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  1. .gitattributes +97 -0
  2. data/__notebook__.ipynb +0 -0
  3. data/gdc_data_organized/1b4cfad1-e353-4411-97b6-2b7b9309e95e/1300c740-a254-43e6-b988-9438a35a622a.mirbase21.isoforms.quantification.txt +0 -0
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  13. data/gdc_data_organized/2dc1cec9-925a-417f-9e21-3c2143e711b4/CROZE_p_TCGA_254_256_255_N_GenomeWideSNP_6_B06_1301352.nocnv_grch38.seg.v2.txt +91 -0
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2020
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2022
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2020
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2029
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+ <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
139
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
140
+ </bio:aliquot>
141
+ </bio:aliquots>
142
+ <bio:protocols>
143
+ <bio:protocol>
144
+ <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">aDNA Preparation Type</bio:experimental_protocol_type>
145
+ <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
146
+ <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
147
+ </bio:protocol>
148
+ </bio:protocols>
149
+ <bio:dna>
150
+ <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
151
+ <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
152
+ </bio:dna>
153
+ <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">PicoGreen</bio:spectrophotometer_method>
154
+ </bio:analyte>
155
+ <bio:analyte>
156
+ <admin:additional_studies/>
157
+ <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2</bio:subportion_sequence>
158
+ <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">R</bio:analyte_type_id>
159
+ <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">RNA</bio:analyte_type>
160
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
161
+ <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.78</bio:a260_a280_ratio>
162
+ <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
163
+ <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
164
+ <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-12R</bio:bcr_analyte_barcode>
165
+ <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">058DD490-91A0-471F-A421-C661BE9F5978</bio:bcr_analyte_uuid>
166
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
167
+ <bio:aliquots>
168
+ <bio:aliquot>
169
+ <admin:additional_studies/>
170
+ <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A22I</bio:plate_id>
171
+ <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">13</bio:center_id>
172
+ <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30</bio:day_of_shipment>
173
+ <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
174
+ <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_shipment>
175
+ <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-12R-A22I-13</bio:bcr_aliquot_barcode>
176
+ <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">ECB7EC8A-A316-44DA-BAB7-AEF91930F4DD</bio:bcr_aliquot_uuid>
177
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
178
+ <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">3.00</bio:quantity>
179
+ <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">20.00</bio:volume>
180
+ <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">C</bio:plate_row>
181
+ <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">3</bio:plate_column>
182
+ <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0118956165</bio:biospecimen_barcode_bottom>
183
+ <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
184
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
185
+ </bio:aliquot>
186
+ <bio:aliquot>
187
+ <admin:additional_studies/>
188
+ <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A22K</bio:plate_id>
189
+ <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">07</bio:center_id>
190
+ <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30</bio:day_of_shipment>
191
+ <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
192
+ <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_shipment>
193
+ <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-12R-A22K-07</bio:bcr_aliquot_barcode>
194
+ <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">BFEDC051-75DD-44F8-ADD4-40EC7EABF0B0</bio:bcr_aliquot_uuid>
195
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.15</bio:concentration>
196
+ <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1.95</bio:quantity>
197
+ <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">13.00</bio:volume>
198
+ <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">C</bio:plate_row>
199
+ <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">3</bio:plate_column>
200
+ <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0122971767</bio:biospecimen_barcode_bottom>
201
+ <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
202
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
203
+ </bio:aliquot>
204
+ </bio:aliquots>
205
+ <bio:protocols>
206
+ <bio:protocol>
207
+ <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">mirVana (Allprep DNA) RNA</bio:experimental_protocol_type>
208
+ <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
209
+ <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
210
+ </bio:protocol>
211
+ </bio:protocols>
212
+ <bio:rna>
213
+ <bio:ratio_28s_18s cde="" xsd_ver="1.8" procurement_status="Completed" owner="">1.00</bio:ratio_28s_18s>
214
+ <bio:rinvalue cde="" xsd_ver="1.8" procurement_status="Completed" owner="">8.20</bio:rinvalue>
215
+ </bio:rna>
216
+ <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Completed" owner="">UV Spec</bio:spectrophotometer_method>
217
+ </bio:analyte>
218
+ <bio:analyte>
219
+ <admin:additional_studies/>
220
+ <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">2</bio:subportion_sequence>
221
+ <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">W</bio:analyte_type_id>
222
+ <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">Repli-G (Qiagen) DNA</bio:analyte_type>
223
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
224
+ <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
225
+ <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
226
+ <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
227
+ <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-12W</bio:bcr_analyte_barcode>
228
+ <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">C6C52525-2C58-4155-8A83-9ABF392B9F0F</bio:bcr_analyte_uuid>
229
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
230
+ <bio:aliquots>
231
+ <bio:aliquot>
232
+ <admin:additional_studies/>
233
+ <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A234</bio:plate_id>
234
+ <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">09</bio:center_id>
235
+ <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">11</bio:day_of_shipment>
236
+ <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">07</bio:month_of_shipment>
237
+ <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_shipment>
238
+ <bio:bcr_aliquot_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-12W-A234-09</bio:bcr_aliquot_barcode>
239
+ <bio:bcr_aliquot_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1942ADF9-A063-4A94-9F1B-154F768529D7</bio:bcr_aliquot_uuid>
240
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.50</bio:concentration>
241
+ <bio:quantity units="ug" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">40.00</bio:quantity>
242
+ <bio:volume units="ul" cde="" xsd_ver="2.6" procurement_status="Completed" owner="">80.00</bio:volume>
243
+ <bio:plate_row cde="" xsd_ver="2.3" procurement_status="Completed" owner="">D</bio:plate_row>
244
+ <bio:plate_column cde="" xsd_ver="2.3" procurement_status="Completed" owner="">2</bio:plate_column>
245
+ <bio:biospecimen_barcode_bottom cde="" xsd_ver="2.3" procurement_status="Completed" owner="">0132270865</bio:biospecimen_barcode_bottom>
246
+ <bio:source_center cde="" xsd_ver="2.4" procurement_status="Completed" owner="">23</bio:source_center>
247
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
248
+ </bio:aliquot>
249
+ </bio:aliquots>
250
+ <bio:protocols>
251
+ <bio:protocol>
252
+ <bio:experimental_protocol_type cde="" xsd_ver="1.8" procurement_status="Completed" owner="">Repli-G</bio:experimental_protocol_type>
253
+ <bio:protocol_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
254
+ <bio:protocol_file_name cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
255
+ </bio:protocol>
256
+ </bio:protocols>
257
+ <bio:dna>
258
+ <bio:normal_tumor_genotype_match cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:normal_tumor_genotype_match>
259
+ <bio:pcr_amplification_successful cde="" xsd_ver="1.8" procurement_status="Completed" owner="">YES</bio:pcr_amplification_successful>
260
+ </bio:dna>
261
+ <bio:spectrophotometer_method cde="" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
262
+ </bio:analyte>
263
+ </bio:analytes>
264
+ <bio:slides>
265
+ <bio:slide>
266
+ <admin:additional_studies/>
267
+ <bio:section_location cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TOP</bio:section_location>
268
+ <bio:number_proliferating_cells cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
269
+ <bio:percent_tumor_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">95</bio:percent_tumor_cells>
270
+ <bio:percent_tumor_nuclei cde="2841225" xsd_ver="1.8" procurement_status="Completed" owner="">80</bio:percent_tumor_nuclei>
271
+ <bio:percent_normal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_normal_cells>
272
+ <bio:percent_necrosis cde="2841237" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_necrosis>
273
+ <bio:percent_stromal_cells cde="" xsd_ver="1.8" procurement_status="Completed" owner="">5</bio:percent_stromal_cells>
274
+ <bio:percent_inflam_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
275
+ <bio:percent_lymphocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_lymphocyte_infiltration>
276
+ <bio:percent_monocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_monocyte_infiltration>
277
+ <bio:percent_granulocyte_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
278
+ <bio:percent_neutrophil_infiltration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0</bio:percent_neutrophil_infiltration>
279
+ <bio:percent_eosinophil_infiltration cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
280
+ <shared:bcr_slide_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-01-TSA</shared:bcr_slide_barcode>
281
+ <shared:bcr_slide_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">AF989587-1EF9-48A3-8055-B45BDFDB81FA</shared:bcr_slide_uuid>
282
+ <shared:image_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-AC-A3W6-01A-01-TSA.AF989587-1EF9-48A3-8055-B45BDFDB81FA.svs</shared:image_file_name>
283
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
284
+ </bio:slide>
285
+ </bio:slides>
286
+ <bio:LCE cde="3251491" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
287
+ </bio:portion>
288
+ </bio:portions>
289
+ <bio:tumor_pathology/>
290
+ <bio:method_of_sample_procurement cde="3103514" xsd_ver="2.3" procurement_status="Not Available" owner=""/>
291
+ <bio_shared:other_method_of_sample_procurement cde="2006730" xsd_ver="2.5" procurement_status="Not Available" owner=""/>
292
+ <shared:days_to_sample_procurement cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
293
+ <bio:pathology_report_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">B52E150F-5B34-482A-84E7-1739B9AC09B7</bio:pathology_report_uuid>
294
+ <bio:pathology_report_file_name cde="" xsd_ver="2.6" procurement_status="Completed" owner="">TCGA-AC-A3W6.B52E150F-5B34-482A-84E7-1739B9AC09B7.pdf</bio:pathology_report_file_name>
295
+ <bio:diagnostic_slides>
296
+ <admin:additional_studies/>
297
+ <bio:ffpe_slide_uuid cde="" xsd_ver="2.4" procurement_status="Completed" owner="">88CC534C-F032-4E5D-9CC4-4BB50AA46880</bio:ffpe_slide_uuid>
298
+ </bio:diagnostic_slides>
299
+ </bio:sample>
300
+ <bio:sample>
301
+ <admin:additional_studies/>
302
+ <bio:sample_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">10</bio:sample_type_id>
303
+ <bio:vial_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A</bio:vial_number>
304
+ <bio:biospecimen_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
305
+ <bio:sample_type cde="" xsd_ver="2.4" procurement_status="Completed" owner="">Blood Derived Normal</bio:sample_type>
306
+ <bio:longest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
307
+ <bio:intermediate_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
308
+ <bio:shortest_dimension cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
309
+ <bio:initial_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
310
+ <bio:current_weight cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
311
+ <bio:freezing_method cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
312
+ <bio:oct_embedded cde="" xsd_ver="1.8" procurement_status="Completed" owner="">false</bio:oct_embedded>
313
+ <bio:preservation_method cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
314
+ <bio:tissue_type cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
315
+ <bio:composition cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
316
+ <bio:tumor_descriptor cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
317
+ <bio:days_to_collection precision="day" procurement_status="Completed" cde="" xsd_ver="2.6" owner="">101</bio:days_to_collection>
318
+ <bio:time_between_clamping_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
319
+ <bio:time_between_excision_and_freezing cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
320
+ <bio:bcr_sample_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-10A</bio:bcr_sample_barcode>
321
+ <bio:bcr_sample_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">3C233C9C-AB69-40EC-8009-5ECEAA4CC2BB</bio:bcr_sample_uuid>
322
+ <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
323
+ <bio:portions>
324
+ <bio:portion>
325
+ <admin:additional_studies/>
326
+ <bio:portion_number cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:portion_number>
327
+ <bio:portion_sequence cde="" xsd_ver="2.6" procurement_status="Completed" owner="">1</bio:portion_sequence>
328
+ <bio:day_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">07</bio:day_of_creation>
329
+ <bio:month_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_creation>
330
+ <bio:year_of_creation cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_creation>
331
+ <bio:weight cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2.00</bio:weight>
332
+ <bio:bcr_portion_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-10A-01</bio:bcr_portion_barcode>
333
+ <bio:bcr_portion_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">1021FCCB-9398-4BE2-BD3A-3A61A5956269</bio:bcr_portion_uuid>
334
+ <bio:is_ffpe cde="4170557" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_ffpe>
335
+ <bio:analytes>
336
+ <bio:analyte>
337
+ <admin:additional_studies/>
338
+ <bio:subportion_sequence cde="" xsd_ver="2.6" procurement_status="Not Available" owner=""/>
339
+ <bio:analyte_type_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">D</bio:analyte_type_id>
340
+ <bio:analyte_type cde="" xsd_ver="1.10" procurement_status="Completed" owner="">DNA</bio:analyte_type>
341
+ <bio:concentration cde="" xsd_ver="1.8" procurement_status="Completed" owner="">0.14</bio:concentration>
342
+ <bio:a260_a280_ratio cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
343
+ <bio:gel_image_file cde="" xsd_ver="1.8" procurement_status="Completed" owner="">https://sharedoc.nchri.org/tcga-bcr/default.aspx</bio:gel_image_file>
344
+ <bio:well_number cde="" xsd_ver="1.8" procurement_status="Not Available" owner=""/>
345
+ <bio:bcr_analyte_barcode cde="" xsd_ver="1.8" procurement_status="Completed" owner="">TCGA-AC-A3W6-10A-01D</bio:bcr_analyte_barcode>
346
+ <bio:bcr_analyte_uuid cde="" xsd_ver="2.3" procurement_status="Completed" owner="">D991C47A-80D3-4080-ABC3-DDFD4D2B752E</bio:bcr_analyte_uuid>
347
+ <bio:is_derived_from_ffpe cde="4170571" xsd_ver="2.6" procurement_status="Completed" owner="">NO</bio:is_derived_from_ffpe>
348
+ <bio:aliquots>
349
+ <bio:aliquot>
350
+ <admin:additional_studies/>
351
+ <bio:plate_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">A229</bio:plate_id>
352
+ <bio:center_id cde="" xsd_ver="2.4" procurement_status="Completed" owner="">01</bio:center_id>
353
+ <bio:day_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">30</bio:day_of_shipment>
354
+ <bio:month_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">05</bio:month_of_shipment>
355
+ <bio:year_of_shipment cde="" xsd_ver="1.8" procurement_status="Completed" owner="">2012</bio:year_of_shipment>
356
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357
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data/gdc_data_organized/2dc1cec9-925a-417f-9e21-3c2143e711b4/CROZE_p_TCGA_254_256_255_N_GenomeWideSNP_6_B06_1301352.nocnv_grch38.seg.v2.txt ADDED
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data/gdc_data_organized/2e1e3bf0-1708-4b65-936c-48b89eb8966a/TCGA-BRCA.4b29c2ad-b966-4f56-b97b-35f5d4aea434.ascat3.allelic_specific.seg.txt ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ GDC_Aliquot Chromosome Start End Copy_Number Major_Copy_Number Minor_Copy_Number
2
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+ AGID00315 1795 ab178407 Set163 ATR_pS428 0.2595638
45
+ AGID00268 1569 ab97508 Set163 ATRX 0.2289374
46
+ AGID00391 2332 14475 Set163 Aurora-A -0.12664
47
+ AGID00392 2333 2914 Set163 Aurora-ABC_pT288_pT232_pT198 -0.04129998
48
+ AGID02195 2512 MA5-27890 Set163 Aurora-B -0.03931629
49
+ AGID00215 1271 8661 Old AXL 0.30895
50
+ AGID02143 2449 8457 Set163 b-Actin 0.1815597
51
+ AGID00179 1170 9565 Set163 b-Catenin_pT41_S45 -0.09735498
52
+ AGID00301 1725 14058 Set163 B7-H3 -0.6893709
53
+ AGID00302 1726 14572 Set163 B7-H4 -0.2790453
54
+ AGID00008 63 9291 Old BAD_pS112 0.005165
55
+ AGID00009 71 1542-1/ab32371 Old BAK -0.48905
56
+ AGID00192 1207 sc-28383 Old BAP1C4 -0.080422
57
+ AGID00010 73 2772 Old BAX -0.69509
58
+ AGID00433 80 M0887 Old BCL2 -0.25746
59
+ AGID00219 1299 PAB8528 Old BCL2A1 -0.00676
60
+ AGID00012 84 1018-1 Old BCLXL -0.477595
61
+ AGID00377 87 sc-10086 Old BECLIN 0.232675
62
+ AGID00011 75 9562 Old BETACATENIN -0.547105
63
+ AGID00013 88 1008-1/ab32060 Old BID -0.1589
64
+ AGID00180 90 1036-1/ab32158 Old BIM -0.74404
65
+ AGID00221 1311 610978 Set163 BiP-GRP78 -0.1592055
66
+ AGID00373 2194 07-507 Set163 BMK1-Erk5_pT218_Y220 -0.05052995
67
+ AGID00355 92 1647/ab33899 Old BRAF -0.639045
68
+ AGID00014 94 2696 Old BRAF_pS445 0.036532
69
+ AGID00445 761 9012 Old BRCA2 0.02077415
70
+ AGID00266 1567 13440 Old BRD4 -0.1374205
71
+ AGID00168 1146 2865 Set163 c-Abl_pY412 -0.02809072
72
+ AGID00278 1615 3130 Set163 c-IAP2 -0.1672451
73
+ AGID00345 1990 5649 Old CA9 NA
74
+ AGID00265 1565 2862 Old CABL 0.0838725
75
+ AGID00429 2407 2679 Set163 Calnexin 0.06062976
76
+ AGID00176 1165 9496 Set163 Caspase-8-cleaved -0.06190507
77
+ AGID00623 111 9665 Old CASPASE3 0.007859
78
+ AGID00015 109 9491 Old CASPASE7CLEAVEDD198 -0.986825
79
+ AGID00118 951 9746 Old CASPASE8 0.0941385
80
+ AGID00537 935 551246 Old CASPASE9 NA
81
+ AGID00016 114 3238 Old CAVEOLIN1 -0.782345
82
+ AGID00358 2100 ab76000 Set163 CD134 -0.1293614
83
+ AGID00303 1737 826701 Set163 CD171 0.47761
84
+ AGID00410 125 1632-1/ab78237 Old CD20 -0.221635
85
+ AGID00220 1308 ab28340 Old CD26 0.1166845
86
+ AGID00191 1206 610467 Set163 CD29 0.04947966
87
+ AGID00017 127 M0823 Old CD31 0.201655
88
+ AGID00369 2174 ab108403 Set163 CD38 -0.3081
89
+ AGID00359 2104 ab133616 Set163 CD4 -0.8559212
90
+ AGID00411 1398 3570 Set163 CD44 -0.5296151
91
+ AGID00237 1352 M070101-2 Set163 CD45 -0.2493602
92
+ AGID00115 937 611016 Old CD49B 0.081056
93
+ AGID02171 2482 91882 Set163 CD86 0.01806
94
+ AGID00329 1873 4688 Set163 cdc25C 0.131025
95
+ AGID00227 1332 4651 Set163 Cdc42 -0.0370202
96
+ AGID00422 2396 3387 Set163 Cdc6 0.1725899
97
+ AGID00501 1007 9112 Old CDK1 -0.1015915
98
+ AGID00293 1658 ab32384 Set163 CDK1_pT14 0.008260022
99
+ AGID00314 1783 4539 Old CDK1_pY15 0.047456
100
+ AGID00423 2397 8064 Set163 CDT1 -0.3639254
101
+ AGID02101 2348 15102 Set163 cGAS 0.06684002
102
+ AGID00447 2410 13460 Set163 CHD1L 0.3388382
103
+ AGID00189 1203 2360 Old CHK1 -0.1107715
104
+ AGID00234 1348 ab79758 Old CHK1_pS296 0.0404425
105
+ AGID00107 903 2348 Old CHK1_pS345 -0.130217
106
+ AGID00018 146 3440 Old CHK2 -0.0176775
107
+ AGID00019 147 2197 Old CHK2_pT68 0.247105
108
+ AGID00527 2078 4952 Old CIAP 0.0140895
109
+ AGID00350 2018 3793 Set163 CIITA -0.22511
110
+ AGID00434 155 9164 Old CJUN_pS73 0.172635
111
+ AGID00020 157 1522-1/ab32363 Old CKIT -0.068114
112
+ AGID00400 852 NB100-91714 Old CLAUDIN7 0.3449
113
+ AGID00466 726 3127 Old CMET 0.030655
114
+ AGID00079 727 3129 Old CMET_pY1235 -0.0243615
115
+ AGID00167 161 9402 Old CMYC -0.045655
116
+ AGID00292 1656 11130-1-AP Old COG3 0.640795
117
+ AGID00021 171 sc-20649 Old COLLAGENVI 0.34244
118
+ AGID00141 1069 459230 Old COMPLEXIISUBUNIT30 NA
119
+ AGID00267 1568 3512 Set163 Connexin-43 -0.1957003
120
+ AGID00269 1571 6434 Set163 Coup-TFII -0.5466
121
+ AGID00150 1116 4850 Set163 Cox-IV 0.5400994
122
+ AGID00195 1218 4842 Set163 Cox2 -0.19149
123
+ AGID00188 803 05-739 Old CRAF -0.1249333
124
+ AGID00022 179 9427 Old CRAF_pS338 -0.0588155
125
+ AGID00023 181 9197 Set163 Creb -0.4690211
126
+ AGID00393 2334 9198 Set163 CREB_pS133 -0.1736778
127
+ AGID00365 2155 4980 Set163 CSK -0.15746
128
+ AGID00367 2160 9201 Set163 CtIP -0.4567353
129
+ AGID00536 2096 ab107198 Old CTLA4 NA
130
+ AGID00025 198 2936 Set163 Cyclin-D3 0.1543899
131
+ AGID00024 192 1495-1/ab32053 Old CYCLINB1 -0.484765
132
+ AGID00382 194 sc-718 Old CYCLIND1 0.0596075
133
+ AGID00437 199 sc-25303 Old CYCLINE1 -0.627175
134
+ AGID00449 202 1142-1 Old CYCLINE2 -0.47786
135
+ AGID00209 1257 ab110324 Set163 Cyclophilin-F 1.13594
136
+ AGID00247 1379 ab48389 Set163 D-a-Tubulin 0.02112501
137
+ AGID00308 1770 GTX10524 Set163 DAPK1_pS308 -0.09496004
138
+ AGID00304 1744 ab51601 Set163 DAPK2 0.009644793
139
+ AGID00343 1980 6998 Set163 DDB-1 -0.1307401
140
+ AGID00427 2402 5583 Set163 DDR1 -0.07914575
141
+ AGID00428 2403 SAB4504671 Set163 DDR1_pY513 0.22309
142
+ AGID00532 1273 Bast Lab Old DIRAS3 0.26088
143
+ AGID00104 891 ab76008 Old DJ1 -0.0851521
144
+ AGID02146 2452 4658 Set163 DM-Histone-H3 -0.1975854
145
+ AGID00386 1397 ab32521 Set163 DM-K9-Histone-H3 -0.01244502
146
+ AGID00352 2030 14649 Set163 DNA-Ligase-IV 0.1235548
147
+ AGID00407 2371 13609 Set163 DNA_POLG 0.6639999
148
+ AGID00399 2344 5032 Set163 DNMT1 0.05263988
149
+ AGID00409 2373 5391 Set163 DRP1 -0.2431416
150
+ AGID00253 1406 5149 Old DUSP4 1.03259
151
+ AGID00334 1936 ab76310 Set163 DUSP6 0.2478197
152
+ AGID00116 940 3218 Old DVL3 -0.1743
153
+ AGID00211 1261 sc-251 Old E2F1 NA
154
+ AGID00148 1099 3195 Old ECADHERIN 0.3461
155
+ AGID00135 1060 2332 Old EEF2 -0.255927
156
+ AGID00136 1061 3692 Old EEF2K -0.22876
157
+ AGID00152 1120 2232 Old EGFR -0.499605
158
+ AGID00450 217 2234 Old EGFR_pY1068 2.53865
159
+ AGID00026 221 1124-1/ab32578 Old EGFR_pY1173 -0.1176485
160
+ AGID00078 722 9742 Old EIF4E -0.0287245
161
+ AGID00328 1871 ab76256 Set163 eIF4E_pS209 0.0675897
162
+ AGID00154 1124 2498 Old EIF4G -0.0829435
163
+ AGID00027 228 9181 Set163 Elk1_pS383 -0.447075
164
+ AGID00235 1350 M061329-2 Set163 EMA -0.1069304
165
+ AGID00394 2337 3810 Set163 Enolase-1 -0.3297452
166
+ AGID00395 2338 8171 Set163 Enolase-2 -0.03116498
167
+ AGID00196 1219 GTX629542 Old ENY2 0.117351
168
+ AGID00438 1849 A302-024A Set163 EphA2 -0.10254
169
+ AGID00552 2422 6347 Set163 EphA2_pS897 0.01999002
170
+ AGID00553 2423 12677 Set163 EphA2_pY588 0.4195415
171
+ AGID00075 693 556347 Old EPPK1 1.92085
172
+ AGID00335 238 RM-9101 Old ERALPHA -0.73825
173
+ AGID00029 241 1091-1/ab32396 Old ERALPHA_pS118 -0.463775
174
+ AGID00240 247 MS-671 Old ERCC1 -0.0972395
175
+ AGID00239 1355 11331-1-AP Old ERCC5 0.0382449
176
+ AGID00484 249 sc-154 Old ERK2 -0.135645
177
+ AGID00372 2193 3552 Set163 Erk5 0.03884002
178
+ AGID00405 2369 13826 Set163 ERRalpha 0.3251149
179
+ AGID00187 1200 A303-501A Old ETS1 -0.79443
180
+ AGID00511 2492 2593 Set163 EVI1 -0.1198756
181
+ AGID00485 1284 4905 Old EZH2 NA
182
+ AGID00030 252 1700-1/ab40794 Set163 FAK -0.41256
183
+ AGID02151 2457 8556 Set163 FAK_pY397 0.6281034
184
+ AGID00171 1156 3180 Old FASN 3.22035
185
+ AGID00356 2085 500-P18/10775-082 Set163 FGF-basic -0.442575
186
+ AGID00031 262 1574-1/ab45688 Old FIBRONECTIN 0.822
187
+ AGID00339 1959 4403 Set163 FN14 0.06240502
188
+ AGID02152 2458 20459 Old FOXM1 -0.212565
189
+ AGID00378 269 9467 Old FOXO3A -0.033024
190
+ AGID02197 2515 orb6051 Old FOXO3A_pS318S321 -0.01760918
191
+ AGID02167 2475 PA5-64616 Set163 FRS2-alpha_pY196 0.35347
192
+ AGID02213 2575 ab124892 Set163 FTO 0.12694
193
+ AGID02141 2446 12263 Old G6PD 0.657395
194
+ AGID00117 943 3239 Old GAB2 0.0481085
195
+ AGID00412 274 AM4300 Old GAPDH -1.34025
196
+ AGID00086 764 558686 Old GATA3 1.90635
197
+ AGID00383 1578 4253 Old GATA6 0.353535
198
+ AGID00289 1634 12601-1-AP Set163 GCLC -0.705755
199
+ AGID00305 1745 ab124827 Set163 GCLM 0.09502002
200
+ AGID00212 1263 3305 Old GCN5L2 -0.43878
201
+ AGID00270 1579 3538 Set163 Gli1 0.1528096
202
+ AGID00263 1520 ab69838 Set163 Gli3 -0.1765011
203
+ AGID00548 2530 3660 Set163 Glucocorticoid-Receptor -1.106255
204
+ AGID00387 1617 12793 Set163 Glutamate-D1-2 0.1253189
205
+ AGID00262 1491 ab156876 Set163 Glutaminase 0.45126
206
+ AGID00319 1807 4275 Set163 Granzyme-B 0.1800749
207
+ AGID00368 2169 ab183737 Set163 GRB7 2.129669
208
+ AGID00396 2339 3593 Set163 Grp75 0.297265
209
+ AGID00174 1163 9315 Set163 GSK-3B 0.7070291
210
+ AGID00502 1082 9336 Old GSK3_pS9 1.37685
211
+ AGID00033 284 sc-7291 Old GSK3ALPHABETA 0.27138
212
+ AGID00034 285 9331 Old GSK3ALPHABETA_pS21S9 0.822795
213
+ AGID00129 1035 3886 Old GYS NA
214
+ AGID00130 1036 3891 Old GYS_pS641 NA
215
+ AGID01354 1342 9718 Set163 H2AX_pS139 0.009839977
216
+ AGID00363 1409 MA1-2022 Set163 H2AX_pS140 0.04454496
217
+ AGID00131 1038 MS-325-P1 Old HER2 3.2489
218
+ AGID00142 299 06-229 Old HER2_pY1248 2.60945
219
+ AGID00110 911 sc-285 Old HER3 0.0269155
220
+ AGID00080 728 4791 Old HER3_pY1289 0.16224
221
+ AGID00103 890 2573 Old HEREGULIN 0.073392
222
+ AGID00271 1582 11988 Set163 HES1 0.2946698
223
+ AGID00397 2340 2024 Set163 Hexokinase-I 0.5671998
224
+ AGID00442 1023 2867 Set163 Hexokinase-II 0.8134085
225
+ AGID00419 1402 610958 Old HIF1ALPHA NA
226
+ AGID00205 1250 ab1791 Set163 Histone-H3 -0.2825502
227
+ AGID00398 2341 3377 Set163 Histone-H3_pS10 0.06749489
228
+ AGID00332 1901 ab128959 Set163 HLA-DQA1 -1.057101
229
+ AGID00333 1902 14832-1-AP Set163 HMHA1 -1.31819
230
+ AGID00035 321 2402 Set163 HSP27 0.199235
231
+ AGID00036 323 2401 Set163 HSP27_pS82 0.16099
232
+ AGID00320 1808 12165 Set163 HSP60 0.3200048
233
+ AGID00037 325 4872 Old HSP70 -0.10922
234
+ AGID00366 2158 86630 Set163 IDO -0.6292455
235
+ AGID00197 1221 3024 Old IGF1R_pY1135Y1136 0.225105
236
+ AGID00038 335 3922 Old IGFBP2 0.813625
237
+ AGID00090 793 611504 Set163 IGFBP3 0.3378197
238
+ AGID00039 336 3027 Set163 IGFRb -0.87683
239
+ AGID00336 1949 12153 Set163 IL-6 -0.3357153
240
+ AGID02221 2583 57145 Set163 IMP3 0.1857599
241
+ AGID02153 2459 14543 Old INPP4B 0.97972
242
+ AGID00272 1586 3025 Set163 IR-b -0.33929
243
+ AGID00519 2519 4302 Set163 IRF-3 -0.1391547
244
+ AGID00520 2520 4947 Set163 IRF-3_pS396 0.1182995
245
+ AGID00223 1316 sc-497 Old IRF1 -0.203665
246
+ AGID00092 802 06-248 Old IRS1 -0.060607
247
+ AGID00040 371 4502 Set163 IRS2 -0.3902604
248
+ AGID00250 1394 sc-13157 Old JAB1 0.27469
249
+ AGID00256 1413 ab109536 Set163 Jagged1 -0.1517445
250
+ AGID00177 1166 3230 Old JAK2 -0.25381
251
+ AGID00758 377 4671 Old JNK_pT183Y185 0.384685
252
+ AGID02136 2439 PA5-28262 Old JNK2 -0.052328
253
+ AGID00307 1757 ab10484 Set163 KAP1 -0.3393155
254
+ AGID00528 904 2180 Old KU80 0.140773
255
+ AGID00375 2237 HPA028732 Set163 LAD1 0.773165
256
+ AGID00290 1643 IHC-00439 Set163 Lasu1 0.355345
257
+ AGID00279 1618 4108 Set163 LC3A-B 0.2483848
258
+ AGID00042 397 2752 Old LCK -0.59091
259
+ AGID00119 976 3582 Old LDHA NA
260
+ AGID00533 977 ab85319 Old LDHB NA
261
+ AGID00529 1477 3050 Old LKB1 0.0177505
262
+ AGID00244 1367 2568 Set163 LRP6_pS1490 0.083105
263
+ AGID00439 2424 2796 Set163 Lyn -0.305495
264
+ AGID02154 2460 4370 Old MAPK_pT202Y204 1.02986
265
+ AGID00198 1222 5453 Set163 Mcl-1 -0.06935103
266
+ AGID00288 1633 AB3314P Set163 MCT4 0.6236499
267
+ AGID00175 1164 3521 Set163 MDM2_pS166 0.01148502
268
+ AGID00044 417 1235-1/ab32576 Old MEK1 -0.136234
269
+ AGID00143 1076 9154 Old MEK1_pS217S221 0.31395
270
+ AGID00201 1243 9125 Set163 MEK2 0.04603955
271
+ AGID00361 2118 ab51061 Set163 MelanA 0.028025
272
+ AGID00362 2119 ab137078 Set163 Melanoma-gp100 0.04328992
273
+ AGID00337 1951 12711 Set163 MERIT40 -0.4145556
274
+ AGID00338 1952 12110 Set163 MERIT40_pS29 -0.02946998
275
+ AGID02212 2574 ab195352 Set163 METTL3 0.08805002
276
+ AGID00225 1323 sc-20121 Set163 MIF 0.03579002
277
+ AGID00137 1062 WH0054206M1 Old MIG6 -0.0925845
278
+ AGID00403 2117 ab20663 Set163 MITF -0.1055654
279
+ AGID00503 1067 ab3298 Old MITOCHONDRIA NA
280
+ AGID00321 1809 14739 Set163 Mitofusin-1 0.1934312
281
+ AGID00322 1810 11925 Set163 Mitofusin-2 0.0149499
282
+ AGID00389 2324 3515 Set163 MLH1 0.1830899
283
+ AGID00312 1780 14993 Set163 MLKL -0.1716701
284
+ AGID00402 2359 MAB3328 Set163 MMP14 0.41293
285
+ AGID00045 435 4022 Set163 MMP2 -0.4259528
286
+ AGID00122 1005 2195 Set163 Mnk1 0.1760888
287
+ AGID00331 1899 sc-377312 Set163 MR1 -0.006305164
288
+ AGID00273 1589 ab103319 Set163 MRAP 0.08585003
289
+ AGID00530 440 4847 Old MRE11 0.142195
290
+ AGID00390 905 2850 Old MSH2 -0.537415
291
+ AGID00138 1063 22030002 Old MSH6 -0.7331
292
+ AGID00299 1675 ab76148 Set163 MSI2 -0.322175
293
+ AGID00232 1344 ab14705 Set163 MTCO1 1.211638
294
+ AGID00046 444 2983 Old MTOR -0.000834
295
+ AGID00047 446 2971 Old MTOR_pS2448 0.31728
296
+ AGID00204 1247 H00009788-M01A Set163 MTSS1 0.1151748
297
+ AGID00401 1139 21370002 Old MYH11 -0.3908195
298
+ AGID00291 1647 3403 Old MYOSINIIA 0.367615
299
+ AGID00173 1160 5026 Old MYOSINIIA_pS1943 0.51758
300
+ AGID00318 1803 4282 Set163 Myt1 -0.06380023
301
+ AGID00216 1274 5795-1/ab129189 Old NAPSINA NA
302
+ AGID00418 452 4061 Old NCADHERIN -0.297175
303
+ AGID00156 1126 3217 Old NDRG1_pT346 0.1359885
304
+ AGID02133 2436 PA5-45913 Set163 NDUFB4 0.11596
305
+ AGID00134 1046 22710002 Old NF2 -0.50705
306
+ AGID00048 457 3033 Old NFKBP65_pS536 0.599765
307
+ AGID02155 2461 3608 Old NOTCH1 -0.13542
308
+ AGID00340 1969 4147 Set163 Notch1-cleaved -0.04234522
309
+ AGID00087 767 sc-5593 Set163 Notch3 0.007449998
310
+ AGID00258 1420 3187 Set163 NQO1 1.159115
311
+ AGID00162 1136 sc-31 Old NRAS 0.1471265
312
+ AGID00257 1419 12721 Old NRF2 NA
313
+ AGID00297 1669 2750 Set163 Oct-4 -0.03444499
314
+ AGID00420 466 1712-1/ab40803 Old P16INK4A 0.100935
315
+ AGID00384 470 sc-6246 Old P21 0.14176
316
+ AGID00105 897 1591-1/ab32034 Old P27 -0.41741
317
+ AGID00096 842 AF1555 Old P27_pT157 0.1270595
318
+ AGID00099 878 ab64949 Old P27_pT198 0.073734
319
+ AGID00181 1175 9228 Set163 p38-a -0.1382211
320
+ AGID00098 479 9211 Old P38_pT180Y182 0.34507
321
+ AGID00049 478 9212 Old P38MAPK -0.0399953
322
+ AGID00151 1119 4695 Set163 p44-42-MAPK 0.181935
323
+ AGID00050 481 9282 Old P53 0.42837
324
+ AGID00490 1187 610833 Old P62LCKLIGAND 1.0894
325
+ AGID00545 1415 ab53039 Old P63 NA
326
+ AGID00052 494 9205 Old P70S6K_pT389 0.106923
327
+ AGID00051 493 1494-1/ab32529 Old P70S6K1 -0.0005885
328
+ AGID00085 759 9347 Old P90RSK 0.0610635
329
+ AGID00531 770 9344 Old P90RSK_pT359S363 0.1320985
330
+ AGID00182 1178 9346 Set163 p90RSK_pT573 0.1465699
331
+ AGID00053 499 612024 Old PAI1 0.49242
332
+ AGID00224 1322 HPA035895 Set163 PAICS 0.008970024
333
+ AGID00323 1811 2602 Set163 PAK1 1.07237
334
+ AGID02199 2517 PA5-69540 Set163 PAK4 -0.03884509
335
+ AGID00245 1370 4336-BPC-100 Set163 PAR 0.8202196
336
+ AGID00374 2209 66564 Set163 PARG 0.005819749
337
+ AGID00370 1372 sc-7150 Old PARP1 0.24628
338
+ AGID00468 501 9546 Old PARPCLEAVED 0.0190645
339
+ AGID00274 1591 ab53715 Set163 Patched 0.07076999
340
+ AGID00513 2486 60433 Set163 PAX6 0.1174299
341
+ AGID00441 1621 9857 Set163 PAX8 0.06176364
342
+ AGID00054 504 2542 Old PAXILLIN -0.254095
343
+ AGID00055 509 2130 Old PCADHERIN -0.0879685
344
+ AGID00248 511 ab29 Old PCNA -0.19487
345
+ AGID00413 2095 43248 Old PDCD1 NA
346
+ AGID00094 816 600-401-965 Old PDCD4 -0.70086
347
+ AGID00385 1225 3169 Set163 PDGFRB 0.02336501
348
+ AGID00210 1258 ab110332 Set163 PDH -0.02829613
349
+ AGID00324 1817 3205 Set163 PDHA1 0.1972543
350
+ AGID00280 1622 3820 Set163 PDHK1 0.1169
351
+ AGID00056 515 3062 Old PDK1 0.1281235
352
+ AGID00057 516 3061 Old PDK1_pS241 0.24778
353
+ AGID00300 1234 sc-19090 Old PDL1 0.129048
354
+ AGID00124 1017 2780 Old PEA15 0.144069
355
+ AGID00125 1018 44-836G Old PEA15_pS116 -0.110995
356
+ AGID00440 2429 3192 Set163 PERK -0.02051059
357
+ AGID02207 2569 ab192876 Set163 PGM1 0.04854937
358
+ AGID00281 1623 13428 Set163 PHGDH 0.3900694
359
+ AGID00425 2399 22789-1-AP Set163 PHLPP -0.29293
360
+ AGID00226 1330 sc-376412 Set163 PI3K-p110-b 0.03990001
361
+ AGID00093 808 4255 Old PI3KP110ALPHA -0.032057
362
+ AGID00058 523 06-195 Old PI3KP85 -0.64753
363
+ AGID00296 1667 5675 Set163 PKA-a -0.4292851
364
+ AGID00259 1426 9375 Set163 PKC-a-b-II_pT638_T641 -0.07228998
365
+ AGID00172 529 05-154 Old PKCALPHA -0.857775
366
+ AGID00460 530 06-822 Old PKCALPHA_pS657 -0.568895
367
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