BLUP_Plus_Mean, PEV #Authors: Alex Lipka and Zhiwu Zhang # Last update: April 30, 2012 ########################...
1,859
gpl-2.0
3677ee16c4611fc4e61535857c8b36459c80167a
miceli/BMR
tests/dsge/gensys/nkm_dsgevar.R
# rm(list=ls()) library(BMR) source("nkm_model.R") # data(BMRVARData) dsgedata <- USMacroData[24:211,-c(1,3)] dsgedata <- as.matrix(dsgedata) for(i in 1:2){ dsgedata[,i] <- dsgedata[,i] - mean(dsgedata[,i]) } # obj <- new(dsgevar_gensys) obj$set_model_fn(nkm_model_simple) x <- c(1) obj$eval_model(x) # l...
1,423
gpl-2.0
9f4cc88e4218578049e3eb7813be4a5aa1cffe75
lulab/PI
Rscript/machine_learning/plot_result.R
library('e1071') require(randomForest) require(RColorBrewer) input=read.csv("bins.training-5classes.sampled.csv") model_file="5classes.rf.model" dataall=input[,c(8:12,15:16,18:19)] classesall=subset(input,select=X1.Annotation) #Generate training and testing sets nall=nrow(input) ntrain=2*floor(nall/3) datatrain <- dat...
675
gpl-2.0
3677ee16c4611fc4e61535857c8b36459c80167a
kthohr/BMR
tests/dsge/gensys/nkm_dsgevar.R
# rm(list=ls()) library(BMR) source("nkm_model.R") # data(BMRVARData) dsgedata <- USMacroData[24:211,-c(1,3)] dsgedata <- as.matrix(dsgedata) for(i in 1:2){ dsgedata[,i] <- dsgedata[,i] - mean(dsgedata[,i]) } # obj <- new(dsgevar_gensys) obj$set_model_fn(nkm_model_simple) x <- c(1) obj$eval_model(x) # l...
1,423
gpl-2.0
3d93551eb71de137b7cd59515f53c669cdb0b83f
glycerine/bigbird
r-3.0.2/src/gnuwin32/installer/JRins.R
# File src/gnuwin32/installer/JRins.R # # Part of the R package, http://www.R-project.org # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your o...
4,565
bsd-2-clause
f580b38b5bef5d2c920c8abbe61b73e8a8e09dda
Prateek2690/APP_
highcharter/ui-orig.R
#library("shiny") #library("shinydashboard") library("highcharter") #library("dplyr") #library("viridisLite") library("markdown") library("quantmod") library("tidyr") #library("ggplot2") library("treemap") library("forecast") library("DT") #rm(list = ls()) dashboardPage( skin = "black", dashboardHe...
2,782
mit
3d93551eb71de137b7cd59515f53c669cdb0b83f
lajus/customr
src/gnuwin32/installer/JRins.R
# File src/gnuwin32/installer/JRins.R # # Part of the R package, http://www.R-project.org # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your o...
4,565
gpl-2.0
f580b38b5bef5d2c920c8abbe61b73e8a8e09dda
Prateek2690/APP_
highcharter/highcharter/ui-orig.R
#library("shiny") #library("shinydashboard") library("highcharter") #library("dplyr") #library("viridisLite") library("markdown") library("quantmod") library("tidyr") #library("ggplot2") library("treemap") library("forecast") library("DT") #rm(list = ls()) dashboardPage( skin = "black", dashboardHe...
2,782
mit
3d93551eb71de137b7cd59515f53c669cdb0b83f
cxxr-devel/cxxr-svn-mirror
src/gnuwin32/installer/JRins.R
# File src/gnuwin32/installer/JRins.R # # Part of the R package, http://www.R-project.org # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your o...
4,565
gpl-2.0
3a12b5e5e12ccbd88942655110ed42ad854f3a08
thomasvangurp/epiGBS
RnBeads/RnBeads/R/assemblies.R
######################################################################################################################## ## annotations.R ## created: 2012-08-16 ## creator: Yassen Assenov ## --------------------------------------------------------------------------------------------------------------------- ## Collecti...
7,310
mit
051cf708912da9d7c4b23cef72c206df58bae18e
mul118/shinyMCE
R/shinyMCE.R
#' tinyMCE editor element #' #' Display a tinyMCE editor within an application page. #' @param inputId id associated with the editor #' @param content editor content. May be a string or HTML embedded in an \code{\link{HTML}} function #' @param options string containing tinyMCE initialization options. See demos or sourc...
1,808
mit
3a12b5e5e12ccbd88942655110ed42ad854f3a08
thomasvangurp/epiGBS
RnBeads/templates/assemblies.R
######################################################################################################################## ## annotations.R ## created: 2012-08-16 ## creator: Yassen Assenov ## --------------------------------------------------------------------------------------------------------------------- ## Collecti...
7,310
mit
fe7f2d65484526e64128e22478eab82c02cfba4c
natematias/reddit-data-reanalysis
analysis/gaps_summaries.R
library(ggplot2) library(lubridate) rm(list=ls()) #### PLOT MISSING DATA PER DAY (COMMENTS) missing_data_comments <- read.csv("../data/aggregate_data/Missing Data Timeline - Comment Timeline.csv") missing_data_comments$day <- as.Date(missing_data_comments$Date, format="%m/%d/%Y") ggplot(missing_data_comments, aes(d...
6,579
mit
e55c7febdb970038126ceb12b470fbf5a83d8659
graalvm/fastr
com.oracle.truffle.r.test.native/packages/testrffi/testrffi/tests/simpleTests.R
# Copyright (c) 2018, 2021, Oracle and/or its affiliates. All rights reserved. # DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. # # This code is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License version 3 only, as # published by the Free Software ...
12,765
gpl-2.0
a87eace14716a46a5d8be1cde654b55eb68e7512
peter19852001/decomp
sim.R
# # to randomly generate (synthetic) gene network in the form of matrices, # where each link a_ij has a number representing the # effect of gene i on gene j: +ve for activation, -ve for inhibition. # Associated with each a_ij =/= 0 is t_ij > 0, which represents the time delay # of the effect of gene i on gene j. gen_g...
8,813
gpl-2.0
dd75f6967819f8cde072ad067cb78c5505d42e9c
longphin/Bayesian---STA250
HW2/BLB/BLB_lin_reg_process.R
# Read in and process BLB results: mini <- FALSE if (mini){ d <- 40 } else { d <- 1000 } # BLB specs: s <- 5 # 50 r <- 50 # 100 outpath <- "output" respath <- "final" if (mini){ rootfilename <- "blb_lin_reg_mini" } else { rootfilename <- "blb_lin_reg_data" } results.se.filename <- paste0(respath,"/",rootfilen...
1,727
mit
1cd49fccbb37e19521b27591b91df512d913de9e
everdark/rbasic
samplecodes/src.R
findVAR <- function() exists("VAR")
40
cc0-1.0
dd75f6967819f8cde072ad067cb78c5505d42e9c
longphin/Stuff
HW2/BLB/BLB_lin_reg_process.R
# Read in and process BLB results: mini <- FALSE if (mini){ d <- 40 } else { d <- 1000 } # BLB specs: s <- 5 # 50 r <- 50 # 100 outpath <- "output" respath <- "final" if (mini){ rootfilename <- "blb_lin_reg_mini" } else { rootfilename <- "blb_lin_reg_data" } results.se.filename <- paste0(respath,"/",rootfilen...
1,727
mit
dd75f6967819f8cde072ad067cb78c5505d42e9c
STA250/Stuff
HW2/BLB/BLB_lin_reg_process.R
# Read in and process BLB results: mini <- FALSE if (mini){ d <- 40 } else { d <- 1000 } # BLB specs: s <- 5 # 50 r <- 50 # 100 outpath <- "output" respath <- "final" if (mini){ rootfilename <- "blb_lin_reg_mini" } else { rootfilename <- "blb_lin_reg_data" } results.se.filename <- paste0(respath,"/",rootfilen...
1,727
mit
dd75f6967819f8cde072ad067cb78c5505d42e9c
dmtryshmtv/STA250Stuff
HW2/BLB/BLB_lin_reg_process.R
# Read in and process BLB results: mini <- FALSE if (mini){ d <- 40 } else { d <- 1000 } # BLB specs: s <- 5 # 50 r <- 50 # 100 outpath <- "output" respath <- "final" if (mini){ rootfilename <- "blb_lin_reg_mini" } else { rootfilename <- "blb_lin_reg_data" } results.se.filename <- paste0(respath,"/",rootfilen...
1,727
mit
dd75f6967819f8cde072ad067cb78c5505d42e9c
minjay/Stuff
HW2/BLB/BLB_lin_reg_process.R
# Read in and process BLB results: mini <- FALSE if (mini){ d <- 40 } else { d <- 1000 } # BLB specs: s <- 5 # 50 r <- 50 # 100 outpath <- "output" respath <- "final" if (mini){ rootfilename <- "blb_lin_reg_mini" } else { rootfilename <- "blb_lin_reg_data" } results.se.filename <- paste0(respath,"/",rootfilen...
1,727
mit
39c0de72b42d7a611d7ffafbe2ee8bfda651ae75
SaraVarela/Bucanetes
script_bucanetes.R
##### load libraries library (raster) library (rgdal) library (dismo) ##### download climatic variables for the last glacial maximum (LGM) and for the present from worldclim.org ## ** = write the directory of the variables setwd ("**") LGM_CCSM<- stack (raster ("bio1.bil"), raster ("bio2.bil"),raster ("bio3.bil"), ...
3,276
unlicense
b01fb5fc09f468868cf321d25b1084c28e59ec79
osofr/gridisl
R/ModelPredictionStack.R
#' S3 methods for printing model fit summary for PredictionModel R6 class object #' #' Prints the modeling summaries #' @param x The model fit object produced by functions \code{make_PredictionStack}. #' @param ... Additional options passed on to \code{print.PredictionModel}. #' @export print.PredictionStack <- functio...
13,309
mit
4da46794bad8aa0e8d9840f2fbfc51af38ef29e5
berdaniera/StreamPULSE
spfns/spFunctions.R
checkpkg = function(pkg){ if(!pkg %in% rownames(installed.packages())) install.packages(pkg) suppressPackageStartupMessages(library(pkg, character.only=TRUE)) } checkpkg("zoo") checkpkg("tibble") checkpkg("readr") checkpkg("dplyr") # Calculate depth with water pressure (kPa), air pressure (kPa), air temp (C), dept...
2,777
gpl-3.0
fd7bdca89ac5633b512700721a0c91a763f34dcd
IQSS/Zelig4
tests/NO-CRAN-bootstrap.R
library(Zelig) data(coalition) z.out <- zelig(duration ~ fract + numst2 + crisis, model = "gamma", data = coalition[1:100, ]) x.low <- setx(z.out, fract=300, numst2 = 0, crisis=200) x.high <- setx(z.out, fract=300, numst2 = 1, crisis=200) s.out <- sim(z.out, x = x.low, x1 = x.high, num = 10, bootstrap=TRUE)
313
gpl-2.0
89e9e2b61f8e062034630403197c77f8261b3f21
MazamaScience/PWFSLSmoke
R/addWindBarbs.R
#' @keywords plotting #' @export #' @title Add wind barbs to a map #' @param x vector of longitudes #' @param y vector of latitudes #' @param speed vector of wind speeds in knots #' @param dir wind directions in degrees clockwise from north #' @param circleSize size of the circle #' @param circleFill circle fill color...
2,148
gpl-3.0
00baa6ae9043b11a0021a9efd8d286a492001b9c
franticspider/q2e
tests/isotest2.R
require(q2e) readline("Testing IGQPGAVGPAGIR") q2e_isodists("IGQPGAVGPAGIR") readline("Testing GPPGPQGAR") q2e_isodists("GPPGPQGAR") readline("Testing ACDEFGHIKLMNPQRSTVWY") q2e_isodists("ACDEFGHIKLMNPQRSTVWY") readline("Testing ABCDEFGHIJKLMNOPQRSTUVWXYZ") q2e_isodists("ABCDEFGHIJKLMNOPQRSTUVWXYZ")
314
lgpl-3.0
c7ac0e37f79ea727c182c0bf6e4411a980250649
kannix68/advent_of_code_2015
adventcode2015_01a.R
## R (R-language) # advent of code 2015. kannix68 (@github). # Day 1: Not Quite Lisp. # sorry, please currently set your directory setwd('~/devel/advent_of_code_2015') inFileName = 'adventcode2015_in01.txt' #** our algorithm algo <- function(s){ ups = gsub('\\)', '', s) n_all = nchar(s) n_ups = nchar(ups) n_...
1,053
mit
923b2efcf3dc138e1d35a2277079e1bb37bda019
tangelo-hub/romanescoTools
R/getDocData.R
#' Get Documentation Information for a Function #' #' Get documentation information for a function, including package, title, description, examples, and argument names and descriptions. #' #' @param functionName name of the function #' #' @return a named list of documentation components #' #' @examples #' a <- getDoc...
3,288
bsd-3-clause
f6efff0bf8e07d76d2f070ca46d1285e59f0cdb5
gustavobio/plumber
R/processor-image.R
#' @include processor.R #' @include plumber.R PlumberProcessor$new( "jpeg", function(req, res, data){ t <- tempfile() data$file <- t jpeg(t) }, function(val, req, res, data){ dev.off() con <- file(data$file, "rb") img <- readBin(con, "raw", file.info(data$file)$size) close(con) ...
748
mit
923b2efcf3dc138e1d35a2277079e1bb37bda019
hafen/cardoonTools
R/getDocData.R
#' Get Documentation Information for a Function #' #' Get documentation information for a function, including package, title, description, examples, and argument names and descriptions. #' #' @param functionName name of the function #' #' @return a named list of documentation components #' #' @examples #' a <- getDoc...
3,288
bsd-3-clause
f6efff0bf8e07d76d2f070ca46d1285e59f0cdb5
paulhendricks/plumber
R/processor-image.R
#' @include processor.R #' @include plumber.R PlumberProcessor$new( "jpeg", function(req, res, data){ t <- tempfile() data$file <- t jpeg(t) }, function(val, req, res, data){ dev.off() con <- file(data$file, "rb") img <- readBin(con, "raw", file.info(data$file)$size) close(con) ...
748
mit
7ce7532b667abf6d9df8412eb1aa6e27f7252a07
ChristosChristofidis/h2o-3
h2o-r/tests/Utils/shared_javapredict_GBM.R
heading("BEGIN TEST") conn <- new("H2OConnection", ip=myIP, port=myPort) heading("Uploading train data to H2O") iris_train.hex <- h2o.importFile(conn, train) heading("Creating GBM model in H2O") distribution <- if (exists("distribution")) distribution else "AUTO" balance_classes <- if (exists("balance_classes")) bal...
4,264
apache-2.0
0774423aa79824fd9215129bbf74930bfc11aabc
google/rappor
pipeline/metric_status.R
#!/usr/bin/Rscript # # Write an overview of task status, per-metric task status, task histograms. library(data.table) library(ggplot2) options(stringsAsFactors = FALSE) # get rid of annoying behavior Log <- function(fmt, ...) { cat(sprintf(fmt, ...)) cat('\n') } # max of non-NA values; NA if there are none May...
11,041
apache-2.0
e039d22db6eb2c4e07fa62c1c16c027c995ae275
andrewdefries/andrewdefries.github.io
FDA_Pesticide_Glossary/OPUS.R
library("knitr") library("rgl") #knit("OPUS.Rmd") #markdownToHTML('OPUS.md', 'OPUS.html', options=c("use_xhml")) #system("pandoc -s OPUS.html -o OPUS.pdf") knit2html('OPUS.Rmd')
180
mit
40b8b6603e58170e7eca658faf4fd9b9b15d5c2c
b0rxa/scmamp
R/data_manipulation.R
#' @title Expression based row filtering #' #' @description This is a simple function to filter data based on an expression defined using the colum names #' @param data A NAMED matrix or data frame to be filtered (column names are required). #' @param condition A string indicating the condition that the row have to ful...
9,624
gpl-2.0
a674fc588a01d17087562dbbad63d0b84985a3e8
seacode/rsimGmacs
R/midpoints.R
#' #'@title Calculate the midpoints of a vector. #' #'@description Function to calculate the midpoints of a vector. #' #'@param x - the vector to calculate the midpoints for #' #'@return the vector of midpoints #' #'@export #' midpoints<-function(x){ n<-length(x)-1; d<-0.5*(x[1+(1:n)]+x[1:n]); names(d)<-nam...
343
mit
a674fc588a01d17087562dbbad63d0b84985a3e8
wStockhausen/rsimTCSAM
R/midpoints.R
#' #'@title Calculate the midpoints of a vector. #' #'@description Function to calculate the midpoints of a vector. #' #'@param x - the vector to calculate the midpoints for #' #'@return the vector of midpoints #' #'@export #' midpoints<-function(x){ n<-length(x)-1; d<-0.5*(x[1+(1:n)]+x[1:n]); names(d)<-nam...
343
mit
79e7d6656dae041bb5c4f9af4f1f2af9f8c7f950
molgenis/NIPTeR
R/regression_result.R
regression_template <- function(result_set, chromo_focus, correction_status, samplenames, potential_predictors, models, sample_names_train_set = NULL, train_set_statistics = NULL, train_set_Zscores = NULL, type){ if (is.null(train_set_statistics)){ ...
5,725
lgpl-3.0
79e7d6656dae041bb5c4f9af4f1f2af9f8c7f950
ljohansson/NIPTeR
R/regression_result.R
regression_template <- function(result_set, chromo_focus, correction_status, samplenames, potential_predictors, models, sample_names_train_set = NULL, train_set_statistics = NULL, train_set_Zscores = NULL, type){ if (is.null(train_set_statistics)){ ...
5,725
lgpl-3.0
9fed949cb47107181f6dc549b48bf5a89525033d
alsotoes/compstat2016
tarea3IntegracionMonteCarlo/realMonteCarlo_example.R
fun <- function(x){ aux <- num*sqrt(10*x-x^2-24); aux[is.nan(aux)] <- 0; return(aux) } fun2 <- function(x){ aux <- sqrt(4-x^2) aux[is.nan(aux)] <- 0 return (aux) } from <- -2 to <- 2 n <- 1000 x <- runif(n, from, to) to1 <- to-from (monteCarlo <- mean(fun(x))) (monteCarlo <- to1*mean(...
331
gpl-3.0
8167ed1e8e2be63ed2a65a72fa55930c9ffe49fc
pdcarr/KIC8462852
astro_funcs.R
########################################################### AirMass <- function(JD,locObs,starLoc) { # JD is the vector of Julian dates # locObs is the decimal location = c(lat,long) of the observatory # starLoc is a vector of declination degrees, minutes, seconds and right ascension in h,m,s of the star # calculates A...
1,076
mit
27e1fe154ceff3eddd0c8c6c6d4aeb4a57239019
psobczyk/pesel_simulations
MiceAnalysis.R
library(FactoMineR) library(pesel) mouse = read.table("http://factominer.free.fr/docs/souris.csv", header = T, sep = ";", row.names = 1) expressions = mouse[, 24: ncol(mouse)] dim(expressions) # 40 120 ## Pesel analysis res <- pesel(expressions, npc.min = 0, npc.max = min(ncol(expressions) -2, nrow...
1,157
gpl-3.0
4da92e531459fe220e48102aacc78d70b1a6c05b
RGLab/preprocessData
R/skeleton.R
#' @importFrom assertthat assert_that #' @importFrom purrr map #' @importFrom usethis create_package .codefile_validate <- function(code_files) { # do they exist? assertthat::assert_that(all(unlist(purrr::map( code_files, file.exists ))), msg = "code_files do not all exist!") # are the .Rmd files? assertt...
7,916
artistic-2.0
462f63f876ad9a99364a37cdda1e904559c9e15b
NovaInstitute/Rpackages
novaUtils/R/splitMobenzi2.R
#' Decodes Mobenzi data with extraction of repeating sections #' #' @param filePaths A character argument containing the paths to .csv files (one per #' section) as downloaded from Mobenzi. #' @param formatOtions If true, formats the question options of code book variables #' with 'format_char'. #' @param tidy...
9,276
mit
555c77f84714bdc169ef537de964e76f0ce6b785
gmaubach/R-Project-Utilities
Development/t_frequencies.R
t_frequencies <- function(variable, sort = FALSE, # sort freq decimals = 1, # round to decimals useNA = "always", max_print = 100) { if (sort) { v_abs <- sort(table(variable, useNA = useNA)) } else { ...
1,380
gpl-2.0
3ec554a9c20bb56792d95cb979bacf693dae2e71
wStockhausen/rCompTCMs
R/modelComparisons.ModelFits.ZCsByYear.Fisheries.R
#' #' @title Render a document of comparison plots for model fits to fishery size composition data by year #' #' @description Function to render a document of comparison plots for model fits to #' fishery size composition data by year. #' #' @param models - named list of model results (as resLst objects) to compare #' ...
4,922
mit
91b18c85b2727f90361628f6a968d5d3d45a066f
USGS-R/mda.streams
R/list_metab_models.R
#' List the available metab_model objects #' #' @param text if specified, the query only returns metab_models whose text (or #' description, if available) matches the word[s] in \code{text}. Note that #' partial words are not matched -- e.g., text='nwis_0138' will not match #' models whose title includes 'nwis...
1,759
cc0-1.0
91b18c85b2727f90361628f6a968d5d3d45a066f
aappling-usgs/mda.streams
R/list_metab_models.R
#' List the available metab_model objects #' #' @param text if specified, the query only returns metab_models whose text (or #' description, if available) matches the word[s] in \code{text}. Note that #' partial words are not matched -- e.g., text='nwis_0138' will not match #' models whose title includes 'nwis...
1,759
cc0-1.0
cc9f81b1d65bbe0e7b7b9e6899378221be2a9537
tweed1e/networkasymmetry
R/solve_gamma.R
######################################################################## # solve_lambda_gamma.R # Function to solve for unobserved \Lambda and \Gamma, given observed A and G. # License: MIT # "" # Jesse Tweedle # , 2016 ######################################################################## solve_gamma <- function(R...
2,534
mit
00f255b3d71c0236ff12fe84ff0768980eb99e13
stharrold/demo
demo/app_intro/examples/2016_RMachineLearningByExample/Ch6_PredictCredit/dt_classifier.R
library(rpart)# tree models library(caret) # feature selection library(rpart.plot) # plot dtree library(ROCR) # model evaluation library(e1071) # tuning model source("performance_plot_utils.R") # plotting curves ## separate feature and class variables test.feature.vars <- test.data[,-1] test.class.var <- tes...
2,349
mit
ca53789a149e73b184ef94b33778106fe03e73bf
chipster/chipster-tools
tools/ngs/R/test-mothur.R
# TOOL test-mothur.R: "Test-Mothur" # INPUT file.fasta: "FASTA file" TYPE GENERIC # INPUT final.count_table: "Mothur count file" TYPE MOTHUR_COUNT # INPUT sequences-taxonomy-assignment.txt: "Sequences taxonomy assignment file" TYPE GENERIC # OUTPUT OPTIONAL final.unique.list # OUTPUT OPTIONAL final.asv.shared # OUTPUT ...
3,697
mit
b5a179cc122c58b014bd96c0b1a99707ffaa190d
ElCep/bazaRd
coop_viti/scrape_caves_particulieres.R
##script pour parser les pages du site http://www.si-vitifrance.com/ pour les caves particulière library(rgdal) ##manipumation de données spatial avec gdal library(XML) library(RCurl) library(stringr) ##manipulation des chaines de charactères rm(list=ls()) setwd("~/github/bazaRd/coop_viti/") ########################...
1,969
gpl-2.0
dc1c8e3884bdfe4f2cc5cc8d1b2c8bc0d562e9f0
v2south/spatial_bgsmtr
R_file/Create_W_true.R
#load pacakages library(mvtnorm) library(MCMCpack) library(miscTools) library(PottsUtils) library(matrixcalc) set.seed(12) rm(list=ls()) setwd(dir = "~/spatial_bgsmtr/") # create a W_true matrix # W_true matrix is simulated from the hierarchical model # gr...
5,866
gpl-3.0
901488a995c8c514fb67b955aec87112d3f518fd
AlejandroRuete/IgnoranceMaps
SLWapp/server.R
require(raster) require(rgdal) library(maptools) Swe<-readShapePoly("data/Sweden Simple Sweref.shp", proj4string=CRS("+proj=utm +zone=33 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs")) GreyColors<-colorRampPalette(c("white", "black"),interpolate="spline", space="Lab")( 16 ) RedBlue<-colorRampPalette(c("blue"...
16,996
gpl-3.0
81d8e554ba916dcfeaa7cffd2e1d939939e379b7
MicroPasts/MicroPasts-Scripts
crowdSourcingAdmin/contributorLists.R
## Creation of contributors to project text file. # Set working directory (for example as below) setwd("~/Documents/research/micropasts/analysis/contributions/") #MacOSX #setwd("C:\\micropasts\\analysis") #Windows #setwd("micropasts/analysis") #Linux # Create CSV directory if it does not exist if (!file.exists('csv')...
2,279
apache-2.0
531c5900fb4f7b992f5b9c96dc9b66cee686f5bb
polde-live/sgh-labs
20161015_przetw/20161015_setup.R
# Laboratorium z przetwarzania danych # 2016-10-15 # Biblioteki do realizacji poszczególnych zadań library(sas7bdat) library(dplyr) library(lubridate) library(stringr) # Uwaga - tylko na komputerze z uczelni! setwd(d); # Czytanie zbioru sas do f # Biblioteka sas7bdat # Funkcja sas7bdat::read.sas7bdat readsas <- func...
453
unlicense
40185032b62834a5b0d82a34f06f44037e84e304
DFITC/fts
c1/1-1.R
# # Copyright (c) 2015-2016 by Yuchao Zhao, Xiaoye Meng. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This prog...
962
gpl-3.0
40185032b62834a5b0d82a34f06f44037e84e304
xiaoyem/fts
c1/1-1.R
# # Copyright (c) 2015-2016 by Yuchao Zhao, Xiaoye Meng. # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This prog...
962
gpl-3.0
986619e724f5fb856711673e172f75b1db02cd78
keboola/application-sample
gettingStarted.R
#' this script will get you going #' #' installedPackages <- rownames(installed.packages()) cranPackages <- c("devtools", "shiny", "DT", "ggplot2", "plotly") new.packages <- cranPackages[!(cranPackages %in% installedPackages)] if(length(new.packages)) install.packages(new.packages) library(devtools) if (("aws.si...
1,124
mit
3174222824dc7bdad8b99df7621dabff92790827
mexicoevalua/app_municipios
server.R
library(shiny) # Load the ggplot2 package which provides # the 'mpg' dataset. data <- read.csv("data/data_table.csv", encoding="utf8") # Define a server for the Shiny app shinyServer(function(input, output) { # Filter data based on selections output$table <- renderDataTable({ if (input$estado != "Todos"...
569
mit
412cbe6ae82169b0f817a624bd0a398246dc1d46
ttriche/dma
R/model.update3.R
model.update3 <- function (piold, gamma, eps, y, yhat, predvar) { # Revised June 29, 2009: # Modified to regularize the posterior model probabilities away from zero # by adding eps to each one and renormalizing. # August 23, 2007. Update model posterior probabilities using # flattening. See C8338-9. # This will be...
1,040
gpl-2.0
c4091591db74fc2d986696c1fe146ea20ebe3ba0
SCAR/solong
data-raw/equations_krill.R
refs$Goeb2007 <- bibentry(bibtype="Article",key="Goeb2007", author=c(person(c("M","E"),"Goebel"),person(c("J","D"),"Lipsky"),person(c("C","S"),"Reiss"),person(c("V","J"),"Loeb")), year=2007, title="Using carapace measurements to dete...
55,797
mit
cf98983afb6d24fc0dec9d44cbcdd2b0114126e1
isidiomartins/TESTE
ui.R
# ui.R library(shiny) portarias <- readRDS("portarias_MAPA_2016-09-08.RDS") # Define UI for application that draws a histogram shinyUI(fluidPage( HTML('<div align = "center">'), # Application title titlePanel("Portarias do Ministério da Agricultura, Pecuária e Abastecimento"), HTML('</div>'), # Sidebar with...
1,057
gpl-3.0
dc48243b883e97fb8159dd7431e529afe5047c80
rgorman/syntacto_stylistics
R_files/code/open_ling/chunkByCountRelPos_July28.R
library(XML) source("code/corpusFunctions.R") input.dir <- "../rel_pos_prose" files.v <- dir(path=input.dir, pattern=".*xml") #the following script calls the user-defined function "getSwordChunkMaster). #this function will return a list of lists of tables, each table with a maximum of words = the second variable ...
2,362
cc0-1.0
dd8c175a13cfe3e4e443f51822c8f520f2e69bfc
pchmieli/h2o-3
h2o-r/h2o-package/R/export.R
#` #` Data Export #` #` Export data to local disk or HDFS. #` Save models to local disk or HDFS. #' Export an H2O Data Frame to a File #' #' Exports an H2O Frame (which can be either VA or FV) to a file. #' This file may be on the H2O instace's local filesystem, or to HDFS (preface #' the path with hdfs://) or to S3N ...
5,183
apache-2.0
90ef48829092b8d1cc8b2a2c11e17638477cc566
yukoga/useful-r
chap3 preprocessing and transform/3-2 how to deal with missing data.R
employee.IQ.JP <- data.frame( IQ = c(78, 84, 84, 85, 87, 91, 92, 94, 94, 96, 99, 105, 105, 106, 108, 112, 113, 115, 118, 134), JobPerformance = c(9, 13, 10, 8, 7, 7, 9, 9, 11, 7, 7, 10, 11, 15, 10, 10, 12, 14, 16, 12) ) employee.IQ.JP # create missing data flag library(ggplot2) employee.IQ.JP$MCAR <- employee.IQ.J...
1,439
mit
959d065853c0f18a409f8862008af865b8fe2389
nickreich/hospital-surv-data
code/read-data.R
######################################### ######################################### ### Research project: ### ### characterizing seasonal epidemics ### ### Emily Ramos, Nick Reich ### ### Modified 11/17/14 ### ######################################### ##########################...
4,334
gpl-2.0
dc48243b883e97fb8159dd7431e529afe5047c80
rgorman/SyntaxMetrics
R_files/code/open_ling/chunkByCountRelPos_July28.R
library(XML) source("code/corpusFunctions.R") input.dir <- "../rel_pos_prose" files.v <- dir(path=input.dir, pattern=".*xml") #the following script calls the user-defined function "getSwordChunkMaster). #this function will return a list of lists of tables, each table with a maximum of words = the second variable ...
2,362
gpl-2.0
6777b724cbc1a265ab6b5bd8818244ab3415e177
ArdiaD/PeerPerformance
R/sharpeTesting.R
## Set of R functions for Sharpe ratio testing # #' @name .sharpeTesting # #' @import compiler .sharpeTesting <- function(x, y, control = list()) { x <- as.matrix(x) y <- as.matrix(y) # process control parameters ctr <- processControl(control) # check if enough data are available for testing dxy <...
15,101
gpl-2.0
75913ce251243f34d4183b4df3a0db93f13e9178
cran/dcemri
demo/avg152T1_RL.R
avg152T1.RL <- read.img("avg152T1_RL_nifti") X <- nrow(avg152T1.RL) Y <- ncol(avg152T1.RL) Z <- nsli(avg152T1.RL) zrange <- range(avg152T1.RL) par(mfrow=c(10,10), mar=rep(0,4)) for (z in 1:Z) { image(1:X, 1:Y, avg152T1.RL[X:1,,z], zlim=zrange, col=grey(0:64/64), xlab="", ylab="", axes=FALSE) }
308
bsd-3-clause
8230bd705262a1b8dcb3b9e5b7b88e99ee20b16e
Gargonslipfisk/NLP
Topic_Modeling_2.R
#Ruta del directorio de trabajo setwd("~/Erreria/Topic Modelling") #Importa corpus como caracteres Hoteles_raw = readLines("Hotels.csv", encoding = "ANSI") #Convierte corpus a matriz Hoteles = as.matrix(Hoteles_raw) library(textcat) c <- textcat(Hoteles) # z <- cbind(Hoteles,c) # names(z)<- c("verbatim","l...
5,023
gpl-3.0
05a7d07d6dbaee6992d1d7683b9e1e35f484e884
gleday/ShrinkNet
R/getSVD.R
#' Convenience function for singular value decomposition #' #' @param ii integer. Gene index. #' @param tX p by n matrix of gene expression. #' #' @details #' The function returns the singular value decomposition of X_{ii}=UDV^T where #' X_{ii} is the transpose of tX_{ii} which represents the matrix tX without the iith...
668
gpl-2.0
e8d727817ab0932e9b3597eec0bd88a5bb7633eb
oneillkza/ContiBAIT
R/plotContigOrder.R
plotContigOrder.func <- function(contigOrder, lg='all', verbose=TRUE) { masterGroups <- sapply(1:nrow(contigOrder), function(x) strsplit(as.character(contigOrder[,1]), "\\.")[[x]][1]) if(lg == 'all'){lg <- seq(1:length(unique(masterGroups)))} for(link in lg) { if(verbose){message(' -> Processing ', link)} con...
3,738
bsd-2-clause
07bd15ba1428d40c5b475f388468267e91bf0b6c
mingkaijiang/quasi_equil_analytical
Plots/Figure5.R
#### Functions to generate Figure 5 #### Purpose: #### to draw barchart of wood, slow and passive SOM pools #### and demonstrate the effect of wood stoichiometric flexibility ################################################################################ ######### Main program Figure_5_plotting <- function() { m...
1,642
gpl-3.0
c0370bfa2a9389fa002791d82ff6aef28cf9ed5e
rho-devel/rho
src/extra/testr/filtered-test-suite/isnan/tc_isnan_8.R
expected <- eval(parse(text="c(FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE)")); test(id=0, code={ argv <- eval(parse(text="list(c(-Inf, 2.17292368994844e-311, 4.3458473798...
852
gpl-2.0