| --- |
| license: other |
| pretty_name: AxoBench |
| task_categories: |
| - time-series-forecasting |
| - tabular-regression |
| tags: |
| - neuroscience |
| - computational-neuroscience |
| - neuron-simulation |
| - single-cell |
| - benchmark |
| - dendrites |
| - coreneuron |
| --- |
| |
| # AxoBench |
|
|
| This public working release contains AxoBench, the DendroBench v1 neuronio-like dataset |
| generated with the CoreNEURON GPU path. It is intended for internal benchmark |
| validation, diagnostic development, and paper preparation before a public |
| release decision. |
|
|
| ## Layout |
|
|
| - `train/`: 785 compressed NPZ shards, 100,000 traces. |
| - `val/`: 100 compressed NPZ shards, 12,500 traces. |
| - `test/`: 100 compressed NPZ shards, 12,500 traces. |
| - `private-test/`: 100 compressed NPZ shards, 12,500 traces. |
| - `interventions/<name>/`: paired baseline/intervention NPZ shards for |
| `event_dropout`, `exc_dropout`, `inh_dropout`, `site_silence`, and |
| `temporal_jitter`; each intervention contains 2,500 paired traces. |
|
|
| The ordinary trace shards use `.npz` files with arrays such as `inputs`, |
| `targets`, and `sample_ids`. Intervention shards use paired arrays such as |
| `baseline_inputs`, `intervention_inputs`, `baseline_targets`, and |
| `intervention_targets`. |
|
|
| ## Compression |
|
|
| The payload is stored as shard-wise deflated NPZ files, matching the practical |
| NeuronIO-style packaging while preserving partial downloads and resumable |
| uploads. Do not wrap this folder in one monolithic zip or tar archive for the |
| primary Hugging Face distribution: the shards are already compressed and an |
| outer archive would make subset access worse. |
|
|
| See `compression_report.json` for measured compression ratios and |
| `checksums.sha256` for file integrity checks. |
|
|
| ## Metadata |
|
|
| - `dataset_manifest_template.json`: intended dataset structure and benchmark |
| framing. |
| - `generation_summary.json`: generation backend, morphology set, sample counts, |
| and runtime summary. |
| - `generation_completion_check.json`: split/intervention completion summary. |
| - `dataset_package_manifest.json`: upload/package-level summary. |
| - `compression_report.json`: compression audit. |
| - `checksums.sha256`: SHA-256 checksums for all packaged files except the |
| checksum file itself. |
|
|
| ## Access State |
|
|
| This upload is public so collaborators and reviewers can access the packaged |
| shards directly. The dataset card, license, private-test policy, and |
| paper-facing framing should still be reviewed before a paper-facing release |
| tag or DOI mirror. |
|
|
