Update README.md
#1
by
elenagsierra - opened
README.md
CHANGED
|
@@ -1,16 +1,109 @@
|
|
| 1 |
---
|
| 2 |
license: cc-by-sa-3.0
|
| 3 |
---
|
| 4 |
-

|
| 5 |
-
|
| 6 |
# DivShift North American West Coast
|
| 7 |
Highlighting biases through partitions of volunteer-collected biodiversity data.
|
| 8 |
|
|
|
|
|
|
|
| 9 |
## Acquisition
|
| 10 |
-
|
| 11 |
|
| 12 |
## Features
|
| 13 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 14 |
|
| 15 |
## References
|
| 16 |
- iNaturalist: www.inaturalist.org
|
|
|
|
| 1 |
---
|
| 2 |
license: cc-by-sa-3.0
|
| 3 |
---
|
|
|
|
|
|
|
| 4 |
# DivShift North American West Coast
|
| 5 |
Highlighting biases through partitions of volunteer-collected biodiversity data.
|
| 6 |
|
| 7 |
+

|
| 8 |
+
|
| 9 |
## Acquisition
|
| 10 |
+
Sourced from iNaturalist open data on AWS.
|
| 11 |
|
| 12 |
## Features
|
| 13 |
+
|Column Name |Description |
|
| 14 |
+
|----------------------------|--------------------------------------------------------------------------------------------------------------------|
|
| 15 |
+
|state_name |State name |
|
| 16 |
+
|observation_uuid |ID of the observation |
|
| 17 |
+
|observer_id |ID of the iNaturalist observer |
|
| 18 |
+
|latitude |latitude (°) |
|
| 19 |
+
|longitude |longitude (°) |
|
| 20 |
+
|positional_accuracy |Accuracy of latitude and longitude (m) |
|
| 21 |
+
|taxon_id |Taxon ID of plant |
|
| 22 |
+
|quality_grade |Quality of observation |
|
| 23 |
+
|observed_on |Date of observation |
|
| 24 |
+
|ancestry |Higher-order identifiers of species taxonomy (e.g. genus, family) |
|
| 25 |
+
|rank_level |Name of rank ID of taxon |
|
| 26 |
+
|rank |Rank ID of taxon (e.g. 10 for species, 9 for genus) |
|
| 27 |
+
|name |Species name |
|
| 28 |
+
|date |Date of observation in Datetime form |
|
| 29 |
+
|state |State name |
|
| 30 |
+
|photo_uuid |Unique photo identifier on iNaturalist website |
|
| 31 |
+
|photo_id |Unique photo identifier on iNaturalist Open Data S3 bucket |
|
| 32 |
+
|extension |The photo extension |
|
| 33 |
+
|license |What creative commons license the photo is shared under |
|
| 34 |
+
|width |Width of image |
|
| 35 |
+
|height |Height of image |
|
| 36 |
+
|position |For a given observation with more than one associated photo, what is the order of the given image in the observation|
|
| 37 |
+
|l3_ecoregion |L3 ecoregion name |
|
| 38 |
+
|l2_ecoregion |L2 ecoregion name |
|
| 39 |
+
|l1_ecoregion |L1 ecoregion name |
|
| 40 |
+
|l4_ecoregion |L4 ecoregion name |
|
| 41 |
+
|bioclim_14 |Precipitation of Driest Month |
|
| 42 |
+
|bioclim_13 |Precipitation of Wettest Month |
|
| 43 |
+
|bioclim_8 |Mean Temperature of Wettest Quarter |
|
| 44 |
+
|bioclim_1 |Annual Mean Temperature |
|
| 45 |
+
|bioclim_6 |Min Temperature of Coldest Month |
|
| 46 |
+
|bioclim_12 |Annual Precipitation |
|
| 47 |
+
|bioclim_15 |Precipitation Seasonality (Coefficient of Variation) |
|
| 48 |
+
|bioclim_7 |Temperature Annual Range (BIO5-BIO6) |
|
| 49 |
+
|bioclim_9 |Mean Temperature of Driest Quarter |
|
| 50 |
+
|bioclim_3 |Isothermality (BIO2/BIO7) (×100) |
|
| 51 |
+
|bioclim_4 |Temperature Seasonality (standard deviation ×100) |
|
| 52 |
+
|bioclim_16 |Precipitation of Wettest Quarter |
|
| 53 |
+
|bioclim_11 |Mean Temperature of Coldest Quarter |
|
| 54 |
+
|bioclim_18 |Precipitation of Warmest Quarter |
|
| 55 |
+
|bioclim_5 |Max Temperature of Warmest Month |
|
| 56 |
+
|bioclim_2 |Mean Diurnal Range (Mean of monthly (max temp - min temp)) |
|
| 57 |
+
|bioclim_19 |Precipitation of Coldest Quarter |
|
| 58 |
+
|bioclim_10 |Mean Temperature of Warmest Quarter |
|
| 59 |
+
|bioclim_17 |Precipitation of Driest Quarter |
|
| 60 |
+
|land_use |North American Environmental Atlas Land Cover |
|
| 61 |
+
|soil_type |Harmonized World Soil Database V 2.0 |
|
| 62 |
+
|supervised |Whether the image is labeled |
|
| 63 |
+
|single_image |Whether this image is a unique observation |
|
| 64 |
+
|year |Year image taken |
|
| 65 |
+
|human_footprint |Human Footprint index (Wilderness to Modified) |
|
| 66 |
+
|not_city_nature |Train and Test images taken outside of the city nature challenge |
|
| 67 |
+
|city_nature |Train and Test images taken in the city nature challenge |
|
| 68 |
+
|alaska_socioeco |Train and Test images in Alaska |
|
| 69 |
+
|arizona_socioeco |Train and Test images in Arizona |
|
| 70 |
+
|baja_california_socioeco |Train and Test images in Baja California |
|
| 71 |
+
|baja_california_sur_socioeco|Train and Test images in Baja California Sur |
|
| 72 |
+
|british_columbia_socioeco |Train and Test images in British Columbia |
|
| 73 |
+
|california_socioeco |Train and Test images in California |
|
| 74 |
+
|nevada_socioeco |Train and Test images in Nevada |
|
| 75 |
+
|oregon_socioeco |Train and Test images in Oregon |
|
| 76 |
+
|sonora_socioeco |Train and Test images in Sonora |
|
| 77 |
+
|washington_socioeco |Train and Test images in Washington |
|
| 78 |
+
|yukon_socioeco |Train and Test images in Yukon |
|
| 79 |
+
|obs_engaged |Train and Test images taken by Engaged Observers (users with more than 1,000 unique observations) |
|
| 80 |
+
|obs_casual |Train and Test images taken by Casual Observers (users with less than 50 unique observations) |
|
| 81 |
+
|spatial_wilderness |Train and Test images from Wilderness regions |
|
| 82 |
+
|spatial_modified |Train and Test images from Human Modified regions |
|
| 83 |
+
|inat2021 |Train and Test images from iNat21 |
|
| 84 |
+
|inat2021mini |Train and Test images from iNat21 Mini |
|
| 85 |
+
|imagenet |Train and Test images from ImageNet |
|
| 86 |
+
|spatial_split |Spatially stratified sampled Train and Test images |
|
| 87 |
+
|taxonomic_balanced |Taxonomically balanced Train and Test images |
|
| 88 |
+
|taxonomic_unbalanced |Taxonomicall unbalance Train and Test images |
|
| 89 |
+
|
| 90 |
+
## Citation
|
| 91 |
+
```
|
| 92 |
+
@article{Sierra_Gillespie_Soltani_Exposito-Alonso_Kattenborn_2025,
|
| 93 |
+
author = {Sierra, Elena and Gillespie, Lauren E. and Soltani, Salim and Exposito-Alonso, Moises and Kattenborn, Teja},
|
| 94 |
+
doi = {10.1609/aaai.v39i27.35060},
|
| 95 |
+
journal = {Proceedings of the AAAI Conference on Artificial Intelligence},
|
| 96 |
+
month = {Apr.},
|
| 97 |
+
number = {27},
|
| 98 |
+
pages = {28386-28396},
|
| 99 |
+
title = {DivShift: Exploring Domain-Specific Distribution Shifts in Large-Scale, Volunteer-Collected Biodiversity Datasets},
|
| 100 |
+
url = {https://ojs.aaai.org/index.php/AAAI/article/view/35060},
|
| 101 |
+
volume = {39},
|
| 102 |
+
year = {2025},
|
| 103 |
+
bdsk-url-1 = {https://ojs.aaai.org/index.php/AAAI/article/view/35060},
|
| 104 |
+
bdsk-url-2 = {https://doi.org/10.1609/aaai.v39i27.35060}
|
| 105 |
+
}
|
| 106 |
+
```
|
| 107 |
|
| 108 |
## References
|
| 109 |
- iNaturalist: www.inaturalist.org
|