Datasets:

disi-unibo-nlp
/

SciLay

doi string	pmcid string	plain_text string	technical_text string	full_text string	journal string	topics list	keywords list
10.3390/ani11113294	PMC8614317	Mulberry leaf is widely used in ruminants feeding, such as sheep, beef cattle, and dairy calves. Due to the high content of crude fiber in mature mulberry leaves and branches and the presence of anti-nutritional factors such as tannin, excessive addition will affect the production performance and health of livestock an...	This study was conducted to investigate the effects of feeding fermented mulberry leaf powder (FMLP) on growth performance, slaughter performance, and meat quality of broilers. A total of 360 1-day-old chickens were randomly divided into 5 groups. The control group was fed basal diet (CON), 3% FMLP, 6% FMLP, 9% FMLP, a...	1. IntroductionWith the development of population and the improvement of people’s living standards, the demand for livestock and poultry production and the conventional feed resources is increasing. The shortage of feedstuff has become increasingly prominent and the price of conventional feedstuff with large consumptio...	animals : an open access journal from mdpi	[ "Article" ]	[ "fermented mulberry leaf powder", "broiler chicken", "meat quality", "growth", "slaughter performance" ]
10.3390/ani13050785	PMC10000113	This study was conducted to investigate the effects of dietary supplementation with Bacillus licheniformis and a combination of probiotics and enzymes on the growth and blood parameters of grazing yak calves. The body weight, body size, serum biochemical parameters, and growth hormone levels of grazing yaks were assess...	Early weaning is an effective strategy to improve cow feed utilization and shorten postpartum intervals in cows; however, this may lead to poor performance of the weaned calves. This study was conducted to test the effects of supplementing milk replacer with Bacillus licheniformis and a complex of probiotics and enzyme...	1. IntroductionYaks (Bos grunniens) occur on the Qinghai–Tibet Plateau at high altitudes and with long cold seasons and limited pasture resources. This species is a unique product of long-term natural selection, providing local herders with the most basic living materials and livelihood resources, such as meat, milk, s...	animals : an open access journal from mdpi	[ "Article" ]	[ "early weaning", "probiotics", "enzyme preparations", "yak calves", "growth performance" ]
10.3390/ani11051397	PMC8156027	Automated training devices are commonly used for investigating learning, memory, and other cognitive functions in warm-blood vertebrates, whereas manual training procedures are the standard in fish and other lower vertebrates, thus limiting comparison among species. Here, we directly compared the two different approach...	The growing use of teleosts in comparative cognition and in neurobiological research has prompted many researchers to develop automated conditioning devices for fish. These techniques can make research less expensive and fully comparable with research on warm-blooded species, in which automated devices have been used f...	1. IntroductionThe study of learning, memory and perception in animals has, since its inception, benefited from the use of automated training equipment. The use of these methods offers a two-fold advantage. First, they reduce the time needed for training and the related human labor required. Some experiments, especiall...	animals : an open access journal from mdpi	[ "Article" ]	[ "automated conditioning", "fish cognition", "learning constraints", "numerical discrimination", "Poecilia reticulata", "Skinner box" ]
10.3390/ani13101602	PMC10215146	The aim of this study was to characterize the RHU competencies according to the distance (short vs. long), causes of deaths, and associated risk factors. The studied population comprised 16,856 horses that participated in RHU rides from 2007 to 2018. During the entire period, there were 99 fatalities. The percentage of...	RHU is the oldest endurance sport in Uruguay. However, despite 80 years of racing, there are no studies to characterize this type of competition, explore rates and causes of death, and identify the associated risk factors. The aim was to characterize the Raid Hipico Uruguayo (RHU) competencies according to the distance...	1. IntroductionEndurance equestrian sports have a long history, but it has experienced great growth in recent decades, mainly FEI endurance. As described by the FEI, “Horsemanship and Horse welfare are the core of endurance riding. Endurance is a test of the Athlete’s ability to manage the Horse safely over an Enduranc...	animals : an open access journal from mdpi	[ "Article" ]	[ "horse", "fatalities", "comfort index", "experience", "equine", "animal welfare" ]
10.3390/ani11092614	PMC8465983	"The red deer (Cervus elaphus) de novo genome assembly (CerEla1.0) has provided a great resource for(...TRUNCATED)	"The family Cervidae groups a range of species with an increasing economic significance. Their karyo(...TRUNCATED)	"1. IntroductionThe family Cervidae (Ruminantia) groups more than fifty extant deer species, includi(...TRUNCATED)	animals : an open access journal from mdpi	[ "Article" ]	["BAC mapping","comparative cytogenetics","chromosome fission","chromosome fusion","FISH","genome as(...TRUNCATED)
10.3390/ani13061115	PMC10044701	"Recently, increasing the efficiency of porcine embryo cultures by promoting oocyte maturation in vi(...TRUNCATED)	"As a member of the neurotrophic family, brain-derived neurotrophic factor (BDNF) provides a key lin(...TRUNCATED)	"1. IntroductionOvarian follicle development is a fundamental process of reproductive physiology in (...TRUNCATED)	animals : an open access journal from mdpi	[ "Article" ]	[ "BDNF", "porcine", "proliferation", "microRNA", "CCND1", "ERK" ]
10.3390/ani12010052	PMC8749932	"Transport stress (TS) can impact the physiology and psychology of broilers, and this can be an impo(...TRUNCATED)	"Abnormal iron metabolism can cause oxidative stress in broilers, and transport stress (TS) may pote(...TRUNCATED)	"1. IntroductionThe pre-slaughter transport process is an important integral part of poultry managem(...TRUNCATED)	animals : an open access journal from mdpi	[ "Article" ]	[ "transport stress", "broilers", "iron homeostasis", "TMT proteomics" ]
10.3390/ani12030387	PMC8833775	"The European eel is a species with high commercial value for aquaculture, and it has suffered a dra(...TRUNCATED)	"The European eel (Anguilla anguilla) is a commercially valued species for aquaculture. Over the pas(...TRUNCATED)	"1. IntroductionThe European eel (Anguilla anguilla) is a commercially valued species, especially fo(...TRUNCATED)	animals : an open access journal from mdpi	[ "Article" ]	["European eel","spermiation","ovulation","human chorionic gonadotropin hormone","carp pituitary ext(...TRUNCATED)
10.3390/ani11082164	PMC8388502	"Sea cage farms dominate European aquaculture production of seabass (Dicentrarchus labrax) and gilth(...TRUNCATED)	"The behavioural responses of fish to a stressful situation must be considered an adverse reaction c(...TRUNCATED)	"1. IntroductionAnimal welfare evaluation should be promoted so that decisions are made based on sci(...TRUNCATED)	animals : an open access journal from mdpi	[ "Review" ]	[ "seabass", "seabream", "welfare", "stunning", "slaughtering" ]
10.3390/ani12030309	PMC8833531	"In Aotearoa–New Zealand, the helicopter application of the toxin sodium fluoroacetate (1080) is a(...TRUNCATED)	"Aotearoa–New Zealand has embarked on an ambitious goal: to completely eradicate key invasive mamm(...TRUNCATED)	"1. IntroductionInvasive mammals present a global threat to biodiversity, especially in island ecosy(...TRUNCATED)	animals : an open access journal from mdpi	[ "Article" ]	["density","eradication","invasive species","predator-free","Rattus rattus","rodent","sodium fluoroa(...TRUNCATED)

End of preview. Expand in Data Studio

Dataset Card for SciLay

Dataset Summary

SciLay comprises 43,790 instances, each representing a scientific article in the biomedical domain. Each instance in the dataset includes the following components:

plain_text: Containing a plain language summary of the scientific article. This section is written in a simple and accessible language, and is intended to be understandable by a wide audience.
technical_text: This section contains the abstract of the scientific article. It provides a detailed and technical description of the research conducted in the article.
full_text: This section contains the complete article of the scientific research.

In addition to the textual content, each instance is associated with the following metadata: - Keywords: Keywords that capture the main topics and themes addressed in the article. - Journal: The journal in which the article is published, providing context about the source of the research. - DOI (Digital Object Identifier): A unique identifier for the article, facilitating easy referencing.

The main objective of the SciLay dataset is to support the development and evaluation of text summarization models that can effectively simplify complex scientific language while retaining the essential information. Each article is published by a scientific journal. There are 15 journal sources:

NC: Nature Communications
A: Animals : an Open Access Journal from MDPI
PLGEN: PLoS Genetics
PLPAT: PLoS Pathogens
PLCB: PLoS Computational Biology
PLNTD: PLoS Neglected Tropical Diseases
B: Biology
I: Insects
PLB: PLoS Biology
CB: Communications Biology
SD: Scientific Data
MBIO: mBio
C: Cancers
OTHER: which includes additional journals that taken individually would not have contributed sufficient instances

Current defaults are 1.0.0 version (cased raw strings) and 'all' journals:

from datasets import load_dataset

ds = load_dataset("disi-unibo-nlp/SciLay")  # default is 'all' journals
ds = load_dataset("disi-unibo-nlp/SciLay", "all")  # the same as above
ds = load_dataset("disi-unibo-nlp/SciLay", "NC")  # only 'NC' journal (Nature Communications)
ds = load_dataset("disi-unibo-nlp/SciLay", journals=["NC", "A"])

Languages

English

Dataset Structure

Data Instances

Each instance contains a set of doi, pmcid, plain_text, technical_text, journal, topics, keywords. Each of which was extracted by scraping articles in XML and HTML format.

{
  'doi': '10.3390/ani12040445',
  'pmcid': 'PMC8868321',
  'plain_text': 'PPP3CA is one of the candidate genes for goat reproduction, but no studies have been carried out yet. Therefore, the purpose of this study was to determine the associations between copy number variations in the goat PPP3CA gene and litter size and semen quality in goats, including Shaanbei white cashmere goats (SBWC) (n = 353) and Guizhou Heima (GZHM) goats (n = 64). Based on the association analysis, the results showed that only CNV1 (copy number variation 1) and CNV2 (copy number variation 2) were distinctly related to the first-birth litter size in female goats (p = 7.6802 × 10−11; p = 5.0895 × 10−9), and they were also significantly associated with the semen quality of SBWC goats (p < 0.05). These findings prove that the PPP3CA gene plays an important role in reproduction traits in goats.',
  'technical_text': 'Copy number variations (CNVs) have many forms of variation structure, and they play an important role in the research of variety diversity, biological evolution and disease correlation. Since CNVs have a greater impact on gene regulation and expression, more studies are being finalized on CNVs in important livestock and poultry species. The protein phosphatase 3 catalytic subunit alpha (PPP3CA) is a key candidate gene involved in the goat fecundity trait, and has important effects on precocious puberty, estrogen signal transduction pathways and oocyte meiosis. Additionally, PPP3CA also has a dephosphorylation effect in the process of spermatogonial stem cell meiosis and spermatogenesis. So far, there is no research on the relationship between the copy number variations of the PPP3CA gene and reproduction traits. Therefore, the purpose of this study was to determine the association between copy number variations in the goat PPP3CA gene and litter size and semen quality in Shaanbei white cashmere goats (SBWC) (n = 353) and Guizhou Heima goats (n = 64). Based on the association analysis, the results showed that only CNV1 and CNV2 within the PPP3CA gene were distinctly related to the first-birth litter size in female goats (p = 7.6802 × 10−11; p = 5.0895 × 10−9, respectively) and they were also significantly associated with the semen quality of SBWC goats (p < 0.05). In addition, individuals with Loss genotypes demonstrated better phenotypic performance compared to those with other types. Therefore, CNV1 and CNV2 of the PPP3CA gene are potentially useful for breeding, as they are linked to important goat reproduction traits.',
  'full_text': '...'
  'journal': 'Animals : an Open Access Journal from MDPI',
  'topics': [ 'Article' ],
  'keywords': [ 'goat', 'PPP3CA', 'copy number variation (CNV)', 'litter size', 'semen quality' ]
}

Data Fields

doi: (Digital Object Identifier). It is a unique alphanumeric string assigned to a digital document, such as a research paper, article, or dataset. Not all istances have it.
pmcid: A unique identifier in the PubMed Central library database. Not all istances have it.
plain_text: The summary of the article in plain english.
technical_text: The abstract of the article.
full_text: The complete article.
journal: The journal which published the article.
topics: An object containing the types in which the article is classified (i.e. Research Article, Review, ecc.). Not all istances have it.
keywords: An object containing the keywords of the article. Not all istances have it.

Data Splits

	train	validation	test
all	35026	4380	4384
NC	5549	694	694
A	3909	489	489
PLGEN	3087	386	386
PLPAT	2920	365	365
PLCB	2589	324	324
PLNTD	2289	286	287
B	1617	202	203
I	1181	148	148
PLB	896	112	113
CB	867	108	109
SD	725	91	91
MBIO	607	76	76
C	6782	848	848
OTHER	2008	251	251

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