eccDNAMamba/cancer_eccdna_prediction_short

Cancer-associated eccDNA prediction (short)

This dataset contains Cancer-associated eccDNA prediction (short) sampled from healthy and cancer tissues. Each entry contains:

• sequence: DNA string (A/T/C/G)
• label: 0 = healthy, 1 = cancer

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📁 Folder Structure

cancer_eccdna_prediction_short/
├── data/
│   └── cancer_eccdna_prediction_short.csv
├── hf_data/
│   ├── dataset_info.json
│   └── data.arrow
└── README.md

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🚀 Quick Usage

from datasets import load_dataset, load_from_disk

# Load from local
dataset = load_from_disk("cancer_eccdna_prediction_short/hf_data")

# Load from Hugging Face Hub (after upload)
dataset = load_dataset("your-username/cancer_eccdna_prediction_short")

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Citation

If you use this dataset, please cite:

@inproceedings{liu2025eccdnamamba,
  title={eccDNAMamba: A Pre-Trained Model for Ultra-Long eccDNA Sequence Analysis},
  author={Zhenke Liu and Jien Li and Ziqi Zhang},
  booktitle={ICML 2025 GenBio Workshop},
  year={2025},
  url={https://openreview.net/forum?id=56xKN7KJjy}
}