Datasets:
id int64 | age int64 | sex string | hiv_positive int64 | previous_tb int64 | facility_level string | specimen_type string | specimen_quality_adequate int64 | smear_done int64 | smear_method string | genexpert_done int64 | culture_done int64 | xray_done int64 | urine_lam_done int64 | smear_result string | xpert_result string | rif_resistance string | culture_result string | culture_method string | dst_done int64 | lpa_done int64 | xray_suggestive int64 | tb_diagnosed int64 | true_tb int64 | tat_primary_hrs float64 | tat_within_target int64 | reagent_stockout int64 | xpert_error_invalid int64 | specimen_referred int64 | treatment_initiated int64 | year int64 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 39 | male | 0 | 0 | tertiary | other | 0 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 60.6 | 0 | 1 | 0 | 0 | 0 | 2,022 |
2 | 23 | female | 0 | 0 | district | other | 0 | 1 | zn_light | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 18.6 | 1 | 0 | 0 | 0 | 0 | 2,020 |
3 | 33 | male | 1 | 0 | health_centre | urine | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 134.8 | 0 | 1 | 0 | 0 | 0 | 2,022 |
4 | 19 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 40.3 | 0 | 0 | 0 | 0 | 0 | 2,020 |
5 | 32 | female | 1 | 1 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 1 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 61.2 | 0 | 1 | 0 | 0 | 0 | 2,022 |
6 | 42 | female | 0 | 0 | district | sputum_induced | 1 | 1 | led_fluorescence | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 1 | 0 | 1 | 69.4 | 0 | 0 | 0 | 0 | 0 | 2,020 |
7 | 23 | female | 0 | 0 | district | sputum_induced | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 28.8 | 0 | 0 | 0 | 0 | 0 | 2,019 |
8 | 60 | male | 1 | 1 | health_centre | sputum | 0 | 1 | zn_light | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 103 | 0 | 0 | 0 | 0 | 0 | 2,021 |
9 | 38 | male | 0 | 0 | tertiary | urine | 0 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 51.2 | 0 | 1 | 0 | 0 | 0 | 2,023 |
10 | 21 | male | 0 | 0 | clinic | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 25.3 | 0 | 0 | 0 | 0 | 0 | 2,023 |
11 | 33 | male | 0 | 0 | health_centre | sputum | 1 | 1 | led_fluorescence | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 39.6 | 0 | 0 | 0 | 0 | 0 | 2,020 |
12 | 24 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 40.6 | 0 | 0 | 0 | 0 | 0 | 2,022 |
13 | 35 | male | 0 | 0 | district | sputum | 1 | 1 | led_fluorescence | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 26.9 | 0 | 0 | 0 | 0 | 0 | 2,023 |
14 | 31 | male | 0 | 1 | tertiary | urine | 0 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 84.2 | 0 | 0 | 0 | 0 | 0 | 2,023 |
15 | 19 | male | 1 | 0 | clinic | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 44.9 | 0 | 1 | 0 | 1 | 0 | 2,019 |
16 | 38 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 1 | 0 | 1 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 1 | 0 | 0 | 13.8 | 1 | 0 | 0 | 0 | 0 | 2,023 |
17 | 17 | female | 0 | 0 | clinic | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 52.4 | 0 | 1 | 0 | 1 | 0 | 2,021 |
18 | 39 | male | 0 | 0 | district | sputum | 1 | 1 | led_fluorescence | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 59.8 | 0 | 0 | 0 | 0 | 0 | 2,022 |
19 | 35 | male | 0 | 0 | health_centre | urine | 1 | 1 | zn_light | 1 | 0 | 1 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 33 | 0 | 0 | 0 | 0 | 0 | 2,020 |
20 | 21 | male | 0 | 0 | health_centre | sputum_induced | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 71.4 | 0 | 1 | 0 | 1 | 0 | 2,019 |
21 | 40 | male | 0 | 0 | district | urine | 0 | 1 | zn_light | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 50.3 | 0 | 0 | 0 | 0 | 0 | 2,023 |
22 | 49 | male | 0 | 0 | clinic | sputum | 0 | 1 | zn_light | 0 | 1 | 0 | 0 | negative | not_done | na | negative | solid_lj | 0 | 0 | 0 | 0 | 0 | 32.3 | 0 | 0 | 0 | 0 | 0 | 2,023 |
23 | 19 | female | 0 | 0 | clinic | sputum | 0 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 87.8 | 0 | 0 | 0 | 1 | 0 | 2,023 |
24 | 43 | male | 1 | 1 | health_centre | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 32.7 | 0 | 1 | 0 | 0 | 0 | 2,022 |
25 | 36 | female | 1 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 1 | 0 | 0 | negative | not_done | na | negative | solid_lj | 0 | 0 | 0 | 0 | 0 | 28.1 | 0 | 0 | 0 | 0 | 0 | 2,023 |
26 | 32 | male | 1 | 0 | district | sputum_induced | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 52 | 0 | 0 | 0 | 0 | 0 | 2,021 |
27 | 39 | female | 0 | 0 | district | sputum_induced | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 1 | 41.6 | 0 | 0 | 0 | 0 | 0 | 2,021 |
28 | 30 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 65.2 | 0 | 1 | 0 | 0 | 0 | 2,023 |
29 | 40 | male | 0 | 0 | district | csf | 1 | 1 | zn_light | 1 | 0 | 1 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 29.8 | 0 | 0 | 0 | 0 | 0 | 2,022 |
30 | 31 | female | 1 | 0 | health_centre | sputum | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 193.7 | 0 | 0 | 0 | 1 | 0 | 2,023 |
31 | 38 | male | 1 | 0 | clinic | sputum | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 108.7 | 0 | 0 | 0 | 0 | 0 | 2,023 |
32 | 37 | male | 0 | 0 | clinic | sputum | 0 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 51.5 | 0 | 0 | 0 | 0 | 0 | 2,019 |
33 | 34 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 1 | 1 | 0 | negative | not_done | na | negative | liquid_mgit | 0 | 0 | 0 | 0 | 0 | 89.6 | 0 | 0 | 0 | 0 | 0 | 2,023 |
34 | 13 | female | 0 | 0 | tertiary | csf | 1 | 1 | led_fluorescence | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 38.8 | 0 | 1 | 0 | 0 | 0 | 2,019 |
35 | 29 | male | 0 | 0 | clinic | sputum | 0 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 1 | 120.1 | 0 | 0 | 0 | 1 | 0 | 2,019 |
36 | 38 | female | 0 | 0 | health_centre | pleural_fluid | 1 | 0 | none | 0 | 1 | 0 | 0 | not_done | not_done | na | negative | solid_lj | 0 | 0 | 0 | 0 | 0 | 73.5 | 0 | 0 | 0 | 0 | 0 | 2,020 |
37 | 13 | male | 0 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 52.3 | 0 | 0 | 0 | 1 | 0 | 2,022 |
38 | 17 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 47.6 | 0 | 0 | 0 | 0 | 0 | 2,020 |
39 | 33 | male | 0 | 0 | health_centre | csf | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 59.2 | 0 | 0 | 0 | 0 | 0 | 2,021 |
40 | 44 | female | 0 | 0 | clinic | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 15.6 | 1 | 1 | 0 | 1 | 0 | 2,020 |
41 | 23 | male | 0 | 0 | tertiary | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | positive | not_done | na | not_done | na | 0 | 0 | 0 | 1 | 1 | 68.2 | 0 | 0 | 0 | 0 | 1 | 2,022 |
42 | 21 | male | 0 | 0 | clinic | sputum | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 54.3 | 0 | 0 | 0 | 0 | 0 | 2,020 |
43 | 43 | male | 0 | 1 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 62.1 | 0 | 0 | 0 | 0 | 0 | 2,023 |
44 | 35 | female | 0 | 0 | clinic | sputum | 0 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 139 | 0 | 1 | 0 | 1 | 0 | 2,021 |
45 | 36 | male | 0 | 0 | health_centre | sputum | 0 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 46.8 | 0 | 1 | 0 | 0 | 0 | 2,022 |
46 | 35 | female | 0 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 1 | 0 | 0 | negative | not_done | na | negative | solid_lj | 0 | 0 | 0 | 0 | 0 | 31.5 | 0 | 0 | 0 | 0 | 0 | 2,022 |
47 | 58 | male | 0 | 0 | health_centre | sputum | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 78.5 | 0 | 0 | 0 | 1 | 0 | 2,023 |
48 | 28 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 27.3 | 0 | 0 | 0 | 0 | 0 | 2,023 |
49 | 24 | male | 1 | 0 | tertiary | other | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 40.1 | 0 | 0 | 0 | 0 | 0 | 2,020 |
50 | 35 | male | 1 | 0 | health_centre | sputum | 0 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 46.9 | 0 | 1 | 0 | 0 | 0 | 2,023 |
51 | 35 | male | 1 | 0 | district | csf | 0 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 77.4 | 0 | 1 | 0 | 0 | 0 | 2,023 |
52 | 25 | male | 1 | 0 | district | urine | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 134.5 | 0 | 0 | 0 | 0 | 0 | 2,019 |
53 | 35 | female | 1 | 0 | health_centre | sputum | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 62.2 | 0 | 0 | 0 | 0 | 0 | 2,022 |
54 | 74 | male | 0 | 0 | district | sputum | 0 | 0 | none | 1 | 0 | 1 | 0 | not_done | mtb_not_detected | na | not_done | na | 0 | 0 | 1 | 0 | 0 | 37 | 0 | 0 | 0 | 0 | 0 | 2,022 |
55 | 56 | male | 0 | 0 | clinic | pleural_fluid | 1 | 1 | led_fluorescence | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 48 | 0 | 0 | 0 | 1 | 0 | 2,023 |
56 | 23 | female | 1 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 23.6 | 1 | 0 | 0 | 0 | 0 | 2,023 |
57 | 18 | male | 0 | 0 | tertiary | sputum | 0 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 235.5 | 0 | 0 | 0 | 0 | 0 | 2,021 |
58 | 40 | female | 0 | 0 | health_centre | sputum_induced | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 58 | 0 | 0 | 0 | 1 | 0 | 2,023 |
59 | 18 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 48.9 | 0 | 0 | 0 | 0 | 0 | 2,021 |
60 | 56 | male | 0 | 1 | health_centre | urine | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 136.1 | 0 | 0 | 0 | 0 | 0 | 2,020 |
61 | 28 | female | 0 | 0 | health_centre | csf | 0 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 119.9 | 0 | 0 | 0 | 1 | 0 | 2,023 |
62 | 55 | male | 1 | 0 | clinic | urine | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 98.4 | 0 | 1 | 0 | 1 | 0 | 2,023 |
63 | 35 | female | 0 | 1 | clinic | sputum | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 177.2 | 0 | 1 | 0 | 0 | 0 | 2,023 |
64 | 57 | male | 0 | 1 | health_centre | sputum | 0 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 83.8 | 0 | 0 | 0 | 0 | 0 | 2,020 |
65 | 36 | male | 1 | 0 | tertiary | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 42.1 | 0 | 0 | 0 | 0 | 0 | 2,019 |
66 | 32 | female | 1 | 0 | health_centre | csf | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 52.6 | 0 | 0 | 0 | 1 | 0 | 2,022 |
67 | 46 | male | 0 | 0 | clinic | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 39.1 | 0 | 1 | 0 | 0 | 0 | 2,021 |
68 | 33 | male | 0 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 57.6 | 0 | 1 | 0 | 0 | 0 | 2,021 |
69 | 52 | female | 1 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 30.9 | 0 | 0 | 0 | 0 | 0 | 2,022 |
70 | 28 | female | 0 | 1 | tertiary | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 62.4 | 0 | 0 | 0 | 0 | 0 | 2,023 |
71 | 43 | female | 1 | 0 | health_centre | sputum | 0 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 111.4 | 0 | 0 | 0 | 0 | 0 | 2,022 |
72 | 29 | female | 0 | 0 | health_centre | sputum_induced | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 1 | 0 | 0 | 75.4 | 0 | 0 | 0 | 0 | 0 | 2,020 |
73 | 29 | female | 1 | 0 | clinic | sputum_induced | 1 | 0 | none | 0 | 0 | 0 | 1 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 1 | 71.1 | 0 | 0 | 0 | 0 | 0 | 2,019 |
74 | 56 | female | 0 | 0 | tertiary | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 54.6 | 0 | 0 | 0 | 0 | 0 | 2,023 |
75 | 26 | male | 0 | 0 | district | sputum | 0 | 1 | led_fluorescence | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 71.8 | 0 | 0 | 0 | 0 | 0 | 2,020 |
76 | 43 | female | 1 | 0 | health_centre | gastric_aspirate | 1 | 1 | zn_light | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 9.4 | 1 | 1 | 0 | 0 | 0 | 2,021 |
77 | 41 | female | 1 | 0 | clinic | sputum_induced | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 42.3 | 0 | 0 | 0 | 0 | 0 | 2,019 |
78 | 46 | female | 1 | 0 | clinic | sputum_induced | 1 | 1 | led_fluorescence | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 77.6 | 0 | 0 | 0 | 0 | 0 | 2,023 |
79 | 18 | male | 0 | 0 | health_centre | urine | 0 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 179.2 | 0 | 1 | 0 | 0 | 0 | 2,021 |
80 | 26 | female | 1 | 0 | district | other | 1 | 1 | led_fluorescence | 0 | 1 | 1 | 0 | negative | not_done | na | negative | liquid_mgit | 0 | 0 | 0 | 0 | 0 | 47.8 | 0 | 1 | 0 | 0 | 0 | 2,023 |
81 | 85 | female | 0 | 0 | tertiary | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 72.5 | 0 | 1 | 0 | 0 | 0 | 2,022 |
82 | 47 | female | 1 | 1 | health_centre | sputum | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 47.9 | 0 | 1 | 0 | 0 | 0 | 2,019 |
83 | 85 | male | 0 | 0 | tertiary | urine | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 33.4 | 0 | 0 | 0 | 0 | 0 | 2,021 |
84 | 51 | male | 0 | 0 | district | csf | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 112.6 | 0 | 1 | 0 | 0 | 0 | 2,022 |
85 | 36 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 27 | 0 | 0 | 0 | 0 | 0 | 2,021 |
86 | 27 | male | 0 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 53.3 | 0 | 0 | 0 | 0 | 0 | 2,022 |
87 | 16 | female | 0 | 0 | clinic | pleural_fluid | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 1 | 26.8 | 0 | 1 | 0 | 1 | 0 | 2,023 |
88 | 17 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 1 | 0 | 0 | 35.9 | 0 | 0 | 0 | 0 | 0 | 2,023 |
89 | 27 | male | 1 | 0 | district | other | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 43 | 0 | 0 | 0 | 0 | 0 | 2,021 |
90 | 19 | male | 1 | 0 | clinic | sputum | 1 | 0 | none | 1 | 0 | 0 | 0 | not_done | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 14.7 | 1 | 0 | 0 | 0 | 0 | 2,023 |
91 | 32 | female | 0 | 0 | health_centre | other | 1 | 0 | none | 0 | 0 | 1 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 189.3 | 0 | 1 | 0 | 0 | 0 | 2,023 |
92 | 30 | male | 1 | 0 | district | other | 1 | 1 | zn_light | 1 | 0 | 0 | 0 | negative | mtb_not_detected | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 42.3 | 0 | 0 | 0 | 0 | 0 | 2,019 |
93 | 53 | male | 0 | 0 | district | pleural_fluid | 0 | 1 | led_fluorescence | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 38.1 | 0 | 1 | 0 | 0 | 0 | 2,020 |
94 | 35 | male | 0 | 0 | clinic | other | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 39.8 | 0 | 0 | 0 | 0 | 0 | 2,023 |
95 | 22 | female | 0 | 0 | tertiary | sputum | 0 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 78.7 | 0 | 0 | 0 | 0 | 0 | 2,023 |
96 | 31 | male | 0 | 0 | health_centre | sputum | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 24.1 | 0 | 0 | 0 | 0 | 0 | 2,020 |
97 | 41 | female | 1 | 0 | tertiary | other | 1 | 1 | zn_light | 0 | 0 | 0 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 35.9 | 0 | 0 | 0 | 0 | 0 | 2,022 |
98 | 33 | female | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 1 | 0 | 1 | 49.8 | 0 | 0 | 0 | 0 | 0 | 2,023 |
99 | 34 | male | 0 | 0 | district | sputum | 1 | 1 | zn_light | 0 | 0 | 1 | 0 | negative | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 36 | 0 | 0 | 0 | 0 | 0 | 2,021 |
100 | 50 | female | 0 | 0 | health_centre | sputum | 1 | 0 | none | 0 | 0 | 0 | 0 | not_done | not_done | na | not_done | na | 0 | 0 | 0 | 0 | 0 | 65.1 | 0 | 0 | 0 | 1 | 0 | 2,021 |
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in Data Studio
TB Laboratory Diagnostics
Abstract
Synthetic dataset modeling TB laboratory diagnostic services across three SSA scenarios. Captures GeneXpert, smear microscopy, culture, DST availability, test results, rifampicin resistance detection, turnaround times, and diagnostic yield. Parameterized from WHO TB reports and Xpert validation studies.
Parameterization Evidence
| Parameter | Value | Source | Year |
|---|---|---|---|
| Xpert sensitivity | 88% (vs culture) | Steingart et al. Cochrane | 2014 |
| Xpert specificity | 99% | Steingart et al. | 2014 |
| Smear sensitivity | 50-60% | Steingart et al. | 2014 |
| Xpert Rif-R sensitivity | 95% | Steingart et al. | 2014 |
| SSA TB burden | 2.5M cases/year (~25% global) | WHO Global TB Report | 2023 |
| Culture availability SSA | <10% facilities | WHO | 2023 |
| DST coverage | <5% new TB cases | WHO | 2023 |
Validation
Usage
from datasets import load_dataset
ds = load_dataset("electricsheepafrica/tb-laboratory-diagnostics", name="smear_primary")
df = ds['train'].to_pandas()
References
- WHO (2023). Global Tuberculosis Report
- Steingart KR et al. (2014). Xpert MTB/RIF. Cochrane. DOI: 10.1002/14651858.CD009593.pub3
- Albert H et al. (2016). Xpert roll-out. BMJ Glob Health. DOI: 10.1136/bmjgh-2016-000138
- Parsons LM et al. (2011). Lab diagnosis TB. Clin Microbiol Rev. DOI: 10.1128/CMR.00059-10
License
CC-BY-4.0
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