| """Model, optimizer, and checkpoint setup for metadata training.""" |
|
|
| from __future__ import annotations |
|
|
| import argparse |
| from pathlib import Path |
|
|
| import torch |
|
|
| from milk10k_effb2_metadata.checkpoints import ( |
| infer_checkpoint_backend, |
| load_encoder_checkpoint, |
| resolve_backbone_backends, |
| ) |
| from milk10k_effb2_metadata.models import ( |
| DualEffB2MetadataClassifier, |
| is_one_encoder_image_fusion, |
| model_class_for_backbone, |
| ) |
|
|
|
|
| def load_model_state_compat(model: DualEffB2MetadataClassifier, state: dict[str, torch.Tensor]) -> None: |
| """Load checkpoints created before LWS added the class_scales parameter.""" |
| incompatible = model.load_state_dict(state, strict=False) |
| missing = set(incompatible.missing_keys) |
| unexpected = set(incompatible.unexpected_keys) |
| allowed_missing = {"class_scales"} |
| if missing - allowed_missing or unexpected: |
| raise RuntimeError( |
| f"Checkpoint state mismatch: missing={sorted(missing)}, unexpected={sorted(unexpected)}" |
| ) |
| if "class_scales" in missing: |
| model.class_scales.data.fill_(1.0) |
|
|
|
|
| def infer_branch_backend_from_state(state: dict[str, torch.Tensor], branch_prefix: str) -> str: |
| keys = [key.removeprefix(branch_prefix) for key in state if key.startswith(branch_prefix)] |
| timm_prefixes = ("conv_stem.", "bn1.", "blocks.", "conv_head.", "bn2.", "stages.", "stem.") |
| torchvision_prefixes = ("features.", "avgpool.", "classifier.") |
| timm_hits = sum(key.startswith(timm_prefixes) for key in keys) |
| torchvision_hits = sum(key.startswith(torchvision_prefixes) for key in keys) |
| if timm_hits > torchvision_hits: |
| return "timm" |
| if torchvision_hits > timm_hits: |
| return "torchvision" |
| if any(key.startswith("layer") for key in keys): |
| return "timm" |
| raise RuntimeError(f"Cannot infer backend for resume checkpoint branch prefix {branch_prefix!r}.") |
|
|
|
|
| def resolve_training_backbone_backends(args: argparse.Namespace, device: torch.device) -> tuple[str, str]: |
| image_fusion = getattr(args, "image_fusion", "concat") |
| if is_one_encoder_image_fusion(image_fusion): |
| if args.backbone_backend != "auto": |
| return args.backbone_backend, args.backbone_backend |
| if args.resume_checkpoint is not None: |
| checkpoint = torch.load(args.resume_checkpoint.expanduser().resolve(), map_location=device, weights_only=False) |
| state = checkpoint["model_state"] |
| backend = infer_branch_backend_from_state(state, "shared_encoder.") |
| checkpoint_args = checkpoint.get("args", {}) |
| if checkpoint_args.get("backbone") and args.backbone == "efficientnet_b2": |
| args.backbone = checkpoint_args["backbone"] |
| print(f"Auto-detected resume shared backend: shared={backend}") |
| return backend, backend |
| print("One-encoder image fusion: using timm backbone initialized from ImageNet weights.") |
| return "timm", "timm" |
| if args.backbone_backend != "auto": |
| return args.backbone_backend, args.backbone_backend |
| if args.clinical_checkpoint is not None and args.dermoscopic_checkpoint is not None: |
| return resolve_backbone_backends(args, device) |
| if args.clinical_checkpoint is not None: |
| clinical_backend = infer_checkpoint_backend(args.clinical_checkpoint, device, "clinical") |
| print( |
| "Auto-detected clinical backbone backend: " |
| f"clinical={clinical_backend}, dermoscopic={clinical_backend} (ImageNet initialized)" |
| ) |
| return clinical_backend, clinical_backend |
| if args.dermoscopic_checkpoint is not None: |
| dermoscopic_backend = infer_checkpoint_backend(args.dermoscopic_checkpoint, device, "dermoscopic") |
| print( |
| "Auto-detected dermoscopic backbone backend: " |
| f"clinical={dermoscopic_backend} (ImageNet initialized), dermoscopic={dermoscopic_backend}" |
| ) |
| return dermoscopic_backend, dermoscopic_backend |
| if args.resume_checkpoint is None: |
| print("No branch checkpoints passed; using timm backbones initialized from ImageNet weights.") |
| return "timm", "timm" |
| checkpoint = torch.load(args.resume_checkpoint.expanduser().resolve(), map_location=device, weights_only=False) |
| state = checkpoint["model_state"] |
| clinical_backend = infer_branch_backend_from_state(state, "clinical_encoder.") |
| dermoscopic_backend = infer_branch_backend_from_state(state, "dermoscopic_encoder.") |
| checkpoint_args = checkpoint.get("args", {}) |
| if checkpoint_args.get("backbone") and args.backbone == "efficientnet_b2": |
| args.backbone = checkpoint_args["backbone"] |
| print(f"Auto-detected resume backends: clinical={clinical_backend}, dermoscopic={dermoscopic_backend}") |
| return clinical_backend, dermoscopic_backend |
|
|
|
|
| def build_optimizer( |
| model: DualEffB2MetadataClassifier, |
| args: argparse.Namespace, |
| encoders_trainable: bool, |
| ) -> torch.optim.Optimizer: |
| head_params = [] |
| encoder_params = [] |
| metadata_params = [] |
| for name, param in model.named_parameters(): |
| if not param.requires_grad: |
| continue |
| if name.startswith(("clinical_encoder.", "dermoscopic_encoder.", "shared_encoder.")): |
| encoder_params.append(param) |
| elif name.startswith( |
| ( |
| "metadata_head.", |
| "clinical_metadata_gate.", |
| "dermoscopic_metadata_gate.", |
| "shared_metadata_gate.", |
| ) |
| ): |
| metadata_params.append(param) |
| else: |
| head_params.append(param) |
|
|
| groups = [{"params": head_params, "lr": args.head_lr}] |
| if metadata_params: |
| groups.append({"params": metadata_params, "lr": args.metadata_lr if args.metadata_lr is not None else args.head_lr}) |
| if encoders_trainable and encoder_params: |
| groups.append({"params": encoder_params, "lr": args.encoder_lr}) |
| return torch.optim.AdamW(groups, weight_decay=args.weight_decay) |
|
|
|
|
| def set_metadata_head_trainable(model: DualEffB2MetadataClassifier, trainable: bool) -> None: |
| for param in model.metadata_head.parameters(): |
| param.requires_grad = trainable |
| for module_name in ("clinical_metadata_gate", "dermoscopic_metadata_gate", "shared_metadata_gate"): |
| module = getattr(model, module_name, None) |
| if module is not None: |
| for param in module.parameters(): |
| param.requires_grad = trainable |
|
|
|
|
| def load_resume_checkpoint( |
| checkpoint_path: Path | None, |
| model: DualEffB2MetadataClassifier, |
| device: torch.device, |
| ema_model: torch.nn.Module | None = None, |
| ) -> tuple[int, float, str | None]: |
| if checkpoint_path is None: |
| return 1, float("-inf"), None |
| checkpoint_path = checkpoint_path.expanduser().resolve() |
| if not checkpoint_path.exists(): |
| raise FileNotFoundError(f"Resume checkpoint not found: {checkpoint_path}") |
| checkpoint = torch.load(checkpoint_path, map_location=device, weights_only=False) |
| load_model_state_compat(model, checkpoint["model_state"]) |
| if ema_model is not None and "ema_model_state" in checkpoint: |
| ema_model.load_state_dict(checkpoint["ema_model_state"]) |
| next_epoch = int(checkpoint.get("epoch", 0)) + 1 |
| best_val_f1 = float( |
| checkpoint.get( |
| "best_selection_metric", |
| checkpoint.get("best_val_f1_macro", float("-inf")), |
| ) |
| ) |
| phase = checkpoint.get("phase") |
| selection_metric_name = checkpoint.get("selection_metric_name", "f1_macro") |
| print( |
| f"Resumed checkpoint: {checkpoint_path}, phase={phase}, " |
| f"last_epoch={next_epoch - 1}, best_{selection_metric_name}={best_val_f1:.4f}" |
| ) |
| print("Optimizer is re-created from current CLI LR settings.") |
| return next_epoch, best_val_f1, str(phase) if phase is not None else None |
|
|
|
|
| def build_model( |
| class_names: list[str], |
| metadata_dim: int, |
| args: argparse.Namespace, |
| device: torch.device, |
| clinical_backbone_backend: str, |
| dermoscopic_backbone_backend: str, |
| ) -> DualEffB2MetadataClassifier: |
| model_class = model_class_for_backbone(args.backbone) |
| model = model_class( |
| num_classes=len(class_names), |
| metadata_input_dim=metadata_dim, |
| branch_dim=args.branch_dim, |
| metadata_dim=args.metadata_dim, |
| classifier_hidden_dim=args.classifier_hidden_dim, |
| dropout=args.dropout, |
| imagenet_pretrained=args.imagenet_pretrained, |
| clinical_backbone_backend=clinical_backbone_backend, |
| dermoscopic_backbone_backend=dermoscopic_backbone_backend, |
| backbone=args.backbone, |
| disable_metadata=args.disable_metadata, |
| metadata_fusion=args.metadata_fusion, |
| image_fusion=getattr(args, "image_fusion", "concat"), |
| metadata_gate_hidden_dim=args.metadata_gate_hidden_dim, |
| classifier_style=getattr(args, "classifier_style", "legacy"), |
| logit_fusion_mode=args.logit_fusion_mode, |
| fusion_logit_weight=args.fusion_logit_weight, |
| clinical_logit_weight=args.clinical_logit_weight, |
| dermoscopic_logit_weight=args.dermoscopic_logit_weight, |
| ).to(device) |
| if args.resume_checkpoint is None and not is_one_encoder_image_fusion(getattr(args, "image_fusion", "concat")): |
| if args.clinical_checkpoint is not None: |
| load_encoder_checkpoint(args.clinical_checkpoint, model.clinical_encoder, "clinical", device) |
| if args.dermoscopic_checkpoint is not None: |
| load_encoder_checkpoint(args.dermoscopic_checkpoint, model.dermoscopic_encoder, "dermoscopic", device) |
| if args.disable_metadata or args.freeze_metadata_head: |
| set_metadata_head_trainable(model, False) |
| return model |
|
|