Auto-upload batch data to clear storage

.gitattributes

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data/__notebook__.ipynb

@@ -66472,6 +66472,1400 @@
      },
      "metadata": {},
      "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Upload thành công!\n",
+      "-> Đang xóa dữ liệu local để giải phóng bộ nhớ...\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "-> Đã làm trống thư mục. Dung lượng hiện tại: 0.00 GB\n",
+      "--------------------------------------------------\n",
+      "[8079/10000] (15.49GB) Downloading: BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8080/10000] (0.00GB) Downloading: TCGA-BRCA.90a0edb3-d939-4c43-bbc5-0ed30023e35b.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8081/10000] (0.01GB) Downloading: TCGA-BRCA.3b12a9e9-a268-4469-b63e-2a735e164803.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8082/10000] (0.01GB) Downloading: TCGA-AC-A3W6-01Z-00-DX1.88CC534C-F032-4E5D-9CC4-4BB50AA46880.svs (155.53 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8083/10000] (0.16GB) Downloading: TCGA-A2-A0EM-01A-01-BSA.aef9970e-ae41-478b-bdd1-510eec165c06.svs (193.97 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8084/10000] (0.35GB) Downloading: KEBAB_p_TCGASNP_226_227_N_GenomeWideSNP_6_B02_1151576.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8085/10000] (0.35GB) Downloading: TCGA-B6-A0X4-01A-01-TS1.5a7fe82b-410b-42da-b90c-a63bc1cb2a38.svs (269.75 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8086/10000] (0.61GB) Downloading: c8ed13a0-2630-4773-9716-c81cbcafd34f.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8087/10000] (0.61GB) Downloading: d14286db-87da-464b-9e76-a3a1e28d121f.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8088/10000] (0.61GB) Downloading: TCGA-BRCA.3b12a9e9-a268-4469-b63e-2a735e164803.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8089/10000] (0.61GB) Downloading: TCGA-A2-A0EM.454CB5E9-3778-4666-9CED-913E08CB3615.PDF (0.12 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8090/10000] (0.61GB) Downloading: 7b0b60c7-5fa0-440e-937f-8d82119330d6_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.19 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8091/10000] (0.61GB) Downloading: TCGA-BRCA.90a0edb3-d939-4c43-bbc5-0ed30023e35b.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8092/10000] (0.62GB) Downloading: TCGA-BRCA.263be494-445c-469b-8b53-d27860d73f8d.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8093/10000] (0.62GB) Downloading: 1467bc96-cad8-4011-962e-d43e6c725f63.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8094/10000] (0.62GB) Downloading: d14286db-87da-464b-9e76-a3a1e28d121f_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8095/10000] (0.63GB) Downloading: e3360c02-09b9-45c5-ac58-894d045023e6.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8096/10000] (0.63GB) Downloading: e49b3fc7-3a27-452f-9151-cb822ae121f5_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8097/10000] (0.63GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8098/10000] (0.63GB) Downloading: e49b3fc7-3a27-452f-9151-cb822ae121f5.methylation_array.sesame.level3betas.txt (12.38 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8099/10000] (0.65GB) Downloading: e13d83d7-5eb9-4f01-b554-072c580cd183.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8100/10000] (0.65GB) Downloading: TCGA-BRCA.90a0edb3-d939-4c43-bbc5-0ed30023e35b.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8101/10000] (0.65GB) Downloading: e49b3fc7-3a27-452f-9151-cb822ae121f5_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8102/10000] (0.66GB) Downloading: TCGA-BRCA.90a0edb3-d939-4c43-bbc5-0ed30023e35b.ascat2.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8103/10000] (0.66GB) Downloading: nationwidechildrens.org_ssf.TCGA-OL-A5DA.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8104/10000] (0.66GB) Downloading: nationwidechildrens.org_ssf.TCGA-AR-A2LK.xml (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8105/10000] (0.66GB) Downloading: 89ece83e-318b-4b9d-9315-0a6355fe911f.methylation_array.sesame.level3betas.txt (12.57 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8106/10000] (0.67GB) Downloading: TCGA-AR-A2LK.73FFBADB-37C0-4F17-8C95-F8DC94EF1AD3.PDF (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8107/10000] (0.67GB) Downloading: e7a00fda-0d05-468f-b6a0-18653e961da7.mirbase21.isoforms.quantification.txt (0.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8108/10000] (0.67GB) Downloading: b182ddfc-49a5-407e-9b46-157ecfa410b4_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8109/10000] (0.68GB) Downloading: TCGA-OL-A5DA.5049C91E-F4BB-4AA7-BE64-837168189379.PDF (0.22 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8110/10000] (0.68GB) Downloading: TCGA-OL-A5DA-01Z-00-DX1.1B1E9CC4-7B42-43BB-A1D7-A26F1D1F8557.svs (1294.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8111/10000] (1.94GB) Downloading: TCGA-OL-A5DA-01A-21-A321-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8112/10000] (1.94GB) Downloading: b182ddfc-49a5-407e-9b46-157ecfa410b4.methylation_array.sesame.level3betas.txt (12.58 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8113/10000] (1.95GB) Downloading: 89ece83e-318b-4b9d-9315-0a6355fe911f_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8114/10000] (1.96GB) Downloading: 11d450a3-4578-4444-8ddf-613b5868b683.rna_seq.augmented_star_gene_counts.tsv (4.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8115/10000] (1.96GB) Downloading: DOUSE_p_TCGA_287_288_289_N_GenomeWideSNP_6_E05_1361158.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8116/10000] (1.96GB) Downloading: nationwidechildrens.org_clinical.TCGA-AR-A2LK.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8117/10000] (1.96GB) Downloading: TCGA-BRCA.f1dacc81-2040-4772-94d3-0bc349ab567c.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8118/10000] (1.96GB) Downloading: TCGA-D8-A73X-01A-21-A43F-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8119/10000] (1.96GB) Downloading: TCGA-BRCA.f1dacc81-2040-4772-94d3-0bc349ab567c.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8120/10000] (1.96GB) Downloading: TCGA-BRCA.e831ad69-0f96-4d82-a435-6b754e44122f.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8121/10000] (1.97GB) Downloading: TCGA-BRCA.e831ad69-0f96-4d82-a435-6b754e44122f.ascat2.allelic_specific.seg.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8122/10000] (1.97GB) Downloading: bce8e1de-d465-448e-b7ad-88f3c383d94f.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8123/10000] (1.97GB) Downloading: TCGA-BRCA.77cf9295-680b-433c-98b6-022747c28474.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8124/10000] (1.97GB) Downloading: TCGA-D8-A73X-01Z-00-DX1.5F0DF75C-594C-42DF-BE3F-E00E5E01DCD6.svs (582.43 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8125/10000] (2.54GB) Downloading: 6b81cbbd-6e91-4844-9123-5d3450387632.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8126/10000] (2.54GB) Downloading: a1ff9e4d-d17c-42bb-be4d-a4741e7c2e67.methylation_array.sesame.level3betas.txt (0.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8127/10000] (2.54GB) Downloading: MOHEL_p_TCGA_271_274_275_N_GenomeWideSNP_6_D02_1320318.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8128/10000] (2.54GB) Downloading: 6e9399f2-3caf-4ad4-8c67-794ad8e3d335_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8129/10000] (2.55GB) Downloading: TCGA-BRCA.faaa02ff-b4f1-4f4d-be66-1254bd2c7403.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8130/10000] (2.55GB) Downloading: MOHEL_p_TCGA_271_274_275_N_GenomeWideSNP_6_D02_1320318.nocnv_grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8131/10000] (2.55GB) Downloading: 05442037-337a-4cb4-89b1-a6d66cef594f.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8132/10000] (2.55GB) Downloading: TCGA-D8-A73X-01Z-00-DX2.1ABCCE71-A70C-48C3-924E-2C8F5F71E269.svs (1551.25 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8133/10000] (4.07GB) Downloading: a766a74e-b48b-4569-a925-8d16794ff19a.mirbase21.isoforms.quantification.txt (0.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8134/10000] (4.07GB) Downloading: TCGA-LQ-A4E4.C13D16C9-BAC7-4CA4-B062-D925466F9E2B.PDF (0.25 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8135/10000] (4.07GB) Downloading: TCGA-A2-A04U-01A-21-A13A-20_RPPA_data.tsv (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8136/10000] (4.07GB) Downloading: TCGA-BRCA.77cf9295-680b-433c-98b6-022747c28474.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8137/10000] (4.07GB) Downloading: TCGA-A2-A04U-01Z-00-DX1.06D17357-46A8-4DC3-A22B-2F4EB6EE3F79.svs (1106.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8138/10000] (5.15GB) Downloading: a5718c8b-0774-48c9-bec2-433de71bd7da.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8139/10000] (5.15GB) Downloading: TCGA-BRCA.544dd94e-abd8-4cca-98cf-d1c2c646f23a.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8140/10000] (5.15GB) Downloading: TCGA-BRCA.544dd94e-abd8-4cca-98cf-d1c2c646f23a.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8141/10000] (5.16GB) Downloading: 6e9399f2-3caf-4ad4-8c67-794ad8e3d335.methylation_array.sesame.level3betas.txt (12.46 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8142/10000] (5.17GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8143/10000] (5.17GB) Downloading: TCGA-BRCA.d0a1e510-1f13-4153-ab54-e813217d5704.ascat3.allelic_specific.seg.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8144/10000] (5.17GB) Downloading: 8e317da5-4672-4ce6-9890-8f74e85f0d24.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8145/10000] (5.17GB) Downloading: 6b81cbbd-6e91-4844-9123-5d3450387632_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8146/10000] (5.17GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A0H5.xml (0.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8147/10000] (5.17GB) Downloading: TCGA-BRCA.d0a1e510-1f13-4153-ab54-e813217d5704.gene_level_copy_number.v36.tsv (3.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8148/10000] (5.17GB) Downloading: TCGA-BH-A0H5-11A-06-TSF.a6f95f34-4095-49ae-8105-0d7310aa856c.svs (62.65 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8149/10000] (5.23GB) Downloading: TCGA-BRCA.d0a1e510-1f13-4153-ab54-e813217d5704.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8150/10000] (5.24GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8151/10000] (5.24GB) Downloading: a8c7bebe-a450-4a3e-b891-e2d4ac578b04.mirbase21.isoforms.quantification.txt (0.42 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8152/10000] (5.24GB) Downloading: c5316aec-13f5-4299-8cd9-783f777f29bb.methylation_array.sesame.level3betas.txt (0.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8153/10000] (5.24GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8154/10000] (5.24GB) Downloading: TCGA-BRCA.544dd94e-abd8-4cca-98cf-d1c2c646f23a.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8155/10000] (5.24GB) Downloading: HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8156/10000] (5.24GB) Downloading: TCGA-A7-A425.F969E3E4-0053-44E9-85BC-BEFDBD62C512.PDF (0.16 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8157/10000] (5.24GB) Downloading: TCGA-BH-A0WA-01A-01-TS1.432bea0e-7c43-4b34-bee7-3ee094e87c40.svs (325.64 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8158/10000] (5.56GB) Downloading: RAMIE_p_6TCGA_250_232_4_236_N_GenomeWideSNP_6_G05_1245178.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8159/10000] (5.56GB) Downloading: f01a74fd-18c3-4bec-af77-6c7975544d7f_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8160/10000] (5.57GB) Downloading: 0cf6e812-a0dc-411b-96b2-92ad36bb00d9.mirbase21.isoforms.quantification.txt (0.36 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8161/10000] (5.57GB) Downloading: 7132cfb8-66e0-4fa1-b80c-7c0aa79b89c1_wgs_gdc_realn.cr.igv.reheader.seg.txt (0.08 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8162/10000] (5.57GB) Downloading: f01a74fd-18c3-4bec-af77-6c7975544d7f.methylation_array.sesame.level3betas.txt (12.53 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8163/10000] (5.58GB) Downloading: TCGA-JL-A3YX-01Z-00-DX1.0FE8F389-F79A-4CF8-A83C-420380A02552.svs (974.94 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8164/10000] (6.53GB) Downloading: d250ca1d-c933-4724-92f1-88ed7e926b95.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8165/10000] (6.53GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A0E9.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8166/10000] (6.53GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8167/10000] (6.53GB) Downloading: COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8168/10000] (6.53GB) Downloading: TCGA-BRCA.dc318c7f-d583-49ae-978d-f298cef23098.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8169/10000] (6.54GB) Downloading: 865207f2-81a5-4213-b165-fe1e27bf7f93.mirbase21.isoforms.quantification.txt (0.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8170/10000] (6.54GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8171/10000] (6.54GB) Downloading: nationwidechildrens.org_clinical.TCGA-BH-A0WA.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8172/10000] (6.54GB) Downloading: TCGA-BH-A0WA-01Z-00-DX1.C0EB7B73-5529-49EC-B660-3F849B041963.svs (819.85 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8173/10000] (7.34GB) Downloading: TCGA-BRCA.35001085-6428-46a2-a1c7-a45970cac84f.ascat3.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8174/10000] (7.34GB) Downloading: e7dc66b1-6a54-46ec-8da1-ec42a60175ed_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8175/10000] (7.34GB) Downloading: b5800e72-e622-436c-9d60-85fd360877be.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8176/10000] (7.34GB) Downloading: TCGA-BRCA.6fa29a88-190a-4394-b84b-8eb6d12f5339.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8177/10000] (7.34GB) Downloading: TCGA-BH-A0HW-01A-01-BSA.ce352376-0dc4-4470-85b2-3cfb122531e8.svs (690.10 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8178/10000] (8.02GB) Downloading: TCGA-BH-A0HW-01Z-00-DX1.44DCCE00-133F-4469-A4DA-5057C011B4AC.svs (1566.48 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8179/10000] (9.54GB) Downloading: e029a1c1-a71c-4457-b933-89754b7f29ab_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8180/10000] (9.55GB) Downloading: a9384fa7-6829-4f19-a485-54238938523e_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8181/10000] (9.55GB) Downloading: TCGA-BRCA.35001085-6428-46a2-a1c7-a45970cac84f.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8182/10000] (9.56GB) Downloading: 88f58847-c85a-432d-b499-2d341e88082b.mirbase21.isoforms.quantification.txt (0.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8183/10000] (9.56GB) Downloading: a9384fa7-6829-4f19-a485-54238938523e_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8184/10000] (9.56GB) Downloading: b87d5d4b-8260-4271-8617-5799278d466f.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8185/10000] (9.56GB) Downloading: TCGA-OL-A66H-01Z-00-DX1.E54AF3FA-E59E-404C-BB83-A6FC6FC9B312.svs (2913.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8186/10000] (12.41GB) Downloading: TCGA-BRCA.ce6abca6-47d8-4404-82d3-2209e450c709.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8187/10000] (12.41GB) Downloading: TCGA-BRCA.ce6abca6-47d8-4404-82d3-2209e450c709.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8188/10000] (12.41GB) Downloading: TCGA-BRCA.ce6abca6-47d8-4404-82d3-2209e450c709.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8189/10000] (12.42GB) Downloading: 88e23be2-8704-4eac-9317-2d7350fbf28e_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8190/10000] (12.42GB) Downloading: TCGA-A8-A08C.6E136F3D-A6E1-4541-AA4B-65BC5872DE06.PDF (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8191/10000] (12.42GB) Downloading: fb5f0118-87fb-409f-89d8-9bd9f06867b9.rna_seq.augmented_star_gene_counts.tsv (4.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8192/10000] (12.42GB) Downloading: 88e23be2-8704-4eac-9317-2d7350fbf28e_noid_Grn.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8193/10000] (12.42GB) Downloading: 19f69b7d-1548-428d-9486-787886d2f2b0.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8194/10000] (12.42GB) Downloading: TCGA-D8-A1JB-01A-01-TS1.dbe1aadb-8200-4711-9e1b-bb73187c807e.svs (189.34 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8195/10000] (12.61GB) Downloading: 88e23be2-8704-4eac-9317-2d7350fbf28e.methylation_array.sesame.level3betas.txt (0.74 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8196/10000] (12.61GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-OL-A66H.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8197/10000] (12.61GB) Downloading: TCGA-BRCA.22c2050e-587d-4dc3-8955-9578bdd050d9.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8198/10000] (12.61GB) Downloading: BURSA_p_TCGA_303_304_305_N_GenomeWideSNP_6_E04_1344852.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8199/10000] (12.61GB) Downloading: nationwidechildrens.org_ssf.TCGA-OL-A66H.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8200/10000] (12.61GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8201/10000] (12.61GB) Downloading: BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.grch38.seg.v2.txt (0.04 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8202/10000] (12.61GB) Downloading: BURSA_p_TCGA_303_304_305_N_GenomeWideSNP_6_C08_1344848.grch38.seg.v2.txt (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8203/10000] (12.61GB) Downloading: CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8204/10000] (12.61GB) Downloading: TCGA-BRCA.ba751e6e-5336-423f-81a4-5ec3109ae4e7.absolute_liftover.gene_level_copy_number.v36.tsv (3.27 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8205/10000] (12.61GB) Downloading: TCGA-BRCA.fe110a00-ddf8-468a-966e-4823df9cbe40.ascat2.allelic_specific.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8206/10000] (12.61GB) Downloading: nationwidechildrens.org_ssf.TCGA-BH-A0AV.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8207/10000] (12.61GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8208/10000] (12.61GB) Downloading: TCGA-D8-A3Z5-01A-42D-A89C-36.WholeGenome.RP-1657.cr.igv.reheader.seg.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8209/10000] (12.61GB) Downloading: 689d0e18-b8bc-4e7f-90b6-6f05208ed3a8.mirbase21.isoforms.quantification.txt (0.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8210/10000] (12.61GB) Downloading: TCGA-BRCA.b43507b1-4ade-4f26-abee-1391e9433a57.absolute_liftover.gene_level_copy_number.v36.tsv (3.28 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8211/10000] (12.62GB) Downloading: TCGA-D8-A3Z5-01A-04-TS4.DC4D412A-3D6F-485F-A0CC-D01C8F8C1387.svs (206.85 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8212/10000] (12.82GB) Downloading: 5083040b-5e12-4157-974e-b8841b26492c.wxs.aliquot_ensemble_masked.maf.gz (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8213/10000] (12.82GB) Downloading: nationwidechildrens.org_clinical.TCGA-D8-A1JB.xml (0.09 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8214/10000] (12.82GB) Downloading: TCGA-BH-A0AV-01A-03-BSC.7a107632-b8d8-4b82-ab74-628fff0f10de.svs (321.73 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8215/10000] (13.13GB) Downloading: TCGA-BRCA.ba751e6e-5336-423f-81a4-5ec3109ae4e7.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8216/10000] (13.13GB) Downloading: TCGA-BRCA.b43507b1-4ade-4f26-abee-1391e9433a57.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8217/10000] (13.14GB) Downloading: CROZE_p_TCGA_254_256_255_N_GenomeWideSNP_6_B12_1301480.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8218/10000] (13.14GB) Downloading: 1265ff18-16b0-4be2-ba13-38a0068e7577_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8219/10000] (13.14GB) Downloading: URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8220/10000] (13.14GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-D8-A3Z5.xml (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8221/10000] (13.14GB) Downloading: 901ff87b-1380-4869-9ac6-511a2cb1353a_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8222/10000] (13.15GB) Downloading: fe55c8bd-c1c2-48ba-a34a-eaf7033a7552_noid_Red.idat (0.69 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8223/10000] (13.15GB) Downloading: BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C05_772090.nocnv_grch38.seg.v2.txt (0.00 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8224/10000] (13.15GB) Downloading: 9d1dafb6-f0bd-46ce-973f-00e292b43cae.wxs.aliquot_ensemble_masked.maf.gz (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8225/10000] (13.15GB) Downloading: nationwidechildrens.org_clinical.TCGA-A2-A0YJ.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8226/10000] (13.15GB) Downloading: ede34eaa-699a-496a-a3d3-8ef57ddbdb43.rna_seq.augmented_star_gene_counts.tsv (4.06 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8227/10000] (13.16GB) Downloading: ab4f9b48-641c-4ba9-a7b2-06e8279d30ee.wxs.aliquot_ensemble_masked.maf.gz (0.03 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8228/10000] (13.16GB) Downloading: 689d0e18-b8bc-4e7f-90b6-6f05208ed3a8.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8229/10000] (13.16GB) Downloading: CROZE_p_TCGA_254_256_255_N_GenomeWideSNP_6_B11_1301482.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8230/10000] (13.16GB) Downloading: 0a11e857-44e4-4cfd-a29b-11e5924a2a50.methylation_array.sesame.level3betas.txt (12.25 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8231/10000] (13.17GB) Downloading: SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.nocnv_grch38.seg.v2.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8232/10000] (13.17GB) Downloading: f968c18d-ab99-460f-93b9-43f62b48b9ab_noid_Red.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8233/10000] (13.18GB) Downloading: TCGA-A1-A0SM-01A-01-TS1.cd7bf3d5-af28-4149-9aae-3bb69301bfb0.svs (268.17 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8234/10000] (13.44GB) Downloading: nationwidechildrens.org_ssf.TCGA-A1-A0SM.xml (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8235/10000] (13.44GB) Downloading: TCGA-D8-A1JB-01Z-00-DX1.6CF48257-066C-4B8C-91AA-30A6B4AD4307.svs (1418.65 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8236/10000] (14.82GB) Downloading: TCGA-BRCA.98c00874-2525-47b6-b555-ebd259cbbcd1.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8237/10000] (14.83GB) Downloading: TCGA-BRCA.c2ab364e-16f8-47de-a506-35ec95fcd29d.ascat2.allelic_specific.seg.txt (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8238/10000] (14.83GB) Downloading: f1861e6c-c8d5-4450-99f3-f8523aea1a8f.mirbase21.mirnas.quantification.txt (0.05 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8239/10000] (14.83GB) Downloading: TCGA-BRCA.98c00874-2525-47b6-b555-ebd259cbbcd1.gene_level_copy_number.v36.tsv (3.30 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8240/10000] (14.83GB) Downloading: fbb5224b-769d-4b3f-a2fd-f7d58572374f.wxs.aliquot_ensemble_masked.maf.gz (0.01 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8241/10000] (14.83GB) Downloading: f968c18d-ab99-460f-93b9-43f62b48b9ab_noid_Grn.idat (7.72 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8242/10000] (14.84GB) Downloading: f1861e6c-c8d5-4450-99f3-f8523aea1a8f.mirbase21.isoforms.quantification.txt (0.60 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8243/10000] (14.84GB) Downloading: TCGA-BRCA.17bd1937-b31e-46af-8334-49b86f7a1922.ascat3.gene_level_copy_number.v36.tsv (3.29 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8244/10000] (14.84GB) Downloading: SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.grch38.seg.v2.txt (0.02 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8245/10000] (14.84GB) Downloading: nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml (0.07 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "[8246/10000] (14.84GB) Downloading: TCGA-A2-A0YJ-01Z-00-DX1.8135C74E-DAA8-4C8E-AF14-A4B5B57695BE.svs (884.13 MB)... "
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OK\n",
+      "\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "CẢNH BÁO: Dung lượng đã đạt giới hạn (15.70 GB).\n",
+      "Đang tiến hành upload lên Hugging Face và giải phóng bộ nhớ...\n",
+      "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n",
+      "\n"
+     ]
+    },
+    {
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+      },
+      "text/plain": [
+       "Processing Files (0 / 0): |          |  0.00B /  0.00B            "
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
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+      "text/plain": [
+       "New Data Upload: |          |  0.00B /  0.00B            "
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+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
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+        <clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">62</clin_shared:age_at_initial_pathologic_diagnosis>
+        <clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="34" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500564">2007</clin_shared:year_of_initial_pathologic_diagnosis>
+        <clin_shared:ethnicity preferred_name="ethnicity" display_order="13" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478603">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
+        <clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="16" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1478613"/>
+        <clin_shared:primary_lymph_node_presentation_assessment preferred_name="lymph_nodes_examined" display_order="47" cde="2200396" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500576">YES</clin_shared:primary_lymph_node_presentation_assessment>
+        <clin_shared:lymph_node_examined_count preferred_name="lymph_nodes_examined_count" display_order="48" cde="3" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500577">18</clin_shared:lymph_node_examined_count>
+        <brca_shared:er_detection_method_text preferred_name="er_positivity_method" display_order="63" cde="69" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500592"/>
+        <brca_shared:pgr_detection_method_text preferred_name="pr_positivity_define_method" display_order="69" cde="785" cde_ver="2.310" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500598"/>
+        <brca:anatomic_neoplasm_subdivisions>
+            <clin_shared:anatomic_neoplasm_subdivision preferred_name="anatomic_organ_subdivision" display_order="9999" cde="3108203" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500559">Right Upper Outer Quadrant</clin_shared:anatomic_neoplasm_subdivision>
+            <clin_shared:anatomic_neoplasm_subdivision preferred_name="anatomic_organ_subdivision" display_order="9999" cde="3108203" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500559">Right Lower Outer Quadrant</clin_shared:anatomic_neoplasm_subdivision>
+        </brca:anatomic_neoplasm_subdivisions>
+        <brca_shared:her2_neu_chromosone_17_signal_ratio_value preferred_name="her2_cent17_ratio" display_order="79" cde="2497552" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500608"/>
+        <brca:axillary_lymph_node_stage_method_type preferred_name="axillary_staging_method" display_order="44" cde="2516112" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500573">Sentinel lymph node biopsy plus axillary dissection</brca:axillary_lymph_node_stage_method_type>
+        <brca:axillary_lymph_node_stage_other_method_descriptive_text preferred_name="axillary_staging_method_other" display_order="45" cde="3124496" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500574"/>
+        <brca:breast_carcinoma_surgical_procedure_name preferred_name="surgical_procedure_first" display_order="38" cde="2739580" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500567">Other</brca:breast_carcinoma_surgical_procedure_name>
+        <brca:breast_neoplasm_other_surgical_procedure_descriptive_text preferred_name="surgery_for_positive_margins_other" display_order="42" cde="3124493" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="1500571" xsi:nil="true"/>
+        <brca:breast_carcinoma_primary_surgical_procedure_name preferred_name="surgery_for_positive_margins" display_order="41" cde="1218" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500570">Mastectomy NOS</brca:breast_carcinoma_primary_surgical_procedure_name>
+        <brca:surgical_procedure_purpose_other_text preferred_name="first_surgical_procedure_other" display_order="39" cde="3020338" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500568">Wide local excision</brca:surgical_procedure_purpose_other_text>
+        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500560">Infiltrating Lobular Carcinoma</shared:histological_type>
+        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="1500561" xsi:nil="true"/>
+        <clin_shared:menopause_status preferred_name="menopause_status" display_order="11" cde="2957270" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478601">Post (prior bilateral ovariectomy OR >12 mo since LMP with no prior hysterectomy)</clin_shared:menopause_status>
+        <brca_shared:breast_carcinoma_progesterone_receptor_status preferred_name="pr_status_by_ihc" display_order="64" cde="2957357" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500593">Positive</brca_shared:breast_carcinoma_progesterone_receptor_status>
+        <brca:cytokeratin_immunohistochemistry_staining_method_micrometastasis_indicator preferred_name="micromet_detection_by_ihc" display_order="46" cde="3086152" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500575"/>
+        <brca:breast_carcinoma_immunohistochemistry_er_pos_finding_scale preferred_name="er_positivity_scale_used" display_order="60" cde="3203081" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500589"/>
+        <brca_shared:immunohistochemistry_positive_cell_score preferred_name="er_ihc_score" display_order="61" cde="2230166" cde_ver="3.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500590"/>
+        <brca_shared:her2_immunohistochemistry_level_result preferred_name="her2_ihc_score" display_order="72" cde="2178402" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500601">1+</brca_shared:her2_immunohistochemistry_level_result>
+        <brca:breast_cancer_surgery_margin_status preferred_name="margin_status_reexcision" display_order="43" cde="2241252" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500572">Negative</brca:breast_cancer_surgery_margin_status>
+        <clin_shared:margin_status preferred_name="margin_status" display_order="40" cde="3114007" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500569">Positive</clin_shared:margin_status>
+        <clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="36" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500565">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
+        <clin_shared:init_pathology_dx_method_other preferred_name="method_initial_path_dx_other" display_order="37" cde="2757948" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="1500566" xsi:nil="true"/>
+        <brca_shared:lab_procedure_her2_neu_in_situ_hybrid_outcome_type preferred_name="her2_fish_status" display_order="75" cde="2854089" cde_ver="1.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500604">Negative</brca_shared:lab_procedure_her2_neu_in_situ_hybrid_outcome_type>
+        <brca_shared:breast_carcinoma_estrogen_receptor_status preferred_name="er_status_by_ihc" display_order="58" cde="2957359" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500587">Positive</brca_shared:breast_carcinoma_estrogen_receptor_status>
+        <brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="her2_status_by_ihc" display_order="70" cde="2957563" cde_ver="2.000" xsd_ver="2.2" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500599">Equivocal</brca_shared:lab_proc_her2_neu_immunohistochemistry_receptor_status>
+        <clin_shared:number_of_lymphnodes_positive_by_ihc preferred_name="lymph_nodes_examined_ihc_count" display_order="50" cde="3086383" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500579"/>
+        <clin_shared:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="49" cde="3086388" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500578">5</clin_shared:number_of_lymphnodes_positive_by_he>
+        <brca_shared:pos_finding_progesterone_receptor_other_measurement_scale_text preferred_name="pr_positivity_scale_other" display_order="68" cde="3086857" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500597"/>
+        <brca_shared:positive_finding_estrogen_receptor_other_measurement_scale_text preferred_name="er_positivity_scale_other" display_order="62" cde="3086851" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500591"/>
+        <brca_shared:her2_erbb_pos_finding_cell_percent_category preferred_name="her2_ihc_percent_positive" display_order="71" cde="3086980" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500600"/>
+        <brca_shared:pos_finding_her2_erbb2_other_measurement_scale_text preferred_name="her2_positivity_scale_other" display_order="73" cde="3087479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500602"/>
+        <brca_shared:her2_erbb_method_calculation_method_text preferred_name="her2_positivity_method_text" display_order="74" cde="3087487" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500603"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_analysis_input_total_number_count preferred_name="her2_and_cent17_cells_count" display_order="78" cde="3087902" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500607"/>
+        <brca_shared:her2_and_centromere_17_positive_finding_other_measurement_scale_text preferred_name="her2_and_cent17_scale_other" display_order="80" cde="3087923" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500609"/>
+        <brca_shared:her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="her2_fish_method" display_order="81" cde="3087929" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500610"/>
+        <clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="4" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478557">NO</clin_shared:tissue_prospective_collection_indicator>
+        <clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="5" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478558">YES</clin_shared:tissue_retrospective_collection_indicator>
+        <brca_shared:fluorescence_in_situ_hybridization_diagnostic_procedure_chromosome_17_signal_result_range preferred_name="cent17_copy_number" display_order="77" cde="3104295" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500606"/>
+        <brca:first_nonlymph_node_metastasis_anatomic_sites>
+            <clin_shared:metastatic_site_at_diagnosis preferred_name="metastasis_site" display_order="56" cde="3124499" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500585"/>
+            <clin_shared:metastatic_site_at_diagnosis_other preferred_name="metastasis_site_other" display_order="57" cde="3124503" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500586"/>
+        </brca:first_nonlymph_node_metastasis_anatomic_sites>
+        <brca_shared:er_level_cell_percentage_category preferred_name="er_status_ihc_Percent_Positive" display_order="59" cde="3128341" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500588">70-79%</brca_shared:er_level_cell_percentage_category>
+        <brca_shared:progesterone_receptor_level_cell_percent_category preferred_name="pr_status_ihc_percent_positive" display_order="65" cde="3128342" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500594"/>
+        <brca:distant_metastasis_present_ind2 preferred_name="metastatic_tumor_indicator" display_order="999" cde="2194698" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500646">NO</brca:distant_metastasis_present_ind2>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500647">Positive</brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500648"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500650"/>
+        <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500651"/>
+        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500652"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500653">Positive</brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500659">Negative</brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500654"/>
+        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500656"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500657"/>
+        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500658"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500660"/>
+        <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500661"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500662"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500663"/>
+        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Evaluated" restricted="false" source_system_identifier="1500664"/>
+        <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500666"/>
+        <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500667"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500668"/>
+        <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500669"/>
+        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500670"/>
+        <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500665"/>
+        <brca_shared:her2_neu_breast_carcinoma_copy_analysis_input_total_number preferred_name="her2_copy_number" display_order="76" cde="3133738" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500605"/>
+        <brca:breast_carcinoma_immunohistochemistry_progesterone_receptor_pos_finding_scale preferred_name="pr_positivity_scale_used" display_order="66" cde="3203083" cde_ver="1.000" xsd_ver="2.4.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500595"/>
+        <brca_shared:breast_carcinoma_immunohistochemistry_pos_cell_score preferred_name="pr_positivity_ihc_intensity_score" display_order="67" cde="3133874" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500596"/>
+        <shared_stage:stage_event system="AJCC">
+            <shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="51" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500580">6th</shared_stage:system_version>
+            <shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="55" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500584">Stage III</shared_stage:pathologic_stage>
+            <shared_stage:tnm_categories>
+                <shared_stage:clinical_categories>
+                    <shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                    <shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                </shared_stage:clinical_categories>
+                <shared_stage:pathologic_categories>
+                    <shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="52" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500581">T3</shared_stage:pathologic_T>
+                    <shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="53" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500582">N2</shared_stage:pathologic_N>
+                    <shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="54" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500583">M0</shared_stage:pathologic_M>
+                </shared_stage:pathologic_categories>
+            </shared_stage:tnm_categories>
+            <shared_stage:psa>
+                <shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="9999" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Not Applicable" preferred_name="days_to_psa_most_recent" display_order="9999" cde_ver="1.000"/>
+            </shared_stage:psa>
+            <shared_stage:gleason_grading>
+                <shared_stage:gleason_score preferred_name="gleason_score" display_order="9999" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="9999" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9999" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="9999" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:gleason_grading>
+            <shared_stage:ann_arbor>
+                <shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            </shared_stage:ann_arbor>
+            <shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+            <shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+        </shared_stage:stage_event>
+        <clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="27" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="26" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+        <brca_nte:new_tumor_events>
+            <nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="82" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+            <brca_nte:new_tumor_event>
+                <nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Available" preferred_name="new_tumor_event_dx_days_to" display_order="89" cde_ver="1.000"/>
+                <nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="83" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="84" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="85" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <nte:new_tumor_event_additional_surgery_procedure preferred_name="new_tumor_event_surgery" display_order="90" cde="3427611" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <nte:days_to_new_tumor_event_additional_surgery_procedure precision="day" xsd_ver="2.5" tier="2" cde="3008335" owner="TSS" procurement_status="Not Available" preferred_name="new_tumor_event_surgery_days_to" display_order="94" cde_ver="1.000"/>
+                <nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="95" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="96" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500647">Positive</brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500648"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_positive_finding_scale_type preferred_name="nte_er_positivity_scale_used" display_order="99" cde="3203082" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500649"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500650"/>
+                <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500651"/>
+                <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500652"/>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500653">Positive</brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500654"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_progesterone_receptor_positive_finding_scale_type preferred_name="nte_pr_positivity_scale_used" display_order="105" cde="3203085" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500655"/>
+                <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500656"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500657"/>
+                <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500658"/>
+                <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1500659">Negative</brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500660"/>
+                <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500661"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500662"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500663"/>
+                <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Evaluated" restricted="false" source_system_identifier="1500664"/>
+                <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500665"/>
+                <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500666"/>
+                <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500667"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500668"/>
+                <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500669"/>
+                <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1500670"/>
+            </brca_nte:new_tumor_event>
+        </brca_nte:new_tumor_events>
+        <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478555">25</clin_shared:day_of_form_completion>
+        <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478554">1</clin_shared:month_of_form_completion>
+        <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1478556">2012</clin_shared:year_of_form_completion>
+        <brca:follow_ups>
+            <follow_up_v4.0:follow_up version="4.0" sequence="1">
+                <clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-F35203</clin_shared:bcr_followup_barcode>
+                <clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">01404DEF-ED7D-4186-9DC8-5FE8C812821B</clin_shared:bcr_followup_uuid>
+                <clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="4" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2118029">NO</clin_shared:lost_follow_up>
+                <clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="26" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2118030">YES</clin_shared:radiation_therapy>
+                <clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="27" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2118031">YES</clin_shared:postoperative_rx_tx>
+                <clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="16" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2118032"/>
+                <clin_shared:vital_status preferred_name="vital_status" display_order="17" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2118033">Dead</clin_shared:vital_status>
+                <clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Not Available" preferred_name="last_contact_days_to" display_order="21" cde_ver="1.000"/>
+                <clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Completed" preferred_name="death_days_to" display_order="25" cde_ver="1.000">1649</clin_shared:days_to_death>
+                <brca_nte:new_tumor_events>
+                    <nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="82" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240670">YES</nte:new_tumor_event_after_initial_treatment>
+                    <brca_nte:new_tumor_event>
+                        <nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Completed" preferred_name="new_tumor_event_dx_days_to" display_order="89" cde_ver="1.000">1304</nte:days_to_new_tumor_event_after_initial_treatment>
+                        <nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="83" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240671">Distant Metastasis</nte:new_neoplasm_event_type>
+                        <nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="84" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240672">Bone</nte:new_neoplasm_event_occurrence_anatomic_site>
+                        <nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="85" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240673"/>
+                        <nte:new_tumor_event_additional_surgery_procedure preferred_name="new_tumor_event_surgery" display_order="90" cde="3427611" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240678"/>
+                        <nte:days_to_new_tumor_event_additional_surgery_procedure precision="day" xsd_ver="2.5" tier="2" cde="3008335" owner="TSS" procurement_status="Not Available" preferred_name="new_tumor_event_surgery_days_to" display_order="94" cde_ver="1.000"/>
+                        <nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="95" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240683"/>
+                        <nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="96" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240684"/>
+                        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status preferred_name="nte_er_status" display_order="97" cde="3131865" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240685">Positive</brca_shared:metastatic_breast_carcinoma_estrogen_receptor_status>
+                        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_level_cell_percent_category preferred_name="nte_er_status_ihc__positive" display_order="98" cde="3131869" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240686"/>
+                        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_positive_finding_scale_type preferred_name="nte_er_positivity_scale_used" display_order="99" cde="3203082" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240687"/>
+                        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_er_pos_cell_score preferred_name="nte_er_ihc_intensity_score" display_order="100" cde="3131873" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240688"/>
+                        <brca_shared:pos_finding_metastatic_breast_carcinoma_estrogen_receptor_other_measuremenet_scale_text preferred_name="nte_er_positivity_other_scale" display_order="101" cde="3131877" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240689"/>
+                        <brca_shared:metastatic_breast_carcinoma_estrogen_receptor_detection_method_text preferred_name="nte_er_positivity_define_method" display_order="102" cde="3131881" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240690"/>
+                        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status preferred_name="nte_pr_status_by_ihc" display_order="103" cde="3131884" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240691">Positive</brca_shared:metastatic_breast_carcinoma_progesterone_receptor_status>
+                        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_level_cell_percent_category preferred_name="nte_pr_status_ihc__positive" display_order="104" cde="3131891" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240692"/>
+                        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_progesterone_receptor_positive_finding_scale_type preferred_name="nte_pr_positivity_scale_used" display_order="105" cde="3203085" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240693"/>
+                        <brca_shared:metastatic_breast_carcinoma_immunohistochemistry_pr_pos_cell_score preferred_name="nte_pr_ihc_intensity_score" display_order="106" cde="3131988" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240694"/>
+                        <brca_shared:metastatic_breast_carcinoma_pos_finding_progesterone_receptor_other_measure_scale_text preferred_name="nte_pr_positivity_other_scale" display_order="107" cde="3131992" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240695"/>
+                        <brca_shared:metastatic_breast_carcinoma_progesterone_receptor_detection_method_text preferred_name="nte_pr_positivity_define_method" display_order="108" cde="3131993" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240696"/>
+                        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status preferred_name="nte_her2_status" display_order="109" cde="3131997" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240697">Negative</brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_immunohistochemistry_receptor_status>
+                        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_cell_percent_category preferred_name="nte_her2_status_ihc__positive" display_order="110" cde="3132322" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240698"/>
+                        <brca_shared:metastatic_breast_carcinoma_erbb2_immunohistochemistry_level_result preferred_name="nte_her2_positivity_ihc_score" display_order="111" cde="3132444" cde_ver="2.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240699"/>
+                        <brca_shared:metastatic_breast_carcinoma_pos_finding_her2_erbb2_other_measure_scale_text preferred_name="nte_her2_positivity_other_scale" display_order="112" cde="3132448" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240700"/>
+                        <brca_shared:metastatic_breast_carcinoma_her2_erbb_method_calculation_method_text preferred_name="nte_her2_positivity_method" display_order="113" cde="3132452" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240701"/>
+                        <brca_shared:metastatic_breast_carcinoma_lab_proc_her2_neu_in_situ_hybridization_outcome_type preferred_name="nte_her2_fish_status" display_order="114" cde="3132455" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Evaluated" restricted="false" source_system_identifier="2240702"/>
+                        <brca_shared:her2_neu_metastatic_breast_carcinoma_copy_analysis_input_total_number preferred_name="nte_her2_signal_number" display_order="115" cde="3133734" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240703"/>
+                        <brca_shared:metastatic_breast_carcinoma_fluorescence_in_situ_hybridization_diagnostic_proc_centromere_17_signal_result_range preferred_name="nte_cent_17_signal_number" display_order="116" cde="3132887" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240704"/>
+                        <brca_shared:her2_neu_and_centromere_17_copy_number_metastatic_breast_carcinoma_analysis_input_total_number_count preferred_name="her2_cent17_counted_cells_count" display_order="117" cde="3132899" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240705"/>
+                        <brca_shared:metastatic_breast_carcinoma_her2_neu_chromosone_17_signal_ratio_value preferred_name="nte_cent_17_her2_ratio" display_order="118" cde="3132903" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240706"/>
+                        <brca_shared:metastatic_breast_carcinoma_pos_finding_other_scale_measurement_text preferred_name="nte_cent17_her2_other_scale" display_order="119" cde="3132907" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240707"/>
+                        <brca_shared:metastatic_breast_carcinoma_her2_erbb_pos_finding_fluorescence_in_situ_hybridization_calculation_method_text preferred_name="nte_her2_fish_define_method" display_order="120" cde="3132910" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240708"/>
+                    </brca_nte:new_tumor_event>
+                </brca_nte:new_tumor_events>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </follow_up_v4.0:follow_up>
+        </brca:follow_ups>
+        <rx:drugs>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240730">NO</rx:tx_on_clinical_trial>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-D37268</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">80FE69D1-54B5-44CA-8D96-AFF0EC366BB2</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:days_to_drug_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000"/>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000"/>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240733">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240731">Adriamycin</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240732"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240738">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240743"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240747">NO</rx:tx_on_clinical_trial>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-D37269</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">C8B24AF7-897D-4A58-9CF0-393DEB02542C</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:days_to_drug_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000"/>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000"/>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240750">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240748">Cytoxan</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240749"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240755">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240760"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240764">NO</rx:tx_on_clinical_trial>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-D37270</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">873DD1AD-E816-474B-AE05-EB495268C779</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:days_to_drug_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000"/>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Not Available" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000"/>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240767">Chemotherapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240765">Paclitaxel</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240766"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240772">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240777"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </rx:drug>
+            <rx:drug>
+                <rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2256167">NO</rx:tx_on_clinical_trial>
+                <rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-D37735</rx:bcr_drug_barcode>
+                <rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">F52A9E2B-71AB-4E83-826D-E7307A8EE004</rx:bcr_drug_uuid>
+                <rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rx:days_to_drug_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">263</rx:days_to_drug_therapy_start>
+                <rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">1310</rx:days_to_drug_therapy_end>
+                <rx:therapy_types>
+                    <rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2256170">Hormone Therapy</rx:therapy_type>
+                    <rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:therapy_types>
+                <rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2256168">Anastrozole</rx:drug_name>
+                <rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2256169"/>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <rx:route_of_administrations>
+                    <rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                </rx:route_of_administrations>
+                <rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2256175">NO</rx:therapy_ongoing>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2256180"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </rx:drug>
+        </rx:drugs>
+        <rad:radiations>
+            <rad:radiation>
+                <rad:bcr_radiation_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK-R37267</rad:bcr_radiation_barcode>
+                <rad:bcr_radiation_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">B628417D-C4BC-45CE-968F-80AAE78899EB</rad:bcr_radiation_uuid>
+                <rad:days_to_radiation_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3008313" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_started_days_to" display_order="33" cde_ver="1.000">218</rad:days_to_radiation_therapy_start>
+                <rad:days_to_radiation_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3008333" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_ended_days_to" display_order="17" cde_ver="1.000">262</rad:days_to_radiation_therapy_end>
+                <rad:radiation_type preferred_name="radiation_therapy_type" display_order="4" cde="2842944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240712">External</rad:radiation_type>
+                <rad:radiation_type_notes preferred_name="radiation_type_other" display_order="999" cde="2195477" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                <rad:radiation_dosage preferred_name="radiation_total_dose" display_order="6" cde="2721441" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240714">6100</rad:radiation_dosage>
+                <rad:units preferred_name="radiation_adjuvant_units" display_order="7" cde="61446" cde_ver="3.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240715">cGy</rad:units>
+                <rad:numfractions preferred_name="radiation_adjuvant_fractions_total" display_order="8" cde="61465" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240716">33</rad:numfractions>
+                <rad:anatomic_treatment_site preferred_name="radiation_therapy_site" display_order="5" cde="2793522" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240713">Primary Tumor Field</rad:anatomic_treatment_site>
+                <clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <rad:radiation_treatment_ongoing preferred_name="radiation_therapy_ongoing_indicator" display_order="13" cde="2842745" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="2240721">NO</rad:radiation_treatment_ongoing>
+                <rad:course_number preferred_name="course_number" display_order="999" cde="2732184" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="2240726"/>
+                <clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">6</clin_shared:day_of_form_completion>
+                <clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
+                <clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2012</clin_shared:year_of_form_completion>
+            </rad:radiation>
+        </rad:radiations>
+    </brca:patient>
+</brca:tcga_bcr>

data/gdc_data_organized/1b703058-e596-45bc-80fe-8b98d545c2e2/nationwidechildrens.org_ssf.TCGA-AR-A2LK.xml

@@ -0,0 +1,93 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ssf:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/ssf/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/ssf/2.7/TCGA_BCR.SSF.xsd" schemaVersion="2.7" xmlns:ssf="http://tcga.nci/bcr/xml/ssf/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:ssf_disease="http://tcga.nci/bcr/xml/ssf_disease/2.7">
+    <admin:admin>
+        <admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
+        <admin:file_uuid xsd_ver="2.6">F714A228-BA41-4B43-9700-2B28B0F8624B</admin:file_uuid>
+        <admin:batch_number xsd_ver="1.17">167.75.0</admin:batch_number>
+        <admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
+        <admin:disease_code xsd_ver="2.6">BRCA</admin:disease_code>
+        <admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
+        <admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
+        <admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
+        <admin:patient_withdrawal>
+            <admin:withdrawn>false</admin:withdrawn>
+        </admin:patient_withdrawal>
+        <admin:program xsi:nil="true" xsd_ver="2.7"/>
+        <admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
+    </admin:admin>
+    <ssf:patient>
+        <admin:additional_studies/>
+        <shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-AR-A2LK</shared:bcr_patient_barcode>
+        <shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">1B703058-E596-45BC-80FE-8B98D545C2E2</shared:bcr_patient_uuid>
+        <shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">AR</shared:tissue_source_site>
+        <shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A2LK</shared:patient_id>
+        <shared:hiv_status preferred_name="hiv_status" display_order="9999" cde="2180464" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+        <ssf:tumor_samples>
+            <ssf:tumor_sample>
+                <ssf:bcr_sample_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false">D6F5C34A-0F5C-4AED-977A-74A1E5D50915</ssf:bcr_sample_uuid>
+                <shared:days_to_sample_procurement precision="day" xsd_ver="2.3" tier="" cde="" owner="TSS" procurement_status="Completed" preferred_name="" display_order="9999" cde_ver="">25</shared:days_to_sample_procurement>
+                <shared:method_of_sample_procurement preferred_name="tumor_sample_procurement_method" display_order="11" cde="3103514" cde_ver="1.000" xsd_ver="2.3" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115291">Other Method, specify</shared:method_of_sample_procurement>
+                <shared:other_method_of_sample_procurement preferred_name="cancer_procurement_method_other" display_order="12" cde="2006730" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115292">Wide local excision</shared:other_method_of_sample_procurement>
+                <ssf:vessel_used preferred_name="tumor_sample_vessel_used" display_order="16" cde="3081940" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115294">Other</ssf:vessel_used>
+                <ssf:other_vessel_used preferred_name="tumor_sample_ship_vessel_other" display_order="17" cde="3288137" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115295">Polycon</ssf:other_vessel_used>
+                <shared:maximum_tumor_dimension preferred_name="tumor_resected_max_dimension" display_order="9999" cde="64215" cde_ver="3.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                <ssf:tumor_weight preferred_name="tumor_sample_weight" display_order="23" cde="3081946" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115296">200</ssf:tumor_weight>
+                <ssf:sample_prescreened preferred_name="tumor_sample_prescreened_at_tss" display_order="19" cde="3081942" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115299">YES</ssf:sample_prescreened>
+                <shared:tumor_nuclei_percent preferred_name="tumor_nuclei_percent" display_order="24" cde="2841225" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115297">70</shared:tumor_nuclei_percent>
+                <shared:tumor_necrosis_percent preferred_name="necrosis_percent" display_order="25" cde="2841237" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115298">4</shared:tumor_necrosis_percent>
+                <ssf:days_to_pathology_review precision="day" xsd_ver="2.5" tier="2" cde="3288497" owner="TSS" procurement_status="Completed" preferred_name="tss_pathology_review_days_to" display_order="63" cde_ver="1.000">1333</ssf:days_to_pathology_review>
+                <ssf:path_confirm_tumor_nuclei_metrics preferred_name="tumor_nuclei_requirements_indicator" display_order="64" cde="3288520" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115543">YES</ssf:path_confirm_tumor_nuclei_metrics>
+                <ssf:path_confirm_tumor_necrosis_metrics preferred_name="necrosis_requirements_indicator" display_order="65" cde="3288524" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115544">YES</ssf:path_confirm_tumor_necrosis_metrics>
+                <ssf:path_confirm_report_attached preferred_name="tss_pathology_submitted" display_order="66" cde="3288292" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115546">YES</ssf:path_confirm_report_attached>
+                <ssf:path_confirm_diagnosis_matching preferred_name="histologic_dx_consistent" display_order="68" cde="3288300" cde_ver="1.000" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115545">YES</ssf:path_confirm_diagnosis_matching>
+                <ssf:reason_path_confirm_diagnosis_not_matching preferred_name="histologic_dx_inconsistent_reason" display_order="69" cde="3288315" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <ssf:top_slide_submitted preferred_name="tumor_sample_top_slide_submitted" display_order="999" cde="3081944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115300">YES</ssf:top_slide_submitted>
+                <ssf:digital_image_submitted preferred_name="tumor_sample_image_submitted" display_order="999" cde="3081948" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115301">NO</ssf:digital_image_submitted>
+                <ssf:ffpe_tumor_slide_submitted preferred_name="ffpe_slide_submitted_indicator" display_order="9999" cde="3295811" cde_ver="1.000" xsd_ver="2.5" tier="" owner="TSS" procurement_status="Completed" restricted="false">NO</ssf:ffpe_tumor_slide_submitted>
+                <ssf:submitted_for_lce preferred_name="tumor_sample_bcr_macrodissection" display_order="9999" cde="3288488" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                <shared:other_dx preferred_name="history_other_malignancy" display_order="14" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115548">No</shared:other_dx>
+                <shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="15" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115549">No</shared:history_of_neoadjuvant_treatment>
+                <shared:consent_or_death_status preferred_name="patient_consent_status" display_order="72" cde="3288361" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115550">Consented</shared:consent_or_death_status>
+                <shared:days_to_consent precision="day" xsd_ver="2.5" tier="1" cde="3288498" owner="TSS" procurement_status="Completed" preferred_name="patient_consent_days_to" display_order="76" cde_ver="1.000">32</shared:days_to_consent>
+                <shared:country preferred_name="tumor_sample_procurement_country" display_order="13" cde="3203072" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115293">United States</shared:country>
+                <ssf_disease:disease_details/>
+                <ssf:tumor_histologies>
+                    <ssf:tumor_histology>
+                        <shared:histological_type preferred_name="histologic_diagnosis" display_order="3" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115284">Infiltrating Lobular Carcinoma</shared:histological_type>
+                        <shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="31" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                        <shared:histological_percentage preferred_name="histologic_diagnosis_percent" display_order="9999" cde="3729998" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                        <shared:tumor_morphology_percentage preferred_name="" display_order="9999" cde="3729984" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false" xsi:nil="true"/>
+                    </ssf:tumor_histology>
+                </ssf:tumor_histologies>
+                <ssf:tumor_locations>
+                    <ssf:tumor_focality preferred_name="tumor_focality" display_order="9999" cde="3174022" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
+                    <ssf:laterality preferred_name="" display_order="9999" cde="4742852" cde_ver="" xsd_ver="2.6" tier="" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115287">Right</ssf:laterality>
+                    <ssf:tumor_location>
+                        <ssf:site_of_disease preferred_name="" display_order="9999" cde="4742851" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115287">Breast</ssf:site_of_disease>
+                        <ssf:site_of_disease_text preferred_name="" display_order="9999" cde="4742871" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
+                        <ssf:site_of_disease_description preferred_name="" display_order="9999" cde="4742918" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1115287"/>
+                    </ssf:tumor_location>
+                </ssf:tumor_locations>
+            </ssf:tumor_sample>
+        </ssf:tumor_samples>
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+            <ssf:normal_control>
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+                <ssf:other_method_of_normal_sample_procurement preferred_name="normal_control_method_other" display_order="51" cde="3288151" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="1115430"/>
+                <ssf:days_to_normal_sample_procurement precision="day" xsd_ver="2.3" tier="1" cde="3288496" owner="TSS" procurement_status="Completed" preferred_name="normal_control_procurement_days_to" display_order="55" cde_ver="1.000">35</ssf:days_to_normal_sample_procurement>
+                <ssf:normal_sample_site_proximity_to_tumor preferred_name="normal_control_proximity_to_tumor" display_order="59" cde="3088708" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1115431"/>
+                <ssf:ncedna_dna_conc preferred_name="normal_control_DNA_concentration" display_order="48" cde="3288187" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115422">0.25</ssf:ncedna_dna_conc>
+                <ssf:ncedna_dna_qm preferred_name="normal_control_DNA_quant_method" display_order="47" cde="3288186" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115421">Nanodrop, ND-1000 spectrophotometer</ssf:ncedna_dna_qm>
+                <ssf:ncedna_dna_qty preferred_name="normal_control_DNA_quantity" display_order="46" cde="3288185" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115420">20</ssf:ncedna_dna_qty>
+                <ssf:ncedna_dna_vol preferred_name="normal_control_DNA_volume" display_order="49" cde="3288188" cde_ver="1.000" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="1115423">80</ssf:ncedna_dna_vol>
+                <ssf:normal_control_locations>
+                    <ssf:normal_control_location>
+                        <ssf:normal_tissue_anatomic_site preferred_name="" display_order="57" cde="4132152" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="1115424"/>
+                        <ssf:other_anatomic_site_normal_tissue preferred_name="normal_control_site_other" display_order="58" cde="3288189" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="1115425"/>
+                    </ssf:normal_control_location>
+                </ssf:normal_control_locations>
+            </ssf:normal_control>
+        </ssf:normal_controls>
+    </ssf:patient>
+</ssf:tcga_bcr>

data/gdc_data_organized/1be375fe-5ae5-4e75-a729-69f86a661d9a/05442037-337a-4cb4-89b1-a6d66cef594f.wxs.aliquot_ensemble_masked.maf.gz

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+size 16829

data/gdc_data_organized/1be375fe-5ae5-4e75-a729-69f86a661d9a/TCGA-BRCA.e831ad69-0f96-4d82-a435-6b754e44122f.ascat2.allelic_specific.seg.txt

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+e831ad69-0f96-4d82-a435-6b754e44122f	chr7	134062515	159334314	2	1	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr8	318482	4185575	2	1	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr8	4337999	21185185	2	1	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr8	58513774	59128787	2	1	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr9	9910123	11275208	3	2	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr9	116423499	116770876	2	2	0
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr10	45792	2691763	2	1	1
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+e831ad69-0f96-4d82-a435-6b754e44122f	chr13	112466087	114342922	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	18239283	24220111	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	24220138	24937511	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	24937712	27371129	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	27371244	28709730	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	28712678	56025258	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	56025393	56338721	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	56340384	56940081	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	56940233	57545677	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	57545835	59425265	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	59426279	61185609	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	61187157	62723065	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	62724376	63308966	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	63309571	73755783	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	73756409	74228146	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	74229054	85105042	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	85105428	85745946	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	85748718	87044761	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	87045380	87760859	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	87766202	105537192	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr14	105541843	106877229	3	3	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr15	19811075	101928837	1	1	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr16	10777	4216715	4	3	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr16	4217084	5141836	3	3	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr16	5144489	36048855	4	3	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr16	46441986	90096867	1	1	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	150733	3642937	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	3644021	4230548	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	4230824	32503355	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	32504610	32991529	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	32991811	82696229	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr17	82696249	83091923	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	48133	33045543	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	33048673	33850596	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	33851565	36640653	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	36641114	37331391	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	37331474	57145119	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	57145531	57561729	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	57562015	60423388	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	60424755	60974019	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr18	60974656	80257174	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr19	90910	43159217	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr19	43159472	43588030	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr19	43590370	58586487	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr20	80664	19293138	3	2	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr20	19294687	19471012	3	3	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr20	19472380	44867757	3	2	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr20	44868544	45283387	3	3	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr20	45283861	64324800	3	2	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr21	12973348	27472629	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr21	27472871	28603973	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr21	28604521	28866871	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr21	28867013	29538783	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chr21	29543288	46677045	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chr22	16392123	50796027	1	1	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	251810	4119865	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	4121583	4610404	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	4610606	6490489	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	6491231	8166621	4	3	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	8167012	9577485	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	9579642	23137016	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	23142353	24274098	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	24274271	25517137	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	25521105	55335832	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	55338554	68073491	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	68074401	69185963	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	69188899	70093368	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	70098141	73208522	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	73209344	75207455	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	75208063	81465124	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	81465644	83000159	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	83000486	87432453	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	87432723	88525107	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	88527148	110142864	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	110143711	112012302	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	112014241	114350671	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	114350764	115335228	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	115335691	117037321	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	117037503	118257467	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	118258872	126004705	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	126006735	127967984	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	127968491	144969703	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	144971965	145427490	4	3	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	145427808	146754789	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	146757116	147495940	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	147499744	153360283	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	153360955	155117516	2	2	0
+e831ad69-0f96-4d82-a435-6b754e44122f	chrX	155118276	156004181	2	1	1
+e831ad69-0f96-4d82-a435-6b754e44122f	chrY	2782397	56872112	0	0	0

data/gdc_data_organized/1be375fe-5ae5-4e75-a729-69f86a661d9a/TCGA-D8-A73X-01A-21-A43F-20_RPPA_data.tsv

@@ -0,0 +1,488 @@
+AGID	lab_id	catalog_number	set_id	peptide_target	protein_expression
+AGID00100	882	sc-628	Old	1433BETA	-0.17307
+AGID00111	913	sc-23957	Old	1433EPSILON	0.090891
+AGID00101	883	sc-1019	Old	1433ZETA	0.090045
+AGID00001	2	9452	Old	4EBP1	-0.18014
+AGID00002	3	9456	Old	4EBP1_pS65	-0.63263
+AGID00003	6	9459	Old	4EBP1_pT37T46	-0.092286
+AGID00443	8	9455	Old	4EBP1_pT70	-0.55301
+AGID00120	985	4937	Old	53BP1	0.11622
+AGID00004	13	3661	Old	ACC_pS79	-0.020931
+AGID00005	14	1768-1/ab45174	Old	ACC1	-0.37963
+AGID00408	2372	3658	Set163	AceCS1	0.1038597
+AGID00473	1182	5335	Old	ACETYLATUBULINLYS40	0.91473
+AGID00404	2367	9189	Set163	ACSL1	-0.7462498
+AGID02144	2450	PA5-27081	Old	ACVRL1	-0.1054
+AGID00186	1198	ab88574	Old	ADAR1	-0.13618
+AGID00146	1084	4691	Old	AKT	0.45057
+AGID00028	230	9271	Old	AKT_pS473	1.1122
+AGID00170	1154	2965	Old	AKT_pT308	0.66995
+AGID00316	1800	3063	Set163	Akt2	0.1518552
+AGID00347	2009	8599	Set163	Akt2_pS474	0.3130697
+AGID02215	2577	ab195377	Set163	ALKBH5	-0.06401499
+AGID00498	924	CA1030	Old	ALPHACATENIN	NA
+AGID00287	1630	ABC80	Set163	Ambra1_pS52	0.1146944
+AGID00236	1351	ab129081	Set163	AMPK-a2_pS345	0.2223351
+AGID00006	39	2532	Old	AMPKALPHA	-0.27964
+AGID00007	40	2535	Old	AMPKALPHA_pT172	0.78835
+AGID00193	1208	610066	Old	ANNEXIN1	-0.41004
+AGID00166	1142	610668	Old	ANNEXINVII	0.31148
+AGID00371	756	1852-1/ab52615	Old	AR	1.7867
+AGID00194	1217	4432	Old	ARAF	0.42695
+AGID02191	2507	PA5-39728	Old	ARAF_pS299	0.062494
+AGID00260	1053	sc-32761	Old	ARID1A	0.33072
+AGID00264	1560	HPA029318	Old	ASNS	-0.27935
+AGID00276	1612	3415	Set163	Atg3	0.07019016
+AGID00309	1775	13507	Set163	Atg4B	0.1065297
+AGID00310	1776	12994	Set163	Atg5	0.4322201
+AGID00277	1613	8558	Set163	Atg7	0.2595302
+AGID00242	1363	2873	Old	ATM	0.15218
+AGID02142	2447	13050	Set163	ATM_pS1981	-0.1515149
+AGID00217	1289	ab14748	Set163	ATP5A	-0.1644804
+AGID02145	2451	PA5-43776	Set163	ATP5H	-0.2030048
+AGID02150	2456	13934	Set163	ATR	-0.001892817
+AGID00315	1795	ab178407	Set163	ATR_pS428	0.07074397
+AGID00268	1569	ab97508	Set163	ATRX	0.03013758
+AGID00391	2332	14475	Set163	Aurora-A	-0.6104898
+AGID00392	2333	2914	Set163	Aurora-ABC_pT288_pT232_pT198	-0.1545798
+AGID02195	2512	MA5-27890	Set163	Aurora-B	-0.01903609
+AGID00215	1271	8661	Old	AXL	NA
+AGID02143	2449	8457	Set163	b-Actin	0.27402
+AGID00179	1170	9565	Set163	b-Catenin_pT41_S45	-0.05841478
+AGID00301	1725	14058	Set163	B7-H3	0.4950693
+AGID00302	1726	14572	Set163	B7-H4	0.7178649
+AGID00008	63	9291	Old	BAD_pS112	0.32211
+AGID00009	71	1542-1/ab32371	Old	BAK	-1.0906
+AGID00192	1207	sc-28383	Old	BAP1C4	-0.20932
+AGID00010	73	2772	Old	BAX	-0.13222
+AGID00433	80	M0887	Old	BCL2	0.93307
+AGID00219	1299	PAB8528	Old	BCL2A1	-0.17169
+AGID00012	84	1018-1	Old	BCLXL	-0.29949
+AGID00377	87	sc-10086	Old	BECLIN	0.040366
+AGID00011	75	9562	Old	BETACATENIN	0.042727
+AGID00013	88	1008-1/ab32060	Old	BID	-0.26829
+AGID00180	90	1036-1/ab32158	Old	BIM	0.29153
+AGID00221	1311	610978	Set163	BiP-GRP78	0.1978047
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	0.1568103
+AGID00355	92	1647/ab33899	Old	BRAF	0.16749
+AGID00014	94	2696	Old	BRAF_pS445	0.33135
+AGID00445	761	9012	Old	BRCA2	-0.2654
+AGID00266	1567	13440	Old	BRD4	-0.19429
+AGID00168	1146	2865	Set163	c-Abl_pY412	0.1127495
+AGID00278	1615	3130	Set163	c-IAP2	0.1423351
+AGID00345	1990	5649	Old	CA9	NA
+AGID00265	1565	2862	Old	CABL	-0.036036
+AGID00429	2407	2679	Set163	Calnexin	-0.14558
+AGID00176	1165	9496	Set163	Caspase-8-cleaved	-0.1169749
+AGID00623	111	9665	Old	CASPASE3	-0.51939
+AGID00015	109	9491	Old	CASPASE7CLEAVEDD198	-1.3562
+AGID00118	951	9746	Old	CASPASE8	-0.19609
+AGID00537	935	551246	Old	CASPASE9	NA
+AGID00016	114	3238	Old	CAVEOLIN1	0.15686
+AGID00358	2100	ab76000	Set163	CD134	-0.05589122
+AGID00303	1737	826701	Set163	CD171	-0.4479898
+AGID00410	125	1632-1/ab78237	Old	CD20	-0.39937
+AGID00220	1308	ab28340	Old	CD26	0.010026
+AGID00191	1206	610467	Set163	CD29	0.02507987
+AGID00017	127	M0823	Old	CD31	0.17309
+AGID00369	2174	ab108403	Set163	CD38	-0.2321598
+AGID00359	2104	ab133616	Set163	CD4	-0.861851
+AGID00411	1398	3570	Set163	CD44	-0.3312649
+AGID00237	1352	M070101-2	Set163	CD45	-0.1955299
+AGID00115	937	611016	Old	CD49B	0.13409
+AGID02171	2482	91882	Set163	CD86	0.01742021
+AGID00329	1873	4688	Set163	cdc25C	-0.3014248
+AGID00227	1332	4651	Set163	Cdc42	0
+AGID00422	2396	3387	Set163	Cdc6	-0.1995299
+AGID00501	1007	9112	Old	CDK1	-0.46008
+AGID00293	1658	ab32384	Set163	CDK1_pT14	-0.6445798
+AGID00314	1783	4539	Old	CDK1_pY15	-0.2269
+AGID00423	2397	8064	Set163	CDT1	-0.4695352
+AGID02101	2348	15102	Set163	cGAS	0.05529022
+AGID00447	2410	13460	Set163	CHD1L	0.4782484
+AGID00189	1203	2360	Old	CHK1	-0.13268
+AGID00234	1348	ab79758	Old	CHK1_pS296	-0.14505
+AGID00107	903	2348	Old	CHK1_pS345	0.020511
+AGID00018	146	3440	Old	CHK2	-0.1718
+AGID00019	147	2197	Old	CHK2_pT68	-0.087702
+AGID00527	2078	4952	Old	CIAP	-0.073845
+AGID00350	2018	3793	Set163	CIITA	-0.08449978
+AGID00434	155	9164	Old	CJUN_pS73	0.013771
+AGID00020	157	1522-1/ab32363	Old	CKIT	0.019178
+AGID00400	852	NB100-91714	Old	CLAUDIN7	0.31432
+AGID00466	726	3127	Old	CMET	-0.030059
+AGID00079	727	3129	Old	CMET_pY1235	-0.2251
+AGID00167	161	9402	Old	CMYC	0.070973
+AGID00292	1656	11130-1-AP	Old	COG3	0.39468
+AGID00021	171	sc-20649	Old	COLLAGENVI	0.34957
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	1.30016
+AGID00269	1571	6434	Set163	Coup-TFII	-0.4316898
+AGID00150	1116	4850	Set163	Cox-IV	-0.5698504
+AGID00195	1218	4842	Set163	Cox2	-0.2993998
+AGID00188	803	05-739	Old	CRAF	-0.34611
+AGID00022	179	9427	Old	CRAF_pS338	-0.22126
+AGID00023	181	9197	Set163	Creb	-0.3238809
+AGID00393	2334	9198	Set163	CREB_pS133	0.7368524
+AGID00365	2155	4980	Set163	CSK	-0.2062498
+AGID00367	2160	9201	Set163	CtIP	-0.3425151
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	-0.0375199
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	-1.4356
+AGID00382	194	sc-718	Old	CYCLIND1	-0.05347
+AGID00437	199	sc-25303	Old	CYCLINE1	-0.70979
+AGID00449	202	1142-1	Old	CYCLINE2	-0.19221
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	-0.2388201
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	-0.02575479
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	0.09643017
+AGID00304	1744	ab51601	Set163	DAPK2	0.025285
+AGID00343	1980	6998	Set163	DDB-1	0.3674702
+AGID00427	2402	5583	Set163	DDR1	-0.3264455
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	0.0603102
+AGID00532	1273	Bast Lab	Old	DIRAS3	-0.010326
+AGID00104	891	ab76008	Old	DJ1	0.46875
+AGID02146	2452	4658	Set163	DM-Histone-H3	-0.1212652
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	-0.08968481
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	-0.198065
+AGID00407	2371	13609	Set163	DNA_POLG	-0.2912299
+AGID00399	2344	5032	Set163	DNMT1	-0.2078899
+AGID00409	2373	5391	Set163	DRP1	-0.3648213
+AGID00253	1406	5149	Old	DUSP4	1.6548
+AGID00334	1936	ab76310	Set163	DUSP6	-0.2142701
+AGID00116	940	3218	Old	DVL3	0.17527
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	0.39927
+AGID00135	1060	2332	Old	EEF2	-0.60211
+AGID00136	1061	3692	Old	EEF2K	0.81533
+AGID00152	1120	2232	Old	EGFR	-0.74309
+AGID00450	217	2234	Old	EGFR_pY1068	0.071041
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	-0.20907
+AGID00078	722	9742	Old	EIF4E	-0.017046
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	-0.0304501
+AGID00154	1124	2498	Old	EIF4G	-0.012032
+AGID00027	228	9181	Set163	Elk1_pS383	-0.08927478
+AGID00235	1350	M061329-2	Set163	EMA	1.77433
+AGID00394	2337	3810	Set163	Enolase-1	-0.09961501
+AGID00395	2338	8171	Set163	Enolase-2	0.1786052
+AGID00196	1219	GTX629542	Old	ENY2	NA
+AGID00438	1849	A302-024A	Set163	EphA2	-0.3394198
+AGID00552	2422	6347	Set163	EphA2_pS897	0.1271502
+AGID00553	2423	12677	Set163	EphA2_pY588	0.1338517
+AGID00075	693	556347	Old	EPPK1	1.3786
+AGID00335	238	RM-9101	Old	ERALPHA	4.0758
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	0.70984
+AGID00240	247	MS-671	Old	ERCC1	0.22352
+AGID00239	1355	11331-1-AP	Old	ERCC5	0.47003
+AGID00484	249	sc-154	Old	ERK2	0.0071695
+AGID00372	2193	3552	Set163	Erk5	0.009110228
+AGID00405	2369	13826	Set163	ERRalpha	-0.4336549
+AGID00187	1200	A303-501A	Old	ETS1	-0.79244
+AGID00511	2492	2593	Set163	EVI1	-0.2348054
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	-0.8911698
+AGID02151	2457	8556	Set163	FAK_pY397	0.3220436
+AGID00171	1156	3180	Old	FASN	0.75511
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	-0.3712948
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	0.67174
+AGID00339	1959	4403	Set163	FN14	0.01000523
+AGID02152	2458	20459	Old	FOXM1	-0.90687
+AGID00378	269	9467	Old	FOXO3A	-0.10636
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	0.11791
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	0.02911023
+AGID02213	2575	ab124892	Set163	FTO	0.1118702
+AGID02141	2446	12263	Old	G6PD	-0.62504
+AGID00117	943	3239	Old	GAB2	0.10404
+AGID00412	274	AM4300	Old	GAPDH	-1.0929
+AGID00086	764	558686	Old	GATA3	2.271
+AGID00383	1578	4253	Old	GATA6	NA
+AGID00289	1634	12601-1-AP	Set163	GCLC	0.3854252
+AGID00305	1745	ab124827	Set163	GCLM	-0.07399978
+AGID00212	1263	3305	Old	GCN5L2	NA
+AGID00270	1579	3538	Set163	Gli1	0.2617898
+AGID00263	1520	ab69838	Set163	Gli3	0.5065391
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.4274548
+AGID00387	1617	12793	Set163	Glutamate-D1-2	0.5127991
+AGID00262	1491	ab156876	Set163	Glutaminase	-0.03660984
+AGID00319	1807	4275	Set163	Granzyme-B	0.03152513
+AGID00368	2169	ab183737	Set163	GRB7	0.1223494
+AGID00396	2339	3593	Set163	Grp75	-0.5281148
+AGID00174	1163	9315	Set163	GSK-3B	-0.09871065
+AGID00502	1082	9336	Old	GSK3_pS9	0.76371
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	-0.052866
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	0.6869
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	-0.02687982
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	0.05819516
+AGID00131	1038	MS-325-P1	Old	HER2	0.32376
+AGID00142	299	06-229	Old	HER2_pY1248	-0.032764
+AGID00110	911	sc-285	Old	HER3	0.74128
+AGID00080	728	4791	Old	HER3_pY1289	0.11607
+AGID00103	890	2573	Old	HEREGULIN	-0.18105
+AGID00271	1582	11988	Set163	HES1	0.21301
+AGID00397	2340	2024	Set163	Hexokinase-I	0.19085
+AGID00442	1023	2867	Set163	Hexokinase-II	-0.1216613
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	-0.63572
+AGID00398	2341	3377	Set163	Histone-H3_pS10	-0.1375749
+AGID00332	1901	ab128959	Set163	HLA-DQA1	0.4287789
+AGID00333	1902	14832-1-AP	Set163	HMHA1	-0.9016403
+AGID00035	321	2402	Set163	HSP27	0.2012752
+AGID00036	323	2401	Set163	HSP27_pS82	-0.3156298
+AGID00320	1808	12165	Set163	HSP60	-0.499305
+AGID00037	325	4872	Old	HSP70	-0.13773
+AGID00366	2158	86630	Set163	IDO	-0.7777853
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.15031
+AGID00038	335	3922	Old	IGFBP2	-0.2591
+AGID00090	793	611504	Set163	IGFBP3	0.4857899
+AGID00039	336	3027	Set163	IGFRb	0.4272402
+AGID00336	1949	12153	Set163	IL-6	-0.2507351
+AGID02221	2583	57145	Set163	IMP3	0.02810008
+AGID02153	2459	14543	Old	INPP4B	3.6169
+AGID00272	1586	3025	Set163	IR-b	0.1526602
+AGID00519	2519	4302	Set163	IRF-3	-0.02603453
+AGID00520	2520	4947	Set163	IRF-3_pS396	0.1664697
+AGID00223	1316	sc-497	Old	IRF1	-0.16599
+AGID00092	802	06-248	Old	IRS1	0.032637
+AGID00040	371	4502	Set163	IRS2	-0.1777502
+AGID00250	1394	sc-13157	Old	JAB1	0.0067761
+AGID00256	1413	ab109536	Set163	Jagged1	0.08891575
+AGID00177	1166	3230	Old	JAK2	-0.12201
+AGID00758	377	4671	Old	JNK_pT183Y185	0.24046
+AGID02136	2439	PA5-28262	Old	JNK2	0.4791
+AGID00307	1757	ab10484	Set163	KAP1	0.1616347
+AGID00528	904	2180	Old	KU80	0.098796
+AGID00375	2237	HPA028732	Set163	LAD1	-0.1422248
+AGID00290	1643	IHC-00439	Set163	Lasu1	0.3005652
+AGID00279	1618	4108	Set163	LC3A-B	0.191655
+AGID00042	397	2752	Old	LCK	-0.38002
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	-0.044795
+AGID00244	1367	2568	Set163	LRP6_pS1490	0.002395203
+AGID00439	2424	2796	Set163	Lyn	-0.5793748
+AGID02154	2460	4370	Old	MAPK_pT202Y204	1.5408
+AGID00198	1222	5453	Set163	Mcl-1	-0.2016808
+AGID00288	1633	AB3314P	Set163	MCT4	0.02355009
+AGID00175	1164	3521	Set163	MDM2_pS166	-0.05087477
+AGID00044	417	1235-1/ab32576	Old	MEK1	-0.11214
+AGID00143	1076	9154	Old	MEK1_pS217S221	-0.090889
+AGID00201	1243	9125	Set163	MEK2	0.08349975
+AGID00361	2118	ab51061	Set163	MelanA	-0.1733948
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	-0.08821988
+AGID00337	1951	12711	Set163	MERIT40	0.2625146
+AGID00338	1952	12110	Set163	MERIT40_pS29	0.2902302
+AGID02212	2574	ab195352	Set163	METTL3	0.1850702
+AGID00225	1323	sc-20121	Set163	MIF	0.3812802
+AGID00137	1062	WH0054206M1	Old	MIG6	-0.16807
+AGID00403	2117	ab20663	Set163	MITF	-0.2129852
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	-0.4166686
+AGID00322	1810	11925	Set163	Mitofusin-2	0.5268601
+AGID00389	2324	3515	Set163	MLH1	0.07872008
+AGID00312	1780	14993	Set163	MLKL	-0.5338299
+AGID00402	2359	MAB3328	Set163	MMP14	0.2075502
+AGID00045	435	4022	Set163	MMP2	-0.1185226
+AGID00122	1005	2195	Set163	Mnk1	-0.295181
+AGID00331	1899	sc-377312	Set163	MR1	0.02755504
+AGID00273	1589	ab103319	Set163	MRAP	0.04551023
+AGID00530	440	4847	Old	MRE11	-0.063877
+AGID00390	905	2850	Old	MSH2	-0.44054
+AGID00138	1063	22030002	Old	MSH6	-0.21567
+AGID00299	1675	ab76148	Set163	MSI2	0.2357352
+AGID00232	1344	ab14705	Set163	MTCO1	-0.1217815
+AGID00046	444	2983	Old	MTOR	0.14916
+AGID00047	446	2971	Old	MTOR_pS2448	0.2255
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	0.1424751
+AGID00401	1139	21370002	Old	MYH11	-0.30021
+AGID00291	1647	3403	Old	MYOSINIIA	NA
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	0.18333
+AGID00318	1803	4282	Set163	Myt1	-0.09183003
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	-0.55128
+AGID00156	1126	3217	Old	NDRG1_pT346	-0.20234
+AGID02133	2436	PA5-45913	Set163	NDUFB4	-0.06344977
+AGID00134	1046	22710002	Old	NF2	-0.3305
+AGID00048	457	3033	Old	NFKBP65_pS536	-0.61604
+AGID02155	2461	3608	Old	NOTCH1	-0.34636
+AGID00340	1969	4147	Set163	Notch1-cleaved	0.06459498
+AGID00087	767	sc-5593	Set163	Notch3	0.0495202
+AGID00258	1420	3187	Set163	NQO1	0.363635
+AGID00162	1136	sc-31	Old	NRAS	-0.18583
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	-0.1513948
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	0.67566
+AGID00384	470	sc-6246	Old	P21	0.41354
+AGID00105	897	1591-1/ab32034	Old	P27	0.37631
+AGID00096	842	AF1555	Old	P27_pT157	0.077126
+AGID00099	878	ab64949	Old	P27_pT198	-0.12415
+AGID00181	1175	9228	Set163	p38-a	0.1180791
+AGID00098	479	9211	Old	P38_pT180Y182	0.20003
+AGID00049	478	9212	Old	P38MAPK	0.30657
+AGID00151	1119	4695	Set163	p44-42-MAPK	0.2722352
+AGID00050	481	9282	Old	P53	-0.14531
+AGID00490	1187	610833	Old	P62LCKLIGAND	-0.7163
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	-0.40836
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	0.132
+AGID00085	759	9347	Old	P90RSK	0.4642
+AGID00531	770	9344	Old	P90RSK_pT359S363	-0.039618
+AGID00182	1178	9346	Set163	p90RSK_pT573	-0.1300799
+AGID00053	499	612024	Old	PAI1	-0.34755
+AGID00224	1322	HPA035895	Set163	PAICS	-0.2162098
+AGID00323	1811	2602	Set163	PAK1	-0.0517402
+AGID02199	2517	PA5-69540	Set163	PAK4	0.2390351
+AGID00245	1370	4336-BPC-100	Set163	PAR	-1.09726
+AGID00374	2209	66564	Set163	PARG	-0.23221
+AGID00370	1372	sc-7150	Old	PARP1	NA
+AGID00468	501	9546	Old	PARPCLEAVED	-0.63211
+AGID00274	1591	ab53715	Set163	Patched	0.1290802
+AGID00513	2486	60433	Set163	PAX6	-0.2994799
+AGID00441	1621	9857	Set163	PAX8	0.1033238
+AGID00054	504	2542	Old	PAXILLIN	-0.084384
+AGID00055	509	2130	Old	PCADHERIN	0.13519
+AGID00248	511	ab29	Old	PCNA	0.0027501
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	2.0694
+AGID00385	1225	3169	Set163	PDGFRB	0.3383952
+AGID00210	1258	ab110332	Set163	PDH	0.05908407
+AGID00324	1817	3205	Set163	PDHA1	-0.1141554
+AGID00280	1622	3820	Set163	PDHK1	-0.01376978
+AGID00056	515	3062	Old	PDK1	0.35819
+AGID00057	516	3061	Old	PDK1_pS241	0.54389
+AGID00300	1234	sc-19090	Old	PDL1	-0.30669
+AGID00124	1017	2780	Old	PEA15	0.17011
+AGID00125	1018	44-836G	Old	PEA15_pS116	-0.39038
+AGID00440	2429	3192	Set163	PERK	-0.5004104
+AGID02207	2569	ab192876	Set163	PGM1	0.08039957
+AGID00281	1623	13428	Set163	PHGDH	0.006269603
+AGID00425	2399	22789-1-AP	Set163	PHLPP	-0.04204977
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	-0.03675978
+AGID00093	808	4255	Old	PI3KP110ALPHA	0.2965
+AGID00058	523	06-195	Old	PI3KP85	0.18383
+AGID00296	1667	5675	Set163	PKA-a	-0.2884949
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	0.1222802
+AGID00172	529	05-154	Old	PKCALPHA	-0.46313
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.11954
+AGID00114	932	07-875	Old	PKCDELTA_pS664	0.11071
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	0.22792
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	-0.1269606
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	-0.08911494
+AGID00084	754	4513	Set163	PLK1	-0.8596198
+AGID00203	1246	22510002	Set163	PMS2	0.3817302
+AGID00207	1254	ab14734	Set163	Porin	-0.1075398
+AGID00381	549	1483-1/ab32085	Old	PR	0.44129
+AGID00081	738	AHO1031	Set163	PRAS40	0.00863023
+AGID00082	739	44-1100G	Old	PRAS40_pT246	0.11017
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	0.0831202
+AGID00492	1205	HPA007730	Old	PRDX1	-0.0045367
+AGID00190	1204	ab102739	Old	PREX1	1.3609
+AGID00061	566	9552	Old	PTEN	0.27832
+AGID00364	2154	ab76942	Set163	PTPN12	-0.1738099
+AGID00218	1290	4976	Set163	Puma	0.4904752
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	0.2680546
+AGID00145	1083	3539	Old	RAB11	-0.10564
+AGID00169	1150	4314	Old	RAB25	0.48692
+AGID00342	1979	24555	Set163	Rad23A	0.1162351
+AGID00261	987	05-525	Old	RAD50	-0.0147
+AGID00360	579	NA71	Old	RAD51	-0.65977
+AGID00158	1128	2280	Old	RAPTOR	-0.11477
+AGID00059	552	9309	Old	RB	-0.15857
+AGID00060	557	9308	Old	RB_pS807S811	0.31541
+AGID00164	1138	21390002	Old	RBM15	0.092352
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	0.1328701
+AGID00159	1129	2114	Old	RICTOR	-0.20092
+AGID00160	1130	3806	Old	RICTOR_pT1135	-0.16388
+AGID00282	1624	4926	Set163	RIP	0.1786452
+AGID00283	1625	13526	Set163	RIP3	0.08414948
+AGID00416	1368	2208	Set163	RPA32	0.1242552
+AGID00246	1375	A300-245A	Set163	RPA32_pS4_S8	0.08458913
+AGID00341	1978	3388	Set163	RRM1	-0.06304499
+AGID00344	1981	PA5-27856	Set163	RRM2	-0.1831964
+AGID00554	2425	8408	Set163	RSK1	0.6217424
+AGID00353	2031	13018	Set163	S100A4	0.05183522
+AGID00330	1874	2317	Old	S6	-0.48009
+AGID00062	600	2211	Old	S6_pS235S236	-0.599
+AGID00063	601	2215	Old	S6_pS240S244	-0.63412
+AGID00157	1127	sc-58420	Old	SCD1	-0.43291
+AGID00230	1339	11998	Set163	SDHA	0.3190102
+AGID00294	1039	ab69836	Old	SETD2	-0.28974
+AGID00161	1131	32-4500	Old	SF2	-0.21109
+AGID02179	2495	3534	Set163	SFRP1	-0.03883581
+AGID00431	2411	12103	Set163	SGK1	-0.1863505
+AGID00430	2409	8156	Set163	SGK3	1.056595
+AGID02168	2476	bs-3413R	Old	SHC_pY317	0.52559
+AGID00376	2241	3397	Set163	SHP2	-0.13202
+AGID00183	1180	3751	Old	SHP2_pY542	0.16101
+AGID02208	2570	ab8120	Set163	SIRP-alpha	-0.3631254
+AGID00222	1133	sc-99002	Old	SLC1A5	NA
+AGID00255	1411	sc-136891	Set163	Slfn11	-0.3025899
+AGID00064	610	2954	Old	SMAC	-0.24875
+AGID00113	922	1649-1/ab33902	Old	SMAD1	0.018967
+AGID00091	796	1735-1/ab40854	Old	SMAD3	-0.62208
+AGID02160	2467	46535	Old	SMAD4	-0.033648
+AGID00065	616	3895	Old	SNAIL	-0.11099
+AGID00325	1818	4266	Set163	SOD1	0.3113187
+AGID00380	1328	13141	Set163	SOD2	-0.640895
+AGID00298	1670	2748	Set163	Sox2	-0.16191
+AGID00066	621	05-184	Old	SRC	-0.14889
+AGID02157	2463	6943	Old	SRC_pY416	-0.13906
+AGID00068	626	2105	Old	SRC_pY527	0.31621
+AGID00185	1197	4904	Set163	Stat3	0.2990671
+AGID00388	637	9131	Old	STAT3_pY705	0.23406
+AGID00069	638	1289-1/ab32043	Old	STAT5ALPHA	0.50646
+AGID00077	718	1972-1/ab52630	Old	STATHMIN	-0.24233
+AGID00357	2099	13647	Set163	STING	0.003225229
+AGID00128	1033	sc-1240	Old	SYK	-0.34549
+AGID00070	646	05-348	Set163	Tau	0.4883552
+AGID00327	777	2149	Old	TAZ	-0.157
+AGID00228	1333	7495	Set163	TFAM	0.1319139
+AGID00165	1140	22500002	Old	TFRC	-1.6005
+AGID00149	1107	S1711/ab137573	Old	TIGAR	-0.38987
+AGID00109	908	MS-224-P1	Old	TRANSGLUTAMINASE	-0.83231
+AGID00406	2370	612344	Set163	TRAP1	-0.03456978
+AGID00559	2537	PA5-34561	Set163	TRIM24	0.01432298
+AGID00306	1756	ab167154	Set163	TRIM25	-0.2599955
+AGID00426	2400	PA5-52193	Set163	TRIP13	-0.3740148
+AGID00155	1125	4906	Old	TSC1	0.083093
+AGID00144	1081	2044-1/ab76013	Old	TTF1	NA
+AGID00071	670	1613-1/ab32554	Old	TUBERIN	0.31125
+AGID02194	2511	ab109403	Old	TUBERIN_pT1462	0.30774
+AGID00417	1842	ab173300	Set163	TUFM	-0.1390798
+AGID00238	1353	sc-81417	Set163	Twist	0.1362702
+AGID00436	1080	5585	Set163	Tyro3	-0.1135103
+AGID00295	1662	5546	Set163	U-Histone-H2B	1.244725
+AGID00214	1270	HPA005651	Set163	UBAC1	0.1364451
+AGID00351	2020	sc-136145	Set163	UBQLN4	0.02306021
+AGID00213	1267	sc-271268	Set163	UGT1A	0.07029523
+AGID00284	1626	6888	Set163	ULK1_pS757	0.4275323
+AGID00208	1256	MS304/ab14745	Set163	UQCRC2	-0.0691298
+AGID00313	1781	13115	Set163	UVRAG	-0.07201978
+AGID00073	678	3112	Set163	VASP	-0.3787301
+AGID00184	1181	2502	Set163	VAV1	-0.5846557
+AGID00074	688	2479	Old	VEGFR2	0.71934
+AGID00421	2394	68547	Set163	VHL	-0.06852978
+AGID00231	1343	SAB4200080	Set163	Vinculin	0.5663098
+AGID00317	1802	4936	Set163	Wee1	0.712734
+AGID00354	2058	4910	Set163	Wee1_pS642	-0.03184002
+AGID00285	1627	12124	Set163	WIPI1	0.001780204
+AGID00286	1628	8567	Set163	WIPI2	0.09534523
+AGID02214	2576	ab195380	Set163	WTAP	0.01239952
+AGID00133	1044	sc-32136	Old	XBP1	-0.17453
+AGID00076	699	2042	Set163	XIAP	0.004029693
+AGID00241	1359	sc-56813	Set163	XPA	0.2149152
+AGID00349	1354	ab3299	Set163	XPF	0.0142476
+AGID02137	2440	PA5-29359	Old	XRCC1	0.22324
+AGID00088	780	sc-15407	Old	YAP	-0.3158
+AGID00089	782	4911	Old	YAP_pS127	-0.19908
+AGID00504	700	17250002	Old	YB1	-0.22909
+AGID00095	835	2900	Old	YB1_pS102	-0.24391
+AGID02217	2579	ab220163	Set163	YTHDF2	0.0575152
+AGID02210	2572	ab220161	Set163	YTHDF3	-0.1472898
+AGID00326	1828	2705	Set163	ZAP-70	-0.8385669
+AGID00432	2244	sc-25388	Set163	ZEB1	-0.0568415

data/gdc_data_organized/1be375fe-5ae5-4e75-a729-69f86a661d9a/TCGA-D8-A73X-01Z-00-DX1.5F0DF75C-594C-42DF-BE3F-E00E5E01DCD6.svs

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data/gdc_data_organized/1be375fe-5ae5-4e75-a729-69f86a661d9a/bce8e1de-d465-448e-b7ad-88f3c383d94f.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	206351	20139.487356	N
+hsa-let-7a-2	205100	20017.392000	N
+hsa-let-7a-3	206263	20130.898714	N
+hsa-let-7b	381563	37239.864182	N
+hsa-let-7c	36311	3543.888449	N
+hsa-let-7d	2125	207.396187	N
+hsa-let-7e	16900	1649.409677	N
+hsa-let-7f-1	62787	6127.898545	N
+hsa-let-7f-2	63089	6157.373203	N
+hsa-let-7g	3918	382.389770	N
+hsa-let-7i	2808	274.055762	N
+hsa-mir-1-1	13	1.268777	N
+hsa-mir-1-2	11	1.073580	N
+hsa-mir-100	33978	3316.191835	N
+hsa-mir-101-1	111293	10861.997113	N
+hsa-mir-101-2	112412	10971.209505	N
+hsa-mir-103a-1	75998	7417.268441	Y
+hsa-mir-103a-2	75257	7344.948170	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	0	0.000000	N
+hsa-mir-105-2	0	0.000000	N
+hsa-mir-106a	89	8.686240	Y
+hsa-mir-106b	2213	215.984829	N
+hsa-mir-107	522	50.946263	Y
+hsa-mir-10a	157993	15419.833322	N
+hsa-mir-10b	838428	81829.068454	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	87	8.491044	N
+hsa-mir-1181	1	0.097598	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	6	0.585589	N
+hsa-mir-1185-2	0	0.000000	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
+hsa-mir-1199	0	0.000000	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	2	0.195196	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	3	0.292795	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	8	0.780786	N
+hsa-mir-1229	4	0.390393	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	1	0.097598	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	0	0.000000	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	17	1.659169	N
+hsa-mir-1245b	1	0.097598	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	63	6.148687	N
+hsa-mir-1248	1	0.097598	N
+hsa-mir-1249	15	1.463973	N
+hsa-mir-1250	0	0.000000	N
+hsa-mir-1251	2	0.195196	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	3	0.292795	N
+hsa-mir-1254-2	1	0.097598	N
+hsa-mir-1255a	1	0.097598	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	0	0.000000	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	6	0.585589	N
+hsa-mir-125a	7675	749.066229	N
+hsa-mir-125b-1	3128	305.287188	N
+hsa-mir-125b-2	3380	329.881935	N
+hsa-mir-126	5406	527.615900	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	0	0.000000	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	5	0.487991	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	1	0.097598	N
+hsa-mir-1266	34	3.318339	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	0	0.000000	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	10259	1001.259993	N
+hsa-mir-1270	5	0.487991	N
+hsa-mir-1271	6	0.585589	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	0	0.000000	N
+hsa-mir-1276	0	0.000000	N
+hsa-mir-1277	3	0.292795	N
+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	496	48.408710	N
+hsa-mir-128-2	308	30.060247	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	0	0.000000	N
+hsa-mir-1283-2	0	0.000000	N
+hsa-mir-1284	3	0.292795	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	158	15.420517	N
+hsa-mir-1288	2	0.195196	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	1	0.097598	N
+hsa-mir-129-2	2	0.195196	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	0	0.000000	N
+hsa-mir-1292	2	0.195196	N
+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	4	0.390393	N
+hsa-mir-1295a	5	0.487991	N
+hsa-mir-1295b	0	0.000000	N
+hsa-mir-1296	32	3.123143	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	29	2.830348	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	0	0.000000	N
+hsa-mir-1304	0	0.000000	N
+hsa-mir-1305	1	0.097598	N
+hsa-mir-1306	11	1.073580	N
+hsa-mir-1307	5445	531.422230	N
+hsa-mir-130a	760	74.174636	N
+hsa-mir-130b	45	4.391919	N
+hsa-mir-132	486	47.432728	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	4	0.390393	Y
+hsa-mir-133a-2	4	0.390393	Y
+hsa-mir-133b	3	0.292795	Y
+hsa-mir-134	2332	227.599016	N
+hsa-mir-1343	0	0.000000	N
+hsa-mir-135a-1	12	1.171178	N
+hsa-mir-135a-2	16	1.561571	N
+hsa-mir-135b	8	0.780786	N
+hsa-mir-136	384	37.477711	N
+hsa-mir-137	3	0.292795	N
+hsa-mir-138-1	0	0.000000	N
+hsa-mir-138-2	0	0.000000	N
+hsa-mir-139	145	14.151740	N
+hsa-mir-140	5332	520.393633	N
+hsa-mir-141	11451	1117.597054	N
+hsa-mir-142	2993	292.111430	N
+hsa-mir-143	257316	25113.579912	N
+hsa-mir-144	1030	100.526152	N
+hsa-mir-145	3984	388.831252	N
+hsa-mir-1468	28	2.732750	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	369	36.013738	N
+hsa-mir-146b	2670	260.587209	N
+hsa-mir-1470	0	0.000000	N
+hsa-mir-1471	0	0.000000	N
+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	2	0.195196	N
+hsa-mir-148a	306401	29904.187841	N
+hsa-mir-148b	836	81.592100	N
+hsa-mir-149	624	60.901280	N
+hsa-mir-150	842	82.177689	N
+hsa-mir-151a	9997	975.689263	N
+hsa-mir-151b	4	0.390393	N
+hsa-mir-152	2254	219.986356	N
+hsa-mir-153-1	4	0.390393	N
+hsa-mir-153-2	36	3.513535	N
+hsa-mir-1537	0	0.000000	N
+hsa-mir-1538	0	0.000000	N
+hsa-mir-1539	1	0.097598	N
+hsa-mir-154	64	6.246285	N
+hsa-mir-155	816	79.640136	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	848	82.763278	N
+hsa-mir-15b	841	82.080091	N
+hsa-mir-16-1	803	78.371359	N
+hsa-mir-16-2	795	77.590574	N
+hsa-mir-17	3635	354.769478	Y
+hsa-mir-181a-1	10086	984.375503	N
+hsa-mir-181a-2	12794	1248.671444	N
+hsa-mir-181b-1	1460	142.493380	N
+hsa-mir-181b-2	1527	149.032460	N
+hsa-mir-181c	1751	170.894458	N
+hsa-mir-181d	405	39.527273	N
+hsa-mir-182	508052	49584.963630	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	123638	12066.846963	N
+hsa-mir-184	228	22.252391	N
+hsa-mir-185	397	38.746488	N
+hsa-mir-186	855	83.446466	N
+hsa-mir-187	14	1.366375	N
+hsa-mir-188	4	0.390393	N
+hsa-mir-18a	24	2.342357	N
+hsa-mir-18b	1	0.097598	N
+hsa-mir-1908	0	0.000000	N
+hsa-mir-1909	0	0.000000	N
+hsa-mir-190a	55	5.367901	N
+hsa-mir-190b	225	21.959596	N
+hsa-mir-191	4200	409.912464	N
+hsa-mir-1910	1	0.097598	N
+hsa-mir-1911	0	0.000000	N
+hsa-mir-1912	0	0.000000	N
+hsa-mir-1913	0	0.000000	N
+hsa-mir-1914	0	0.000000	N
+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	1191	116.239463	Y
+hsa-mir-193a	2891	282.156413	N
+hsa-mir-193b	751	73.296253	N
+hsa-mir-194-1	472	46.066353	N
+hsa-mir-194-2	524	51.141460	N
+hsa-mir-195	550	53.679013	N
+hsa-mir-196a-1	4956	483.696708	N
+hsa-mir-196a-2	5258	513.171366	N
+hsa-mir-196b	795	77.590574	N
+hsa-mir-197	1105	107.846017	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	59	5.758294	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	23217	2265.937543	Y
+hsa-mir-199a-2	35358	3450.877359	Y
+hsa-mir-199b	39147	3820.676961	Y
+hsa-mir-19a	108	10.540606	N
+hsa-mir-19b-1	417	40.698452	N
+hsa-mir-19b-2	362	35.330550	N
+hsa-mir-200a	6380	622.676553	N
+hsa-mir-200b	6301	614.966294	N
+hsa-mir-200c	72341	7060.351802	N
+hsa-mir-202	8	0.780786	N
+hsa-mir-203a	45061	4397.872750	N
+hsa-mir-203b	126	12.297374	N
+hsa-mir-204	6	0.585589	N
+hsa-mir-205	35014	3417.303576	N
+hsa-mir-2052	0	0.000000	N
+hsa-mir-2053	0	0.000000	N
+hsa-mir-2054	0	0.000000	N
+hsa-mir-206	0	0.000000	N
+hsa-mir-208a	0	0.000000	N
+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	1752	170.992056	N
+hsa-mir-20b	144	14.054142	N
+hsa-mir-21	3077115	300320.902901	N
+hsa-mir-210	903	88.131180	N
+hsa-mir-211	13	1.268777	N
+hsa-mir-2110	6	0.585589	N
+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	8	0.780786	N
+hsa-mir-2115	5	0.487991	N
+hsa-mir-2116	4	0.390393	N
+hsa-mir-2117	0	0.000000	N
+hsa-mir-212	19	1.854366	N
+hsa-mir-214	498	48.603906	N
+hsa-mir-215	8	0.780786	Y
+hsa-mir-216a	3	0.292795	N
+hsa-mir-216b	0	0.000000	N
+hsa-mir-217	49	4.782312	N
+hsa-mir-218-1	103	10.052615	N
+hsa-mir-218-2	100	9.759821	N
+hsa-mir-219a-1	12	1.171178	N
+hsa-mir-219a-2	0	0.000000	N
+hsa-mir-219b	0	0.000000	N
+hsa-mir-22	611161	59648.217027	N
+hsa-mir-221	720	70.270708	N
+hsa-mir-222	150	14.639731	N
+hsa-mir-223	559	54.557397	N
+hsa-mir-224	7	0.683187	N
+hsa-mir-2276	1	0.097598	N
+hsa-mir-2277	3	0.292795	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	288	28.108283	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	18340	1789.951094	Y
+hsa-mir-23b	6537	637.999471	Y
+hsa-mir-23c	0	0.000000	N
+hsa-mir-24-1	3563	347.742407	N
+hsa-mir-24-2	3554	346.864023	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	50151	4894.647617	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	0	0.000000	N
+hsa-mir-26a-1	9251	902.881001	N
+hsa-mir-26a-2	9070	885.215726	N
+hsa-mir-26b	5224	509.853027	N
+hsa-mir-27a	8756	854.569890	Y
+hsa-mir-27b	9423	919.667893	Y
+hsa-mir-28	26521	2588.402015	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	85	8.295847	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	34	3.318339	N
+hsa-mir-29a	51493	5025.624409	N
+hsa-mir-29b-1	1883	183.777421	Y
+hsa-mir-29b-2	2392	233.454908	N
+hsa-mir-29c	34441	3361.379804	Y
+hsa-mir-300	0	0.000000	N
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+hsa-mir-302f	0	0.000000	N
+hsa-mir-3064	4	0.390393	N
+hsa-mir-3065	345	33.671381	N
+hsa-mir-3074	22	2.147161	N
+hsa-mir-30a	1525976	148932.519625	Y
+hsa-mir-30b	2049	199.978724	Y
+hsa-mir-30c-1	3202	312.509455	Y
+hsa-mir-30c-2	4433	432.652846	Y
+hsa-mir-30d	44304	4323.990908	N
+hsa-mir-30e	53639	5235.070158	Y
+hsa-mir-31	54	5.270303	N
+hsa-mir-3115	0	0.000000	N
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+hsa-mir-3118-1	0	0.000000	N
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+hsa-mir-3118-3	0	0.000000	N
+hsa-mir-3118-4	0	0.000000	N
+hsa-mir-3119-1	0	0.000000	N
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+hsa-mir-3126	1	0.097598	N
+hsa-mir-3127	23	2.244759	N
+hsa-mir-3128	0	0.000000	N
+hsa-mir-3129	3	0.292795	N
+hsa-mir-3130-1	6	0.585589	N
+hsa-mir-3130-2	4	0.390393	N
+hsa-mir-3131	0	0.000000	N
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+hsa-mir-3134	0	0.000000	N
+hsa-mir-3135a	0	0.000000	N
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+hsa-mir-3156-3	0	0.000000	N
+hsa-mir-3157	3	0.292795	N
+hsa-mir-3158-1	0	0.000000	N
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+hsa-mir-3159	1	0.097598	N
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+hsa-mir-3171	0	0.000000	N
+hsa-mir-3173	1	0.097598	N
+hsa-mir-3174	0	0.000000	N
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+hsa-mir-3180-2	0	0.000000	N
+hsa-mir-3180-3	0	0.000000	N
+hsa-mir-3180-4	1	0.097598	N
+hsa-mir-3180-5	0	0.000000	N
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+hsa-mir-3188	0	0.000000	N
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+hsa-mir-3190	1	0.097598	N
+hsa-mir-3191	2	0.195196	N
+hsa-mir-3192	0	0.000000	N
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+hsa-mir-3194	0	0.000000	N
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+hsa-mir-3199-1	2	0.195196	N
+hsa-mir-3199-2	3	0.292795	N
+hsa-mir-32	161	15.713311	N
+hsa-mir-3200	2	0.195196	N
+hsa-mir-3201	0	0.000000	N
+hsa-mir-3202-1	0	0.000000	N
+hsa-mir-3202-2	1	0.097598	N
+hsa-mir-320a	3994	389.807234	Y
+hsa-mir-320b-1	17	1.659169	Y
+hsa-mir-320b-2	20	1.951964	Y
+hsa-mir-320c-1	9	0.878384	N
+hsa-mir-320c-2	5	0.487991	N
+hsa-mir-320d-1	6	0.585589	N
+hsa-mir-320d-2	4	0.390393	N
+hsa-mir-320e	2	0.195196	N
+hsa-mir-323a	26	2.537553	N
+hsa-mir-323b	10	0.975982	N
+hsa-mir-324	182	17.762873	N
+hsa-mir-325	0	0.000000	N
+hsa-mir-326	18	1.756768	N
+hsa-mir-328	125	12.199776	N
+hsa-mir-329-1	6	0.585589	N
+hsa-mir-329-2	1	0.097598	N
+hsa-mir-330	133	12.980561	N
+hsa-mir-331	94	9.174231	N
+hsa-mir-335	334	32.597801	N
+hsa-mir-337	281	27.425096	N
+hsa-mir-338	692	67.537958	N
+hsa-mir-339	239	23.325971	N
+hsa-mir-33a	43	4.196723	N
+hsa-mir-33b	34	3.318339	N
+hsa-mir-340	141	13.761347	N
+hsa-mir-342	2266	221.157534	N
+hsa-mir-345	38	3.708732	N
+hsa-mir-346	2	0.195196	N
+hsa-mir-34a	906	88.423974	N
+hsa-mir-34b	3	0.292795	N
+hsa-mir-34c	40	3.903928	N
+hsa-mir-3529	0	0.000000	N
+hsa-mir-3591	0	0.000000	N
+hsa-mir-3605	6	0.585589	N
+hsa-mir-3606	0	0.000000	N
+hsa-mir-3607	130	12.687767	N
+hsa-mir-3609	0	0.000000	N
+hsa-mir-361	2136	208.469767	N
+hsa-mir-3610	1	0.097598	N
+hsa-mir-3611	0	0.000000	N
+hsa-mir-3612	0	0.000000	N
+hsa-mir-3613	35	3.415937	N
+hsa-mir-3614	2	0.195196	N
+hsa-mir-3615	25	2.439955	N
+hsa-mir-3616	0	0.000000	N
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+hsa-mir-3648-2	0	0.000000	N
+hsa-mir-3649	0	0.000000	N
+hsa-mir-3650	2	0.195196	N
+hsa-mir-3651	6	0.585589	N
+hsa-mir-3652	3	0.292795	N
+hsa-mir-3653	9	0.878384	N
+hsa-mir-3654	2	0.195196	N
+hsa-mir-3655	1	0.097598	N
+hsa-mir-3656	0	0.000000	N
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+hsa-mir-3659	0	0.000000	N
+hsa-mir-365a	427	41.674434	Y
+hsa-mir-365b	430	41.967228	Y
+hsa-mir-3660	1	0.097598	N
+hsa-mir-3661	0	0.000000	N
+hsa-mir-3662	0	0.000000	N
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+hsa-mir-3665	0	0.000000	N
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+hsa-mir-3675	0	0.000000	N
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+hsa-mir-3678	5	0.487991	N
+hsa-mir-3679	0	0.000000	N
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+hsa-mir-3683	0	0.000000	N
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+hsa-mir-376a-2	6	0.585589	N
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+hsa-mir-376c	57	5.563098	Y
+hsa-mir-377	31	3.025544	N
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+hsa-mir-379	8920	870.575995	N
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+hsa-mir-3910-2	1	0.097598	N
+hsa-mir-3911	0	0.000000	N
+hsa-mir-3912	12	1.171178	N
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+hsa-mir-3913-2	22	2.147161	N
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+hsa-mir-3914-2	0	0.000000	N
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+hsa-mir-3926-2	12	1.171178	N
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+hsa-mir-3929	0	0.000000	N
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+hsa-mir-3938	0	0.000000	N
+hsa-mir-3939	1	0.097598	N
+hsa-mir-3940	2	0.195196	N
+hsa-mir-3941	1	0.097598	N
+hsa-mir-3942	1	0.097598	N
+hsa-mir-3943	1	0.097598	N
+hsa-mir-3944	1	0.097598	N
+hsa-mir-3945	0	0.000000	N
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+hsa-mir-3978	0	0.000000	N
+hsa-mir-409	275	26.839507	N
+hsa-mir-410	151	14.737329	N
+hsa-mir-411	84	8.198249	N
+hsa-mir-412	10	0.975982	N
+hsa-mir-421	6	0.585589	N
+hsa-mir-422a	0	0.000000	N
+hsa-mir-423	630	61.486870	N
+hsa-mir-424	310	30.255444	N
+hsa-mir-425	1302	127.072864	N
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+hsa-mir-429	601	58.656522	N
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+hsa-mir-4308	0	0.000000	N
+hsa-mir-4309	0	0.000000	N
+hsa-mir-431	62	6.051089	N
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+hsa-mir-4311	0	0.000000	N
+hsa-mir-4312	0	0.000000	N
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+hsa-mir-4314	0	0.000000	N
+hsa-mir-4315-1	0	0.000000	N
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+hsa-mir-4318	0	0.000000	N
+hsa-mir-4319	0	0.000000	N
+hsa-mir-432	39	3.806330	N
+hsa-mir-4320	0	0.000000	N
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+hsa-mir-4322	0	0.000000	N
+hsa-mir-4323	0	0.000000	N
+hsa-mir-4324	0	0.000000	N
+hsa-mir-4325	0	0.000000	N
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+hsa-mir-4327	0	0.000000	N
+hsa-mir-4328	0	0.000000	N
+hsa-mir-4329	0	0.000000	N
+hsa-mir-433	11	1.073580	N
+hsa-mir-4330	0	0.000000	N
+hsa-mir-4417	0	0.000000	N
+hsa-mir-4418	0	0.000000	N
+hsa-mir-4419a	0	0.000000	N
+hsa-mir-4419b	0	0.000000	N
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+hsa-mir-4421	0	0.000000	N
+hsa-mir-4422	0	0.000000	N
+hsa-mir-4423	0	0.000000	N
+hsa-mir-4424	0	0.000000	N
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+hsa-mir-514a-3	6	0.585589	N
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+hsa-mir-6824	0	0.000000	N
+hsa-mir-6825	0	0.000000	N
+hsa-mir-6826	0	0.000000	N
+hsa-mir-6827	0	0.000000	N
+hsa-mir-6828	0	0.000000	N
+hsa-mir-6829	0	0.000000	N
+hsa-mir-6830	0	0.000000	N
+hsa-mir-6831	0	0.000000	N
+hsa-mir-6832	0	0.000000	N
+hsa-mir-6833	0	0.000000	N
+hsa-mir-6834	0	0.000000	N
+hsa-mir-6835	0	0.000000	N
+hsa-mir-6836	0	0.000000	N
+hsa-mir-6837	4	0.390393	N
+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	0	0.000000	N
+hsa-mir-6840	0	0.000000	N
+hsa-mir-6841	0	0.000000	N
+hsa-mir-6842	9	0.878384	N
+hsa-mir-6843	0	0.000000	N
+hsa-mir-6844	0	0.000000	N
+hsa-mir-6845	0	0.000000	N
+hsa-mir-6846	0	0.000000	N
+hsa-mir-6847	0	0.000000	N
+hsa-mir-6848	0	0.000000	N
+hsa-mir-6849	0	0.000000	N
+hsa-mir-6850	0	0.000000	N
+hsa-mir-6851	0	0.000000	N
+hsa-mir-6852	1	0.097598	N
+hsa-mir-6853	0	0.000000	N
+hsa-mir-6854	8	0.780786	N
+hsa-mir-6855	0	0.000000	N
+hsa-mir-6856	0	0.000000	N
+hsa-mir-6857	0	0.000000	N
+hsa-mir-6858	0	0.000000	N
+hsa-mir-6859-1	0	0.000000	N
+hsa-mir-6859-2	0	0.000000	N
+hsa-mir-6859-3	0	0.000000	N
+hsa-mir-6859-4	0	0.000000	N
+hsa-mir-6860	3	0.292795	N
+hsa-mir-6861	0	0.000000	N
+hsa-mir-6862-1	0	0.000000	N
+hsa-mir-6862-2	0	0.000000	N
+hsa-mir-6863	0	0.000000	N
+hsa-mir-6864	0	0.000000	N
+hsa-mir-6865	0	0.000000	N
+hsa-mir-6866	0	0.000000	N
+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	2	0.195196	N
+hsa-mir-6869	0	0.000000	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	0	0.000000	N
+hsa-mir-6872	0	0.000000	N
+hsa-mir-6873	0	0.000000	N
+hsa-mir-6874	2	0.195196	N
+hsa-mir-6875	1	0.097598	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	1	0.097598	N
+hsa-mir-6878	0	0.000000	N
+hsa-mir-6879	1	0.097598	N
+hsa-mir-6880	2	0.195196	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	0	0.000000	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	1	0.097598	N
+hsa-mir-6885	0	0.000000	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	0	0.000000	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	6	0.585589	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	0	0.000000	N
+hsa-mir-6895	0	0.000000	N
+hsa-mir-7-1	59	5.758294	N
+hsa-mir-7-2	1	0.097598	N
+hsa-mir-7-3	2	0.195196	N
+hsa-mir-708	1127	109.993178	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	1	0.097598	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	0	0.000000	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	0	0.000000	N
+hsa-mir-7113	0	0.000000	N
+hsa-mir-7114	0	0.000000	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	0	0.000000	N
+hsa-mir-7152	0	0.000000	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	0	0.000000	N
+hsa-mir-7156	0	0.000000	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	0	0.000000	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	132	12.882963	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	261	25.473132	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	5	0.487991	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	1	0.097598	N
+hsa-mir-766	27	2.635152	N
+hsa-mir-767	1	0.097598	N
+hsa-mir-769	160	15.615713	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	1	0.097598	N
+hsa-mir-7703	1	0.097598	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	5	0.487991	N
+hsa-mir-7706	2	0.195196	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	0	0.000000	N
+hsa-mir-7845	0	0.000000	N
+hsa-mir-7846	0	0.000000	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	0	0.000000	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	0	0.000000	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	0	0.000000	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	1	0.097598	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	0	0.000000	N
+hsa-mir-874	112	10.930999	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	0	0.000000	N
+hsa-mir-877	3	0.292795	N
+hsa-mir-885	6	0.585589	N
+hsa-mir-887	11	1.073580	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	189	18.446061	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	3	0.292795	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	0	0.000000	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	282	27.522694	N
+hsa-mir-9-2	273	26.644310	N
+hsa-mir-9-3	294	28.693872	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	29605	2889.394881	N
+hsa-mir-92a-2	27153	2650.084081	N
+hsa-mir-92b	1725	168.356905	N
+hsa-mir-93	24356	2377.101899	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	1	0.097598	N
+hsa-mir-935	6	0.585589	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	4	0.390393	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	3	0.292795	N
+hsa-mir-940	7	0.683187	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
+hsa-mir-941-5	0	0.000000	N
+hsa-mir-942	15	1.463973	N
+hsa-mir-943	0	0.000000	N
+hsa-mir-944	3	0.292795	N
+hsa-mir-95	6	0.585589	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	492	48.018317	N
+hsa-mir-98	284	27.717890	N
+hsa-mir-99a	10615	1036.004954	N
+hsa-mir-99b	173676	16950.465983	N

data/gdc_data_organized/1c3610f7-e0aa-48d7-9a27-0dbaf6e244f9/TCGA-A2-A04U-01A-21-A13A-20_RPPA_data.tsv

@@ -0,0 +1,488 @@
+AGID	lab_id	catalog_number	set_id	peptide_target	protein_expression
+AGID00100	882	sc-628	Old	1433BETA	0.095389
+AGID00111	913	sc-23957	Old	1433EPSILON	0.088479
+AGID00101	883	sc-1019	Old	1433ZETA	-0.0166436
+AGID00001	2	9452	Old	4EBP1	0.43877
+AGID00002	3	9456	Old	4EBP1_pS65	-0.229125
+AGID00003	6	9459	Old	4EBP1_pT37T46	-0.22779
+AGID00443	8	9455	Old	4EBP1_pT70	0.0779925
+AGID00120	985	4937	Old	53BP1	0.392645
+AGID00004	13	3661	Old	ACC_pS79	-0.19256
+AGID00005	14	1768-1/ab45174	Old	ACC1	-0.0933765
+AGID00408	2372	3658	Set163	AceCS1	0.55733959055802
+AGID00473	1182	5335	Old	ACETYLATUBULINLYS40	0.443845
+AGID00404	2367	9189	Set163	ACSL1	-0.0715899407359185
+AGID02144	2450	PA5-27081	Old	ACVRL1	0.087161
+AGID00186	1198	ab88574	Old	ADAR1	0.29087
+AGID00146	1084	4691	Old	AKT	-0.1240465
+AGID00028	230	9271	Old	AKT_pS473	-0.751995
+AGID00170	1154	2965	Old	AKT_pT308	-0.91342
+AGID00316	1800	3063	Set163	Akt2	-0.251694899381025
+AGID00347	2009	8599	Set163	Akt2_pS474	-0.32242046163595
+AGID02215	2577	ab195377	Set163	ALKBH5	0.909824888827865
+AGID00498	924	CA1030	Old	ALPHACATENIN	NA
+AGID00287	1630	ABC80	Set163	Ambra1_pS52	0.0991542563658772
+AGID00236	1351	ab129081	Set163	AMPK-a2_pS345	0.295445005796443
+AGID00006	39	2532	Old	AMPKALPHA	-0.305485
+AGID00007	40	2535	Old	AMPKALPHA_pT172	0.178445
+AGID00193	1208	610066	Old	ANNEXIN1	-0.49395
+AGID00166	1142	610668	Old	ANNEXINVII	0.1268095
+AGID00371	756	1852-1/ab52615	Old	AR	-0.452845
+AGID00194	1217	4432	Old	ARAF	0.486805
+AGID02191	2507	PA5-39728	Old	ARAF_pS299	0.237305
+AGID00260	1053	sc-32761	Old	ARID1A	0.25369
+AGID00264	1560	HPA029318	Old	ASNS	0.580185
+AGID00276	1612	3415	Set163	Atg3	-0.0904899643029217
+AGID00309	1775	13507	Set163	Atg4B	0.294829582032312
+AGID00310	1776	12994	Set163	Atg5	-0.569249992306067
+AGID00277	1613	8558	Set163	Atg7	0.25048009877347
+AGID00242	1363	2873	Old	ATM	-0.473695
+AGID02142	2447	13050	Set163	ATM_pS1981	-0.0796350449419276
+AGID00217	1289	ab14748	Set163	ATP5A	-0.154990544605644
+AGID02145	2451	PA5-43776	Set163	ATP5H	0.326835075145816
+AGID02150	2456	13934	Set163	ATR	0.0471870638306852
+AGID00315	1795	ab178407	Set163	ATR_pS428	0.153963846300206
+AGID00268	1569	ab97508	Set163	ATRX	-0.371522538996503
+AGID00391	2332	14475	Set163	Aurora-A	0.31211009877347
+AGID00392	2333	2914	Set163	Aurora-ABC_pT288_pT232_pT198	-0.0398298913145253
+AGID02195	2512	MA5-27890	Set163	Aurora-B	0.0225837927892754
+AGID00215	1271	8661	Old	AXL	0.27455
+AGID02143	2449	8457	Set163	b-Actin	0.0530598330208587
+AGID00179	1170	9565	Set163	b-Catenin_pT41_S45	-0.187104896157891
+AGID00301	1725	14058	Set163	B7-H3	0.171449184165964
+AGID00302	1726	14572	Set163	B7-H4	0.462024764061389
+AGID00008	63	9291	Old	BAD_pS112	0.0505055
+AGID00009	71	1542-1/ab32371	Old	BAK	0.104745
+AGID00192	1207	sc-28383	Old	BAP1C4	0.3802
+AGID00010	73	2772	Old	BAX	-0.35728
+AGID00433	80	M0887	Old	BCL2	0.2397
+AGID00219	1299	PAB8528	Old	BCL2A1	0.200015
+AGID00012	84	1018-1	Old	BCLXL	-0.22497
+AGID00377	87	sc-10086	Old	BECLIN	0.240495
+AGID00011	75	9562	Old	BETACATENIN	-0.83207
+AGID00013	88	1008-1/ab32060	Old	BID	0.0822905
+AGID00180	90	1036-1/ab32158	Old	BIM	-0.16154
+AGID00221	1311	610978	Set163	BiP-GRP78	0.226864542808855
+AGID00373	2194	07-507	Set163	BMK1-Erk5_pT218_Y220	0.485250132422969
+AGID00355	92	1647/ab33899	Old	BRAF	-0.580965
+AGID00014	94	2696	Old	BRAF_pS445	-0.0083415
+AGID00445	761	9012	Old	BRCA2	0.27833
+AGID00266	1567	13440	Old	BRD4	1.045445
+AGID00168	1146	2865	Set163	c-Abl_pY412	-0.0394506331898244
+AGID00278	1615	3130	Set163	c-IAP2	0.106824989992688
+AGID00345	1990	5649	Old	CA9	NA
+AGID00265	1565	2862	Old	CABL	0.0811275
+AGID00429	2407	2679	Set163	Calnexin	-0.280850154710438
+AGID00176	1165	9496	Set163	Caspase-8-cleaved	0.0963650169214546
+AGID00623	111	9665	Old	CASPASE3	0.317565
+AGID00015	109	9491	Old	CASPASE7CLEAVEDD198	-0.686875
+AGID00118	951	9746	Old	CASPASE8	0.01655
+AGID00537	935	551246	Old	CASPASE9	NA
+AGID00016	114	3238	Old	CAVEOLIN1	-0.834325
+AGID00358	2100	ab76000	Set163	CD134	-0.0865813387439823
+AGID00303	1737	826701	Set163	CD171	-0.188229923753812
+AGID00410	125	1632-1/ab78237	Old	CD20	-0.00287
+AGID00220	1308	ab28340	Old	CD26	0.0125385
+AGID00191	1206	610467	Set163	CD29	0.0815397465161039
+AGID00017	127	M0823	Old	CD31	0.21146
+AGID00369	2174	ab108403	Set163	CD38	0.107980109586566
+AGID00359	2104	ab133616	Set163	CD4	-0.606891158992392
+AGID00411	1398	3570	Set163	CD44	0.243304977412067
+AGID00237	1352	M070101-2	Set163	CD45	-0.302140066542125
+AGID00115	937	611016	Old	CD49B	-0.223825
+AGID02171	2482	91882	Set163	CD86	0.0286000880990037
+AGID00329	1873	4688	Set163	cdc25C	-0.0525748893997062
+AGID00227	1332	4651	Set163	Cdc42	-0.276530119567879
+AGID00422	2396	3387	Set163	Cdc6	0.281579983780357
+AGID00501	1007	9112	Old	CDK1	0.25255
+AGID00293	1658	ab32384	Set163	CDK1_pT14	1.49375010605152
+AGID00314	1783	4539	Old	CDK1_pY15	0.0241555
+AGID00423	2397	8064	Set163	CDT1	-0.0824553477085732
+AGID02101	2348	15102	Set163	cGAS	0.234740103348242
+AGID00447	2410	13460	Set163	CHD1L	-0.098711730718415
+AGID00189	1203	2360	Old	CHK1	0.0535795
+AGID00234	1348	ab79758	Old	CHK1_pS296	0.17911
+AGID00107	903	2348	Old	CHK1_pS345	-0.02945965
+AGID00018	146	3440	Old	CHK2	0.224475
+AGID00019	147	2197	Old	CHK2_pT68	0.311065
+AGID00527	2078	4952	Old	CIAP	-0.0822695
+AGID00350	2018	3793	Set163	CIITA	-0.0212098976914789
+AGID00434	155	9164	Old	CJUN_pS73	-0.024552
+AGID00020	157	1522-1/ab32363	Old	CKIT	0.1503355
+AGID00400	852	NB100-91714	Old	CLAUDIN7	-0.539085
+AGID00466	726	3127	Old	CMET	0.171285
+AGID00079	727	3129	Old	CMET_pY1235	0.183735
+AGID00167	161	9402	Old	CMYC	0.68556
+AGID00292	1656	11130-1-AP	Old	COG3	0.382475
+AGID00021	171	sc-20649	Old	COLLAGENVI	0.615145
+AGID00141	1069	459230	Old	COMPLEXIISUBUNIT30	NA
+AGID00267	1568	3512	Set163	Connexin-43	0.323019833020859
+AGID00269	1571	6434	Set163	Coup-TFII	-0.359669899978865
+AGID00150	1116	4850	Set163	Cox-IV	-0.349300554171072
+AGID00195	1218	4842	Set163	Cox2	0.112630106051516
+AGID00188	803	05-739	Old	CRAF	-0.14731
+AGID00022	179	9427	Old	CRAF_pS338	-0.08216
+AGID00023	181	9197	Set163	Creb	-0.205471018510175
+AGID00393	2334	9198	Set163	CREB_pS133	-0.584817763983127
+AGID00365	2155	4980	Set163	CSK	-0.215769935537315
+AGID00367	2160	9201	Set163	CtIP	0.0184047640613889
+AGID00536	2096	ab107198	Old	CTLA4	NA
+AGID00025	198	2936	Set163	Cyclin-D3	0.00165998378035659
+AGID00024	192	1495-1/ab32053	Old	CYCLINB1	0.93289
+AGID00382	194	sc-718	Old	CYCLIND1	0.0308135
+AGID00437	199	sc-25303	Old	CYCLINE1	0.425705
+AGID00449	202	1142-1	Old	CYCLINE2	-0.00411
+AGID00209	1257	ab110324	Set163	Cyclophilin-F	-0.117740185902056
+AGID00247	1379	ab48389	Set163	D-a-Tubulin	0.0894450938607895
+AGID00308	1770	GTX10524	Set163	DAPK1_pS308	0.0940800480350973
+AGID00304	1744	ab51601	Set163	DAPK2	0.0672748775988816
+AGID00343	1980	6998	Set163	DDB-1	-0.219049967560714
+AGID00427	2402	5583	Set163	DDR1	-0.129655669155486
+AGID00428	2403	SAB4504671	Set163	DDR1_pY513	0.326010078394943
+AGID00532	1273	Bast Lab	Old	DIRAS3	0.2588795
+AGID00104	891	ab76008	Old	DJ1	-0.20406
+AGID02146	2452	4658	Set163	DM-Histone-H3	-0.0813252861571157
+AGID00386	1397	ab32521	Set163	DM-K9-Histone-H3	0.103435068179687
+AGID00352	2030	14649	Set163	DNA-Ligase-IV	0.273314848313417
+AGID00407	2371	13609	Set163	DNA_POLG	-0.231609981285028
+AGID00399	2344	5032	Set163	DNMT1	1.87005996645168
+AGID00409	2373	5391	Set163	DRP1	0.124548530875124
+AGID00253	1406	5149	Old	DUSP4	0.1918
+AGID00334	1936	ab76310	Set163	DUSP6	0.44251976751846
+AGID00116	940	3218	Old	DVL3	0.27629
+AGID00211	1261	sc-251	Old	E2F1	NA
+AGID00148	1099	3195	Old	ECADHERIN	-0.657415
+AGID00135	1060	2332	Old	EEF2	-0.079935
+AGID00136	1061	3692	Old	EEF2K	-0.40035
+AGID00152	1120	2232	Old	EGFR	-0.300915
+AGID00450	217	2234	Old	EGFR_pY1068	0.126496
+AGID00026	221	1124-1/ab32578	Old	EGFR_pY1173	0.0277575
+AGID00078	722	9742	Old	EIF4E	0.184855
+AGID00328	1871	ab76256	Set163	eIF4E_pS209	0.00340978117345711
+AGID00154	1124	2498	Old	EIF4G	0.24874
+AGID00027	228	9181	Set163	Elk1_pS383	-0.0218748961578911
+AGID00235	1350	M061329-2	Set163	EMA	-2.7246203279972
+AGID00394	2337	3810	Set163	Enolase-1	0.08122486609264
+AGID00395	2338	8171	Set163	Enolase-2	0.316015109387286
+AGID00196	1219	GTX629542	Old	ENY2	-0.1388685
+AGID00438	1849	A302-024A	Set163	EphA2	0.337010102308521
+AGID00552	2422	6347	Set163	EphA2_pS897	0.0933401060515149
+AGID00553	2423	12677	Set163	EphA2_pY588	-0.136078394052985
+AGID00075	693	556347	Old	EPPK1	-2.0881
+AGID00335	238	RM-9101	Old	ERALPHA	-1.04864
+AGID00029	241	1091-1/ab32396	Old	ERALPHA_pS118	-0.1580835
+AGID00240	247	MS-671	Old	ERCC1	0.029001
+AGID00239	1355	11331-1-AP	Old	ERCC5	-0.310635
+AGID00484	249	sc-154	Old	ERK2	-0.0128
+AGID00372	2193	3552	Set163	Erk5	0.291960108685475
+AGID00405	2369	13826	Set163	ERRalpha	0.0515849774120672
+AGID00187	1200	A303-501A	Old	ETS1	-0.604355
+AGID00511	2492	2593	Set163	EVI1	-0.343835502418985
+AGID00485	1284	4905	Old	EZH2	NA
+AGID00030	252	1700-1/ab40794	Set163	FAK	-0.11845990254351
+AGID02151	2457	8556	Set163	FAK_pY397	-0.312686506338188
+AGID00171	1156	3180	Old	FASN	-0.359375
+AGID00356	2085	500-P18/10775-082	Set163	FGF-basic	0.526145100618975
+AGID00031	262	1574-1/ab45688	Old	FIBRONECTIN	1.21395
+AGID00339	1959	4403	Set163	FN14	0.169465106441411
+AGID02152	2458	20459	Old	FOXM1	0.41007
+AGID00378	269	9467	Old	FOXO3A	-0.082172
+AGID02197	2515	orb6051	Old	FOXO3A_pS318S321	0.1296525
+AGID02167	2475	PA5-64616	Set163	FRS2-alpha_pY196	-0.0900998894430277
+AGID02213	2575	ab124892	Set163	FTO	-0.422149894780261
+AGID02141	2446	12263	Old	G6PD	-0.318125
+AGID00117	943	3239	Old	GAB2	0.2706
+AGID00412	274	AM4300	Old	GAPDH	-0.14064
+AGID00086	764	558686	Old	GATA3	-0.230405
+AGID00383	1578	4253	Old	GATA6	0.3628
+AGID00289	1634	12601-1-AP	Set163	GCLC	-0.325214918511888
+AGID00305	1745	ab124827	Set163	GCLM	0.0638201011994851
+AGID00212	1263	3305	Old	GCN5L2	0.733755
+AGID00270	1579	3538	Set163	Gli1	0.188829702639895
+AGID00263	1520	ab69838	Set163	Gli3	-0.0356310436714048
+AGID00548	2530	3660	Set163	Glucocorticoid-Receptor	-0.822704901876355
+AGID00387	1617	12793	Set163	Glutamate-D1-2	-0.845041031056133
+AGID00262	1491	ab156876	Set163	Glutaminase	0.169570042004717
+AGID00319	1807	4275	Set163	Granzyme-B	-0.394194994203557
+AGID00368	2169	ab183737	Set163	GRB7	0.0266593256372475
+AGID00396	2339	3593	Set163	Grp75	0.269305037299981
+AGID00174	1163	9315	Set163	GSK-3B	-0.219310772235804
+AGID00502	1082	9336	Old	GSK3_pS9	-0.698435
+AGID00033	284	sc-7291	Old	GSK3ALPHABETA	-0.1143855
+AGID00034	285	9331	Old	GSK3ALPHABETA_pS21S9	-0.69189
+AGID00129	1035	3886	Old	GYS	NA
+AGID00130	1036	3891	Old	GYS_pS641	NA
+AGID01354	1342	9718	Set163	H2AX_pS139	0.0927500618980407
+AGID00363	1409	MA1-2022	Set163	H2AX_pS140	0.1051350404538
+AGID00131	1038	MS-325-P1	Old	HER2	-0.57989
+AGID00142	299	06-229	Old	HER2_pY1248	-0.1338175
+AGID00110	911	sc-285	Old	HER3	0.07919
+AGID00080	728	4791	Old	HER3_pY1289	0.10914
+AGID00103	890	2573	Old	HEREGULIN	0.120849
+AGID00271	1582	11988	Set163	HES1	-0.134280131004807
+AGID00397	2340	2024	Set163	Hexokinase-I	-0.214870142718993
+AGID00442	1023	2867	Set163	Hexokinase-II	0.955708545639149
+AGID00419	1402	610958	Old	HIF1ALPHA	NA
+AGID00205	1250	ab1791	Set163	Histone-H3	-0.347200071532784
+AGID00398	2341	3377	Set163	Histone-H3_pS10	-0.176185026920102
+AGID00332	1901	ab128959	Set163	HLA-DQA1	-0.366421268736163
+AGID00333	1902	14832-1-AP	Set163	HMHA1	-0.693170392598508
+AGID00035	321	2402	Set163	HSP27	-0.0272449534465045
+AGID00036	323	2401	Set163	HSP27_pS82	-0.735819905385413
+AGID00320	1808	12165	Set163	HSP60	-0.0447851167519694
+AGID00037	325	4872	Old	HSP70	-0.1295065
+AGID00366	2158	86630	Set163	IDO	-0.644185388430961
+AGID00197	1221	3024	Old	IGF1R_pY1135Y1136	0.261805
+AGID00038	335	3922	Old	IGFBP2	-0.0927225
+AGID00090	793	611504	Set163	IGFBP3	-0.106210218826542
+AGID00039	336	3027	Set163	IGFRb	-0.101839891869043
+AGID00336	1949	12153	Set163	IL-6	-0.0922852222142992
+AGID02221	2583	57145	Set163	IMP3	0.125049961946222
+AGID02153	2459	14543	Old	INPP4B	0.20492
+AGID00272	1586	3025	Set163	IR-b	0.353740066958015
+AGID00519	2519	4302	Set163	IRF-3	-0.562754646784157
+AGID00520	2520	4947	Set163	IRF-3_pS396	0.0852995647729509
+AGID00223	1316	sc-497	Old	IRF1	-0.0672405
+AGID00092	802	06-248	Old	IRS1	0.055208
+AGID00040	371	4502	Set163	IRS2	0.335349640256661
+AGID00250	1394	sc-13157	Old	JAB1	0.04085415
+AGID00256	1413	ab109536	Set163	Jagged1	-0.0820243684861582
+AGID00177	1166	3230	Old	JAK2	0.016886
+AGID00758	377	4671	Old	JNK_pT183Y185	-0.13451
+AGID02136	2439	PA5-28262	Old	JNK2	-0.35846
+AGID00307	1757	ab10484	Set163	KAP1	0.0531845947948813
+AGID00528	904	2180	Old	KU80	0.01186
+AGID00375	2237	HPA028732	Set163	LAD1	0.761065110080434
+AGID00290	1643	IHC-00439	Set163	Lasu1	0.255045081488113
+AGID00279	1618	4108	Set163	LC3A-B	-0.216495163885972
+AGID00042	397	2752	Old	LCK	-0.444255
+AGID00119	976	3582	Old	LDHA	NA
+AGID00533	977	ab85319	Old	LDHB	NA
+AGID00529	1477	3050	Old	LKB1	0.1948385
+AGID00244	1367	2568	Set163	LRP6_pS1490	-0.124704916536418
+AGID00439	2424	2796	Set163	Lyn	-0.0257849534465046
+AGID02154	2460	4370	Old	MAPK_pT202Y204	0.1787504
+AGID00198	1222	5453	Set163	Mcl-1	-0.395890944690038
+AGID00288	1633	AB3314P	Set163	MCT4	-0.10157002911218
+AGID00175	1164	3521	Set163	MDM2_pS166	0.162275107169215
+AGID00044	417	1235-1/ab32576	Old	MEK1	0.17693
+AGID00143	1076	9154	Old	MEK1_pS217S221	-0.0289145
+AGID00201	1243	9125	Set163	MEK2	0.0837996321468411
+AGID00361	2118	ab51061	Set163	MelanA	0.257485083463582
+AGID00362	2119	ab137078	Set163	Melanoma-gp100	-0.0530299961183762
+AGID00337	1951	12711	Set163	MERIT40	0.292084469612534
+AGID00338	1952	12110	Set163	MERIT40_pS29	-0.283749890829322
+AGID02212	2574	ab195352	Set163	METTL3	0.515510101199485
+AGID00225	1323	sc-20121	Set163	MIF	0.513870106813978
+AGID00137	1062	WH0054206M1	Old	MIG6	0.38574
+AGID00403	2117	ab20663	Set163	MITF	-0.140035283091777
+AGID00503	1067	ab3298	Old	MITOCHONDRIA	NA
+AGID00321	1809	14739	Set163	Mitofusin-1	0.46405131354337
+AGID00322	1810	11925	Set163	Mitofusin-2	0.0333299795521591
+AGID00389	2324	3515	Set163	MLH1	-0.226270038053778
+AGID00312	1780	14993	Set163	MLKL	-0.289600047272635
+AGID00402	2359	MAB3328	Set163	MMP14	0.448610045054565
+AGID00045	435	4022	Set163	MMP2	-0.0772627540104848
+AGID00122	1005	2195	Set163	Mnk1	-0.169841107787484
+AGID00331	1899	sc-377312	Set163	MR1	-0.103465079148739
+AGID00273	1589	ab103319	Set163	MRAP	0.270670110418343
+AGID00530	440	4847	Old	MRE11	0.191995
+AGID00390	905	2850	Old	MSH2	1.006155
+AGID00138	1063	22030002	Old	MSH6	1.4497
+AGID00299	1675	ab76148	Set163	MSI2	-0.158544889503678
+AGID00232	1344	ab14705	Set163	MTCO1	-0.626401574413853
+AGID00046	444	2983	Old	MTOR	-0.11055585
+AGID00047	446	2971	Old	MTOR_pS2448	-0.1251015
+AGID00204	1247	H00009788-M01A	Set163	MTSS1	0.0802149309712097
+AGID00401	1139	21370002	Old	MYH11	0.00465500000000001
+AGID00291	1647	3403	Old	MYOSINIIA	0.29685
+AGID00173	1160	5026	Old	MYOSINIIA_pS1943	0.38769
+AGID00318	1803	4282	Set163	Myt1	0.281089851319943
+AGID00216	1274	5795-1/ab129189	Old	NAPSINA	NA
+AGID00418	452	4061	Old	NCADHERIN	-0.0943865
+AGID00156	1126	3217	Old	NDRG1_pT346	-0.16644
+AGID02133	2436	PA5-45913	Set163	NDUFB4	-0.0697498918690426
+AGID00134	1046	22710002	Old	NF2	-0.189145
+AGID00048	457	3033	Old	NFKBP65_pS536	-0.084165
+AGID02155	2461	3608	Old	NOTCH1	0.19267
+AGID00340	1969	4147	Set163	Notch1-cleaved	-0.0160251397644532
+AGID00087	767	sc-5593	Set163	Notch3	0.0881900824845118
+AGID00258	1420	3187	Set163	NQO1	-0.511215079148738
+AGID00162	1136	sc-31	Old	NRAS	0.13653
+AGID00257	1419	12721	Old	NRF2	NA
+AGID00297	1669	2750	Set163	Oct-4	-0.191044903227992
+AGID00420	466	1712-1/ab40803	Old	P16INK4A	2.19155
+AGID00384	470	sc-6246	Old	P21	0.24126
+AGID00105	897	1591-1/ab32034	Old	P27	0.364095
+AGID00096	842	AF1555	Old	P27_pT157	0.165525
+AGID00099	878	ab64949	Old	P27_pT198	0.242615
+AGID00181	1175	9228	Set163	p38-a	-0.390251006033533
+AGID00098	479	9211	Old	P38_pT180Y182	-0.514115
+AGID00049	478	9212	Old	P38MAPK	-0.0195165
+AGID00151	1119	4695	Set163	p44-42-MAPK	-0.403314904648944
+AGID00050	481	9282	Old	P53	0.0624195
+AGID00490	1187	610833	Old	P62LCKLIGAND	-0.44642
+AGID00545	1415	ab53039	Old	P63	NA
+AGID00052	494	9205	Old	P70S6K_pT389	-0.0586495
+AGID00051	493	1494-1/ab32529	Old	P70S6K1	-0.176345
+AGID00085	759	9347	Old	P90RSK	-0.28386
+AGID00531	770	9344	Old	P90RSK_pT359S363	-0.0403115
+AGID00182	1178	9346	Set163	p90RSK_pT573	0.0278699837803567
+AGID00053	499	612024	Old	PAI1	0.67887
+AGID00224	1322	HPA035895	Set163	PAICS	0.0216501086854749
+AGID00323	1811	2602	Set163	PAK1	0.195119679766042
+AGID02199	2517	PA5-69540	Set163	PAK4	-0.181775005952401
+AGID00245	1370	4336-BPC-100	Set163	PAR	3.52980964829717
+AGID00374	2209	66564	Set163	PARG	0.195659833020859
+AGID00370	1372	sc-7150	Old	PARP1	2.0414
+AGID00468	501	9546	Old	PARPCLEAVED	0.737135
+AGID00274	1591	ab53715	Set163	Patched	0.159030071740731
+AGID00513	2486	60433	Set163	PAX6	0.393080003881624
+AGID00441	1621	9857	Set163	PAX8	-0.254856275658966
+AGID00054	504	2542	Old	PAXILLIN	-0.0029915
+AGID00055	509	2130	Old	PCADHERIN	0.0594055
+AGID00248	511	ab29	Old	PCNA	0.145024
+AGID00413	2095	43248	Old	PDCD1	NA
+AGID00094	816	600-401-965	Old	PDCD4	-0.02503
+AGID00385	1225	3169	Set163	PDGFRB	0.525155096772008
+AGID00210	1258	ab110332	Set163	PDH	0.0016239499949662
+AGID00324	1817	3205	Set163	PDHA1	0.213684431350821
+AGID00280	1622	3820	Set163	PDHK1	0.135120100021135
+AGID00056	515	3062	Old	PDK1	-0.176985
+AGID00057	516	3061	Old	PDK1_pS241	-0.38531
+AGID00300	1234	sc-19090	Old	PDL1	0.16228
+AGID00124	1017	2780	Old	PEA15	-0.27757
+AGID00125	1018	44-836G	Old	PEA15_pS116	-0.31426
+AGID00440	2429	3192	Set163	PERK	0.339229492962923
+AGID02207	2569	ab192876	Set163	PGM1	0.313599455394357
+AGID00281	1623	13428	Set163	PHGDH	1.23307948367475
+AGID00425	2399	22789-1-AP	Set163	PHLPP	-0.0299798924928753
+AGID00226	1330	sc-376412	Set163	PI3K-p110-b	-0.124769903929804
+AGID00093	808	4255	Old	PI3KP110ALPHA	0.0845155
+AGID00058	523	06-195	Old	PI3KP85	-0.30499
+AGID00296	1667	5675	Set163	PKA-a	0.597114964207614
+AGID00259	1426	9375	Set163	PKC-a-b-II_pT638_T641	-0.110619896651759
+AGID00172	529	05-154	Old	PKCALPHA	-0.6171
+AGID00460	530	06-822	Old	PKCALPHA_pS657	-0.512125
+AGID00114	932	07-875	Old	PKCDELTA_pS664	-0.0779015
+AGID00163	1137	9371	Old	PKCPANBETAII_pS660	-0.886995
+AGID00126	1025	4053	Old	PKM2	NA
+AGID00512	2489	5690	Set163	PLC-gamma1	0.0699792731116056
+AGID02138	2441	GTX133463	Set163	PLC-gamma2_pY759	-0.212465059186101
+AGID00084	754	4513	Set163	PLK1	0.545990038885555
+AGID00203	1246	22510002	Set163	PMS2	-0.457389896651758
+AGID00207	1254	ab14734	Set163	Porin	0.226440109586566
+AGID00381	549	1483-1/ab32085	Old	PR	-0.0576165
+AGID00081	738	AHO1031	Set163	PRAS40	-0.0626698895816573
+AGID00082	739	44-1100G	Old	PRAS40_pT246	0.0074925
+AGID00424	2398	OAAF05458	Set163	PRC1_pT481	-0.0236499155746763
+AGID00492	1205	HPA007730	Old	PRDX1	-0.108624
+AGID00190	1204	ab102739	Old	PREX1	-0.31208
+AGID00061	566	9552	Old	PTEN	0.694235
+AGID00364	2154	ab76942	Set163	PTPN12	-0.0933900519860357
+AGID00218	1290	4976	Set163	Puma	-0.306004889365049
+AGID00200	1242	SAB2900066	Old	PYGB	NA
+AGID00535	1494	ab61013	Old	PYGL	NA
+AGID00202	1245	H00005837-M10	Old	PYGM	NA
+AGID00275	1607	3291	Set163	Pyk2_pY402	-0.213745475074337
+AGID00145	1083	3539	Old	RAB11	-0.00635375
+AGID00169	1150	4314	Old	RAB25	0.1460835
+AGID00342	1979	24555	Set163	Rad23A	-0.265964976008445
+AGID00261	987	05-525	Old	RAD50	-0.55975
+AGID00360	579	NA71	Old	RAD51	-0.016079
+AGID00158	1128	2280	Old	RAPTOR	0.274225
+AGID00059	552	9309	Old	RB	-0.0410715
+AGID00060	557	9308	Old	RB_pS807S811	-0.976995
+AGID00164	1138	21390002	Old	RBM15	0.894325
+AGID00547	735	3221	Old	RET_pY905	NA
+AGID00097	847	MAB3426	Set163	Rheb	0.130910015110608
+AGID00159	1129	2114	Old	RICTOR	-0.21642
+AGID00160	1130	3806	Old	RICTOR_pT1135	0.01423055
+AGID00282	1624	4926	Set163	RIP	-0.192574934280986
+AGID00283	1625	13526	Set163	RIP3	0.022969356620915
+AGID00416	1368	2208	Set163	RPA32	-0.00393492055667151
+AGID00246	1375	A300-245A	Set163	RPA32_pS4_S8	0.155639006373795
+AGID00341	1978	3388	Set163	RRM1	0.115314888827865
+AGID00344	1981	PA5-27856	Set163	RRM2	0.0509534484339935
+AGID00554	2425	8408	Set163	RSK1	-0.268017744055172
+AGID00353	2031	13018	Set163	S100A4	-0.166934900594033
+AGID00330	1874	2317	Old	S6	0.22137
+AGID00062	600	2211	Old	S6_pS235S236	-0.0296515
+AGID00063	601	2215	Old	S6_pS240S244	-0.58277
+AGID00157	1127	sc-58420	Old	SCD1	0.23462
+AGID00230	1339	11998	Set163	SDHA	-0.339599897691479
+AGID00294	1039	ab69836	Old	SETD2	0.1226975
+AGID00161	1131	32-4500	Old	SF2	0.1802184
+AGID02179	2495	3534	Set163	SFRP1	0.736154073375102
+AGID00431	2411	12103	Set163	SGK1	-0.127840633189825
+AGID00430	2409	8156	Set163	SGK3	-0.112704936810973
+AGID02168	2476	bs-3413R	Old	SHC_pY317	-0.0195604
+AGID00376	2241	3397	Set163	SHP2	0.568229851319942
+AGID00183	1180	3751	Old	SHP2_pY542	-0.038795
+AGID02208	2570	ab8120	Set163	SIRP-alpha	-0.528485558979779
+AGID00222	1133	sc-99002	Old	SLC1A5	-0.032523
+AGID00255	1411	sc-136891	Set163	Slfn11	0.205240015110607
+AGID00064	610	2954	Old	SMAC	-0.249055
+AGID00113	922	1649-1/ab33902	Old	SMAD1	-0.053406
+AGID00091	796	1735-1/ab40854	Old	SMAD3	-0.017895
+AGID02160	2467	46535	Old	SMAD4	-0.00244999999999999
+AGID00065	616	3895	Old	SNAIL	0.28433
+AGID00325	1818	4266	Set163	SOD1	0.203308618419551
+AGID00380	1328	13141	Set163	SOD2	-0.427315122401118
+AGID00298	1670	2748	Set163	Sox2	0.0232298970676513
+AGID00066	621	05-184	Old	SRC	0.1440045
+AGID02157	2463	6943	Old	SRC_pY416	-0.1579795
+AGID00068	626	2105	Old	SRC_pY527	-0.295185
+AGID00185	1197	4904	Set163	Stat3	1.34118693927232
+AGID00388	637	9131	Old	STAT3_pY705	0.0936365
+AGID00069	638	1289-1/ab32043	Old	STAT5ALPHA	0.466865
+AGID00077	718	1972-1/ab52630	Old	STATHMIN	0.34471
+AGID00357	2099	13647	Set163	STING	0.110855109768517
+AGID00128	1033	sc-1240	Old	SYK	-0.51848
+AGID00070	646	05-348	Set163	Tau	-0.0543149185118876
+AGID00327	777	2149	Old	TAZ	0.551115
+AGID00228	1333	7495	Set163	TFAM	0.728453779238257
+AGID00165	1140	22500002	Old	TFRC	-1.25935
+AGID00149	1107	S1711/ab137573	Old	TIGAR	-0.19823
+AGID00109	908	MS-224-P1	Old	TRANSGLUTAMINASE	-0.564695
+AGID00406	2370	612344	Set163	TRAP1	0.721900103348242
+AGID00559	2537	PA5-34561	Set163	TRIM24	0.243252857041354
+AGID00306	1756	ab167154	Set163	TRIM25	-0.0409456080199261
+AGID00426	2400	PA5-52193	Set163	TRIP13	0.0612051100804338
+AGID00155	1125	4906	Old	TSC1	0.0770275
+AGID00144	1081	2044-1/ab76013	Old	TTF1	NA
+AGID00071	670	1613-1/ab32554	Old	TUBERIN	0.063605
+AGID02194	2511	ab109403	Old	TUBERIN_pT1462	-0.193105
+AGID00417	1842	ab173300	Set163	TUFM	0.102310078394943
+AGID00238	1353	sc-81417	Set163	Twist	0.0779601043186478
+AGID00436	1080	5585	Set163	Tyro3	-0.295520435227049
+AGID00295	1662	5546	Set163	U-Histone-H2B	-0.91799506902879
+AGID00214	1270	HPA005651	Set163	UBAC1	-0.352825031321587
+AGID00351	2020	sc-136145	Set163	UBQLN4	-0.182239906910337
+AGID00213	1267	sc-271268	Set163	UGT1A	0.0753951064414106
+AGID00284	1626	6888	Set163	ULK1_pS757	-0.41569780404698
+AGID00208	1256	MS304/ab14745	Set163	UQCRC2	-0.128839919525615
+AGID00313	1781	13115	Set163	UVRAG	0.248670100021136
+AGID00073	678	3112	Set163	VASP	0.395219739376689
+AGID00184	1181	2502	Set163	VAV1	-0.412825787718265
+AGID00074	688	2479	Old	VEGFR2	0.60342
+AGID00421	2394	68547	Set163	VHL	0.637370104318648
+AGID00231	1343	SAB4200080	Set163	Vinculin	0.409359687459974
+AGID00317	1802	4936	Set163	Wee1	0.0161938987021029
+AGID00354	2058	4910	Set163	Wee1_pS642	-0.293610142718992
+AGID00285	1627	12124	Set163	WIPI1	0.238610084425324
+AGID00286	1628	8567	Set163	WIPI2	0.294315110634951
+AGID02214	2576	ab195380	Set163	WTAP	-0.00648060303793216
+AGID00133	1044	sc-32136	Old	XBP1	0.171226
+AGID00076	699	2042	Set163	XIAP	-0.372620426562711
+AGID00241	1359	sc-56813	Set163	XPA	-0.631164890612713
+AGID00349	1354	ab3299	Set163	XPF	-0.128282519865664
+AGID02137	2440	PA5-29359	Old	XRCC1	0.2138
+AGID00088	780	sc-15407	Old	YAP	-0.066169
+AGID00089	782	4911	Old	YAP_pS127	-0.24864
+AGID00504	700	17250002	Old	YB1	0.25826
+AGID00095	835	2900	Old	YB1_pS102	-0.19286
+AGID02217	2579	ab220163	Set163	YTHDF2	0.334595079443329
+AGID02210	2572	ab220161	Set163	YTHDF3	0.495150059264081
+AGID00326	1828	2705	Set163	ZAP-70	-1.0170070554489
+AGID00432	2244	sc-25388	Set163	ZEB1	-0.0601216205774186

data/gdc_data_organized/1c3610f7-e0aa-48d7-9a27-0dbaf6e244f9/TCGA-A2-A04U-01Z-00-DX1.06D17357-46A8-4DC3-A22B-2F4EB6EE3F79.svs

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+size 1160011563

data/gdc_data_organized/298d33da-15af-48cb-b30f-eaf54e7baa43/7132cfb8-66e0-4fa1-b80c-7c0aa79b89c1_wgs_gdc_realn.cr.igv.reheader.seg.txt

@@ -0,0 +1,1336 @@
+GDC_Aliquot_ID	Chromosome	Start	End	Num_Probes	Segment_Mean
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	17001	270000	9	0.311636
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	629001	1689000	872	-0.263678
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	1689001	1742000	28	-1.238091
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	1742001	12911000	10978	-0.280161
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	13006001	13301000	50	-0.712651
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	13310001	16535000	3197	-0.285116
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	16535001	16627000	60	-0.149971
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	16627001	16647000	20	-0.245218
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	16647001	16949000	162	0.275014
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	16949001	51797000	34574	-0.283267
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	51797001	51962000	165	0.277117
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	51962001	52238000	276	0.029352
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	52238001	108670000	55652	-0.296101
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	108670001	109668000	993	0.446535
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	109668001	110778000	1085	0.412577
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	110778001	115259000	4439	-0.294152
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	115259001	116291000	1027	0.443189
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	116291001	117545000	1250	0.465628
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	117545001	118924000	1371	0.490635
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	118924001	119635000	711	0.520387
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	119635001	119649000	14	0.563601
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	119649001	123056000	790	0.552824
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	123058001	123721000	81	-0.152036
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	123742001	124006000	30	-2.928314
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	124012001	124452000	64	-1.724597
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	124454001	124553000	19	-0.950266
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	124555001	124926000	69	0.091464
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	124940001	143910000	559	0.500069
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	143914001	152902000	5131	0.396501
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	152902001	152914000	12	0.400444
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	152914001	153338000	421	0.390363
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	153338001	156038000	2670	0.399955
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	156038001	156972000	931	0.409377
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	156972001	158931000	1951	0.373569
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	158931001	160084000	1143	0.383687
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	160084001	161542000	1427	0.391046
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	161542001	161686000	86	0.620169
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	161686001	169111000	7395	0.387829
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	169111001	177047000	7855	0.393446
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	177047001	177072000	25	0.429124
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	177072001	177518000	444	0.383406
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	177518001	180053000	2523	0.399952
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	180053001	186281000	6196	0.393049
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	186281001	186715000	432	0.422221
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	186715001	187448000	726	0.541771
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	187448001	187553000	104	0.424700
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	187553001	189056000	1485	0.355191
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	189056001	189065000	9	-1.287791
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	189065001	190895000	1824	0.359055
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	190895001	195417000	4498	0.360118
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	195417001	195957000	536	0.353876
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	195957001	196027000	70	0.365144
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	196027001	196704000	671	0.351273
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	196704001	199481000	2674	0.372442
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	199481001	199640000	156	0.471048
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	199640001	200993000	1348	0.532640
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	200993001	201556000	562	0.557355
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	201556001	201569000	13	0.559755
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	201569001	201781000	212	0.552829
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	201781001	202237000	455	0.552815
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	202237001	202328000	91	0.558259
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	202328001	203203000	874	0.545038
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	203203001	204435000	1232	0.546530
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	204435001	204632000	196	0.537699
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	204632001	207350000	2486	0.549847
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	207350001	207580000	185	0.550769
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	207580001	207889000	305	0.540075
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	207889001	223160000	15174	0.537027
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	223160001	229849000	6446	0.545233
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	229849001	230091000	242	0.543239
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	230091001	241391000	11236	0.528002
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	241391001	243917000	2483	0.522606
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	243917001	246194000	2261	0.534538
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	246194001	248435000	2189	0.529412
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	248436001	248483000	32	0.886688
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	248485001	248650000	81	-0.091929
+TCGA-A2-A0YH-01A-11D-A744-36	chr1	248659001	248931000	268	0.520632
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	11001	2436000	2358	-0.653340
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	2436001	2456000	20	-0.673118
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	2456001	5686000	3197	-0.649333
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	5686001	6109000	423	-0.645232
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	6109001	6156000	47	-0.641009
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	6156001	6293000	135	-0.661273
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	6293001	8339000	2041	-0.644283
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	8339001	16549000	8165	-0.642758
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	16549001	21951000	5378	-0.644558
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	21951001	22206000	254	-0.663671
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	22206001	22847000	641	-0.658030
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	22847001	22944000	97	-0.634476
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	22944001	23304000	353	-0.647535
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	23304001	23481000	177	-0.653366
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	23481001	25885000	2399	-0.644377
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	25885001	25911000	26	-0.641627
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	25911001	25952000	41	0.620560
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	25952001	33222000	7234	0.110412
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	33222001	87519000	53442	-0.248039
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	87521001	87673000	24	-1.096666
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	87679001	90380000	1682	-0.289807
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	90380001	90403000	23	-1.036310
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	91407001	92198000	418	-0.264100
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	92217001	94152000	29	-0.902381
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	94153001	97195000	2585	-0.266476
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	97195001	97213000	18	-0.275642
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	97213001	111291000	12747	-0.282305
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	111298001	111419000	30	0.315690
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	111420001	113422000	1720	-0.276384
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	113422001	113508000	42	-0.378408
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	113508001	131436000	17302	-0.286552
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	131436001	131457000	21	-0.361469
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	131457001	227378000	95237	-0.282946
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	227378001	227394000	16	0.249622
+TCGA-A2-A0YH-01A-11D-A744-36	chr2	227394001	242159000	14574	-0.274250
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	12001	4112000	4057	0.028062
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	4112001	16225000	12067	0.042508
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	16225001	17847000	1614	0.030912
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	17847001	48154000	30153	0.035206
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	48154001	48339000	182	0.043633
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	48339001	48485000	146	0.067229
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	48485001	54599000	6083	0.047959
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	54599001	56116000	1510	0.029622
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	56116001	63432000	7278	0.036390
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	63432001	64131000	694	0.033641
+TCGA-A2-A0YH-01A-11D-A744-36	chr3	64131001	89345000	25085	0.027431
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+TCGA-A2-A0YH-01A-11D-A744-36	chr21	13129001	13320000	140	-0.171992
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	13320001	13435000	107	-0.076366
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	13435001	13872000	211	-0.075612
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	13872001	13901000	28	0.438253
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	13901001	14941000	1028	-0.098681
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	14941001	15241000	296	-0.082676
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	15241001	15255000	14	-0.119503
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	15255001	17329000	2065	-0.096391
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	17329001	17433000	97	-0.108630
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	17433001	18486000	1048	-0.102200
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	18486001	26723000	8210	-0.105824
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	26723001	29382000	2655	-0.094821
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	29382001	29449000	65	-0.109067
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	29449001	31846000	2394	-0.106993
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	31846001	31861000	15	-0.087439
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	31861001	32303000	440	-0.098780
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	32303001	36782000	4342	-0.093003
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	36782001	36985000	203	-0.080600
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	36985001	38174000	1188	-0.096326
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	38174001	38191000	17	-0.099490
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	38191001	38681000	490	-0.101333
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	38681001	39159000	476	-0.090908
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	39159001	43716000	4135	-0.086397
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	43716001	43771000	55	-0.064447
+TCGA-A2-A0YH-01A-11D-A744-36	chr21	43771001	46682000	2732	-0.081985
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	10661001	10785000	96	-0.278120
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	10924001	12694000	544	0.112387
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	12694001	19284000	2425	0.302587
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	19284001	19596000	311	0.422104
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	19596001	19828000	232	0.550631
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	19828001	20969000	1104	0.544460
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	20969001	21016000	47	0.551660
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	21016001	21633000	194	0.519234
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	21633001	21647000	14	0.557937
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	21647001	22131000	479	0.528585
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	22131001	23027000	878	0.297617
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	23027001	23051000	24	0.439774
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	23051001	25089000	1966	0.536683
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	25089001	42123000	16962	-0.232814
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	42126001	42144000	15	0.318800
+TCGA-A2-A0YH-01A-11D-A744-36	chr22	42144001	50796000	8566	-0.226571
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	251001	297000	36	-0.281600
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	299001	364000	58	-0.228477
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	367001	564000	185	-0.270116
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	564001	568000	4	-0.288778
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	568001	593000	23	-0.306312
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	593001	602000	8	-0.299700
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	602001	690000	85	-0.291100
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	690001	708000	18	-0.317546
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	708001	754000	45	-0.297067
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	754001	940000	179	-0.272364
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	940001	941000	1	-0.272804
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	941001	966000	24	-0.267507
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	966001	998000	32	-0.287313
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	998001	1096000	95	-0.280963
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1096001	1105000	9	-0.325532
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1105001	1152000	42	-0.277507
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1152001	1157000	5	-0.254963
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1157001	1303000	133	-0.275714
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1303001	1309000	6	-0.282233
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1309001	1404000	83	-0.284079
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1404001	1411000	5	-0.325276
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1411001	1428000	17	-0.289790
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1428001	1467000	39	-0.262926
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1467001	1527000	59	-0.274663
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1527001	1537000	10	-0.203650
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1537001	1657000	114	-0.265882
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1657001	1658000	1	-0.361506
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1658001	1945000	277	-0.291368
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	1945001	2250000	113	-0.275750
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2250001	2251000	1	-0.267703
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2251001	2285000	28	-0.311195
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2285001	2290000	5	-0.221125
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2290001	2328000	37	-0.239460
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2328001	2329000	1	-0.406636
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2329001	2445000	115	-0.285639
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2445001	2452000	7	-0.325960
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+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2476001	2477000	1	-0.132296
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2477001	2629000	152	-0.291407
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2629001	2637000	8	-0.292836
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2637001	2780000	142	-0.289403
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	2780001	9412000	11	0.289794
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	9674001	89208000	34	0.722363
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	105007001	141052000	22	0.805768
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	141514001	156004000	308	-0.006906
+TCGA-A2-A0YH-01A-11D-A744-36	chrX	156004001	156026000	6	0.149355
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	6534001	10124000	7	-0.754571
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	10142001	10658000	5	-2.322009
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	10660001	10678000	10	-5.565830
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	10678001	10922000	20	-2.131751
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	10926001	11319000	49	-0.427993
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	11319001	11321000	2	-2.314843
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	11324001	11410000	32	-0.358417
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	11414001	11556000	5	-8.684297
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	11643001	26442000	16	-1.277784
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	26638001	56708000	6	-13.164412
+TCGA-A2-A0YH-01A-11D-A744-36	chrY	56821001	56887000	66	-0.232580
+TCGA-A2-A0YH-01A-11D-A744-36	chrM	1	16569	17	-0.070853

data/gdc_data_organized/298d33da-15af-48cb-b30f-eaf54e7baa43/d250ca1d-c933-4724-92f1-88ed7e926b95.mirbase21.mirnas.quantification.txt

@@ -0,0 +1,1882 @@
+miRNA_ID	read_count	reads_per_million_miRNA_mapped	cross-mapped
+hsa-let-7a-1	4855	4295.357829	N
+hsa-let-7a-2	4917	4350.211008	N
+hsa-let-7a-3	4966	4393.562714	N
+hsa-let-7b	12537	11091.843686	N
+hsa-let-7c	2607	2306.487716	N
+hsa-let-7d	598	529.067761	N
+hsa-let-7e	1553	1373.983668	N
+hsa-let-7f-1	1817	1607.552044	N
+hsa-let-7f-2	1810	1601.358943	N
+hsa-let-7g	714	631.696290	N
+hsa-let-7i	1034	914.809474	N
+hsa-mir-1-1	1	0.884729	N
+hsa-mir-1-2	2	1.769457	N
+hsa-mir-100	5289	4679.330083	Y
+hsa-mir-101-1	3823	3382.317812	N
+hsa-mir-101-2	3880	3432.747348	N
+hsa-mir-103a-1	26582	23517.858249	Y
+hsa-mir-103a-2	26367	23327.641579	Y
+hsa-mir-103b-1	0	0.000000	N
+hsa-mir-103b-2	0	0.000000	N
+hsa-mir-105-1	2	1.769457	N
+hsa-mir-105-2	1	0.884729	N
+hsa-mir-106a	24	21.233489	Y
+hsa-mir-106b	492	435.286519	N
+hsa-mir-107	72	63.700466	Y
+hsa-mir-10a	19084	16884.162472	N
+hsa-mir-10b	83295	73693.476895	N
+hsa-mir-1178	0	0.000000	N
+hsa-mir-1179	0	0.000000	N
+hsa-mir-1180	31	27.426590	N
+hsa-mir-1181	0	0.000000	N
+hsa-mir-1182	0	0.000000	N
+hsa-mir-1183	0	0.000000	N
+hsa-mir-1184-1	0	0.000000	N
+hsa-mir-1184-2	0	0.000000	N
+hsa-mir-1184-3	0	0.000000	N
+hsa-mir-1185-1	0	0.000000	N
+hsa-mir-1185-2	1	0.884729	N
+hsa-mir-1193	0	0.000000	N
+hsa-mir-1197	0	0.000000	N
+hsa-mir-1199	0	0.000000	N
+hsa-mir-1200	0	0.000000	N
+hsa-mir-1202	0	0.000000	N
+hsa-mir-1203	0	0.000000	N
+hsa-mir-1204	0	0.000000	N
+hsa-mir-1205	0	0.000000	N
+hsa-mir-1206	0	0.000000	N
+hsa-mir-1207	0	0.000000	N
+hsa-mir-1208	0	0.000000	N
+hsa-mir-122	0	0.000000	N
+hsa-mir-1224	2	1.769457	N
+hsa-mir-1225	0	0.000000	N
+hsa-mir-1226	1	0.884729	N
+hsa-mir-1227	0	0.000000	N
+hsa-mir-1228	0	0.000000	N
+hsa-mir-1229	0	0.000000	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
+hsa-mir-1237	1	0.884729	N
+hsa-mir-1238	0	0.000000	N
+hsa-mir-124-1	0	0.000000	N
+hsa-mir-124-2	0	0.000000	N
+hsa-mir-124-3	0	0.000000	N
+hsa-mir-1243	0	0.000000	N
+hsa-mir-1244-1	0	0.000000	N
+hsa-mir-1244-2	0	0.000000	N
+hsa-mir-1244-3	0	0.000000	N
+hsa-mir-1244-4	0	0.000000	N
+hsa-mir-1245a	4	3.538915	N
+hsa-mir-1245b	0	0.000000	N
+hsa-mir-1246	0	0.000000	N
+hsa-mir-1247	23	20.348760	N
+hsa-mir-1248	6	5.308372	N
+hsa-mir-1249	4	3.538915	N
+hsa-mir-1250	0	0.000000	N
+hsa-mir-1251	2	1.769457	N
+hsa-mir-1252	0	0.000000	N
+hsa-mir-1253	0	0.000000	N
+hsa-mir-1254-1	3	2.654186	N
+hsa-mir-1254-2	3	2.654186	N
+hsa-mir-1255a	2	1.769457	N
+hsa-mir-1255b-1	0	0.000000	N
+hsa-mir-1255b-2	0	0.000000	N
+hsa-mir-1256	0	0.000000	N
+hsa-mir-1257	0	0.000000	N
+hsa-mir-1258	2	1.769457	N
+hsa-mir-125a	1127	997.089243	N
+hsa-mir-125b-1	382	337.966363	N
+hsa-mir-125b-2	408	360.969309	N
+hsa-mir-126	2251	1991.524299	N
+hsa-mir-1260a	0	0.000000	N
+hsa-mir-1260b	0	0.000000	N
+hsa-mir-1261	0	0.000000	N
+hsa-mir-1262	0	0.000000	N
+hsa-mir-1263	0	0.000000	N
+hsa-mir-1264	0	0.000000	N
+hsa-mir-1265	0	0.000000	N
+hsa-mir-1266	34	30.080776	N
+hsa-mir-1267	0	0.000000	N
+hsa-mir-1268a	0	0.000000	N
+hsa-mir-1268b	0	0.000000	N
+hsa-mir-1269a	133	117.668917	N
+hsa-mir-1269b	0	0.000000	N
+hsa-mir-127	1660	1468.649639	N
+hsa-mir-1270	4	3.538915	N
+hsa-mir-1271	5	4.423643	N
+hsa-mir-1272	0	0.000000	N
+hsa-mir-1273a	0	0.000000	N
+hsa-mir-1273c	0	0.000000	N
+hsa-mir-1273d	0	0.000000	N
+hsa-mir-1273e	0	0.000000	N
+hsa-mir-1273f	0	0.000000	N
+hsa-mir-1273g	0	0.000000	N
+hsa-mir-1273h	0	0.000000	N
+hsa-mir-1275	1	0.884729	N
+hsa-mir-1276	0	0.000000	N
+hsa-mir-1277	1	0.884729	N
+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	49	43.351706	N
+hsa-mir-128-2	31	27.426590	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
+hsa-mir-1283-1	0	0.000000	N
+hsa-mir-1283-2	0	0.000000	N
+hsa-mir-1284	0	0.000000	N
+hsa-mir-1285-1	0	0.000000	N
+hsa-mir-1285-2	0	0.000000	N
+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	61	53.968451	N
+hsa-mir-1288	3	2.654186	N
+hsa-mir-1289-1	0	0.000000	N
+hsa-mir-1289-2	0	0.000000	N
+hsa-mir-129-1	3	2.654186	N
+hsa-mir-129-2	2	1.769457	N
+hsa-mir-1290	0	0.000000	N
+hsa-mir-1291	2	1.769457	N
+hsa-mir-1292	0	0.000000	N
+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	0	0.000000	N
+hsa-mir-1295a	1	0.884729	N
+hsa-mir-1295b	0	0.000000	N
+hsa-mir-1296	10	8.847287	N
+hsa-mir-1297	0	0.000000	N
+hsa-mir-1298	0	0.000000	N
+hsa-mir-1299	0	0.000000	N
+hsa-mir-1301	36	31.850233	N
+hsa-mir-1302-1	0	0.000000	N
+hsa-mir-1302-10	0	0.000000	N
+hsa-mir-1302-11	0	0.000000	N
+hsa-mir-1302-2	0	0.000000	N
+hsa-mir-1302-3	0	0.000000	N
+hsa-mir-1302-4	0	0.000000	N
+hsa-mir-1302-5	0	0.000000	N
+hsa-mir-1302-6	0	0.000000	N
+hsa-mir-1302-7	0	0.000000	N
+hsa-mir-1302-8	0	0.000000	N
+hsa-mir-1302-9	0	0.000000	N
+hsa-mir-1303	1	0.884729	N
+hsa-mir-1304	0	0.000000	N
+hsa-mir-1305	1	0.884729	N
+hsa-mir-1306	9	7.962558	N
+hsa-mir-1307	2029	1795.114528	N
+hsa-mir-130a	118	104.397986	N
+hsa-mir-130b	50	44.236435	N
+hsa-mir-132	64	56.622637	N
+hsa-mir-1321	0	0.000000	N
+hsa-mir-1322	0	0.000000	N
+hsa-mir-1323	0	0.000000	N
+hsa-mir-1324	0	0.000000	N
+hsa-mir-133a-1	0	0.000000	N
+hsa-mir-133a-2	1	0.884729	Y
+hsa-mir-133b	1	0.884729	Y
+hsa-mir-134	739	653.814508	N
+hsa-mir-1343	1	0.884729	N
+hsa-mir-135a-1	1	0.884729	N
+hsa-mir-135a-2	2	1.769457	N
+hsa-mir-135b	4	3.538915	N
+hsa-mir-136	98	86.703412	N
+hsa-mir-137	1	0.884729	N
+hsa-mir-138-1	0	0.000000	N
+hsa-mir-138-2	0	0.000000	N
+hsa-mir-139	29	25.657132	N
+hsa-mir-140	757	669.739624	N
+hsa-mir-141	2401	2124.233604	N
+hsa-mir-142	5703	5045.607764	N
+hsa-mir-143	17672	15634.925550	N
+hsa-mir-144	34	30.080776	N
+hsa-mir-145	827	731.670633	N
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+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	206	182.254112	N
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+hsa-mir-148a	65544	57988.657778	N
+hsa-mir-148b	492	435.286519	N
+hsa-mir-149	476	421.130860	N
+hsa-mir-150	723	639.658849	N
+hsa-mir-151a	4506	3986.587513	N
+hsa-mir-151b	1	0.884729	N
+hsa-mir-152	328	290.191013	N
+hsa-mir-153-1	0	0.000000	N
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+hsa-mir-154	10	8.847287	N
+hsa-mir-155	977	864.379938	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	281	248.608764	N
+hsa-mir-15b	227	200.833414	N
+hsa-mir-16-1	401	354.776208	N
+hsa-mir-16-2	423	374.240239	N
+hsa-mir-17	831	735.209548	Y
+hsa-mir-181a-1	1113	984.703041	N
+hsa-mir-181a-2	1162	1028.054747	N
+hsa-mir-181b-1	190	168.098453	N
+hsa-mir-181b-2	186	164.559538	N
+hsa-mir-181c	66	58.392094	N
+hsa-mir-181d	12	10.616744	N
+hsa-mir-182	21139	18702.279946	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	7853	6947.774465	N
+hsa-mir-184	12	10.616744	N
+hsa-mir-185	177	156.596980	N
+hsa-mir-186	593	524.644118	N
+hsa-mir-187	20	17.694574	N
+hsa-mir-188	6	5.308372	N
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+hsa-mir-18b	0	0.000000	N
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+hsa-mir-190a	7	6.193101	N
+hsa-mir-190b	25	22.118217	N
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+hsa-mir-192	541	478.638226	Y
+hsa-mir-193a	504	445.903264	N
+hsa-mir-193b	90	79.625583	N
+hsa-mir-194-1	100	88.472870	N
+hsa-mir-194-2	115	101.743800	N
+hsa-mir-195	65	57.507365	N
+hsa-mir-196a-1	261	230.914190	N
+hsa-mir-196a-2	352	311.424502	N
+hsa-mir-196b	418	369.816596	N
+hsa-mir-197	518	458.289466	N
+hsa-mir-1972-1	0	0.000000	N
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+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	5748	5085.420556	Y
+hsa-mir-199a-2	9918	8774.739226	Y
+hsa-mir-199b	12799	11323.642605	Y
+hsa-mir-19a	48	42.466978	N
+hsa-mir-19b-1	79	69.893567	N
+hsa-mir-19b-2	65	57.507365	N
+hsa-mir-200a	1175	1039.556220	N
+hsa-mir-200b	890	787.408541	N
+hsa-mir-200c	17623	15591.573844	N
+hsa-mir-202	2	1.769457	N
+hsa-mir-203a	1758	1555.353051	N
+hsa-mir-203b	15	13.270930	N
+hsa-mir-204	5	4.423643	N
+hsa-mir-205	1915	1694.255457	N
+hsa-mir-2052	0	0.000000	N
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+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	391	345.928921	N
+hsa-mir-20b	42	37.158605	N
+hsa-mir-21	415341	367464.102133	N
+hsa-mir-210	1679	1485.459484	N
+hsa-mir-211	0	0.000000	N
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+hsa-mir-2113	0	0.000000	N
+hsa-mir-2114	0	0.000000	N
+hsa-mir-2115	6	5.308372	N
+hsa-mir-2116	2	1.769457	N
+hsa-mir-2117	1	0.884729	N
+hsa-mir-212	3	2.654186	N
+hsa-mir-214	45	39.812791	N
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+hsa-mir-216a	0	0.000000	N
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+hsa-mir-217	20	17.694574	N
+hsa-mir-218-1	11	9.732016	N
+hsa-mir-218-2	11	9.732016	N
+hsa-mir-219a-1	1	0.884729	N
+hsa-mir-219a-2	1	0.884729	N
+hsa-mir-219b	1	0.884729	N
+hsa-mir-22	113361	100293.729928	N
+hsa-mir-221	175	154.827522	N
+hsa-mir-222	105	92.896513	N
+hsa-mir-223	147	130.055119	N
+hsa-mir-224	16	14.155659	N
+hsa-mir-2276	1	0.884729	N
+hsa-mir-2277	1	0.884729	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	61	53.968451	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	2061	1823.425846	Y
+hsa-mir-23b	1495	1322.669403	Y
+hsa-mir-23c	0	0.000000	N
+hsa-mir-24-1	503	445.018535	N
+hsa-mir-24-2	490	433.517062	N
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+hsa-mir-25	6321	5592.370100	N
+hsa-mir-2681	0	0.000000	N
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+hsa-mir-26a-1	881	779.445983	N
+hsa-mir-26a-2	813	719.284431	N
+hsa-mir-26b	607	537.030320	N
+hsa-mir-27a	570	504.295358	Y
+hsa-mir-27b	667	590.114042	Y
+hsa-mir-28	2849	2520.592060	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	8	7.077830	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	6	5.308372	N
+hsa-mir-29a	4967	4394.447443	N
+hsa-mir-29b-1	687	607.808615	N
+hsa-mir-29b-2	772	683.010555	N
+hsa-mir-29c	2210	1955.250422	N
+hsa-mir-300	0	0.000000	N
+hsa-mir-301a	32	28.311318	N
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+hsa-mir-3064	0	0.000000	N
+hsa-mir-3065	275	243.300392	N
+hsa-mir-3074	11	9.732016	N
+hsa-mir-30a	26804	23714.268020	Y
+hsa-mir-30b	756	668.854896	Y
+hsa-mir-30c-1	663	586.575127	Y
+hsa-mir-30c-2	662	585.690398	Y
+hsa-mir-30d	19253	17033.681622	N
+hsa-mir-30e	15599	13800.882959	Y
+hsa-mir-31	12	10.616744	N
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+hsa-mir-3678	1	0.884729	N
+hsa-mir-3679	1	0.884729	N
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+hsa-mir-3690-2	0	0.000000	N
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+hsa-mir-374c	1	0.884729	Y
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+hsa-mir-376a-2	2	1.769457	N
+hsa-mir-376b	1	0.884729	Y
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+hsa-mir-378c	7	6.193101	N
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+hsa-mir-483	5	4.423643	N
+hsa-mir-484	153	135.363491	N
+hsa-mir-485	8	7.077830	N
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+hsa-mir-486-2	11	9.732016	N
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+hsa-mir-494	1	0.884729	N
+hsa-mir-495	29	25.657132	N
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+hsa-mir-500b	12	10.616744	Y
+hsa-mir-501	185	163.674809	N
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+hsa-mir-503	48	42.466978	N
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+hsa-mir-5047	0	0.000000	N
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+hsa-mir-519a-2	1	0.884729	Y
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+hsa-mir-532	1372	1213.847774	N
+hsa-mir-539	40	35.389148	N
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+hsa-mir-550a-2	2	1.769457	N
+hsa-mir-550a-3	1	0.884729	N
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+hsa-mir-5699	1	0.884729	N
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+hsa-mir-625	195	172.522096	N
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+hsa-mir-627	1	0.884729	N
+hsa-mir-628	92	81.395040	N
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+hsa-mir-631	0	0.000000	N
+hsa-mir-632	1	0.884729	N
+hsa-mir-633	0	0.000000	N
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+hsa-mir-641	0	0.000000	N
+hsa-mir-642a	4	3.538915	N
+hsa-mir-642b	0	0.000000	N
+hsa-mir-643	1	0.884729	N
+hsa-mir-644a	0	0.000000	N
+hsa-mir-645	1	0.884729	N
+hsa-mir-646	0	0.000000	N
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+hsa-mir-6499	0	0.000000	N
+hsa-mir-650	0	0.000000	N
+hsa-mir-6500	0	0.000000	N
+hsa-mir-6501	0	0.000000	N
+hsa-mir-6502	1	0.884729	N
+hsa-mir-6503	0	0.000000	N
+hsa-mir-6504	0	0.000000	N
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+hsa-mir-6506	0	0.000000	N
+hsa-mir-6507	0	0.000000	N
+hsa-mir-6508	1	0.884729	N
+hsa-mir-6509	0	0.000000	N
+hsa-mir-651	5	4.423643	N
+hsa-mir-6510	1	0.884729	N
+hsa-mir-6511a-1	0	0.000000	N
+hsa-mir-6511a-2	0	0.000000	N
+hsa-mir-6511a-3	0	0.000000	N
+hsa-mir-6511a-4	0	0.000000	N
+hsa-mir-6511b-1	1	0.884729	N
+hsa-mir-6511b-2	1	0.884729	N
+hsa-mir-6512	0	0.000000	N
+hsa-mir-6513	0	0.000000	N
+hsa-mir-6514	1	0.884729	N
+hsa-mir-6515	0	0.000000	N
+hsa-mir-6516	0	0.000000	N
+hsa-mir-652	47	41.582249	N
+hsa-mir-653	44	38.928063	N
+hsa-mir-654	8	7.077830	N
+hsa-mir-655	5	4.423643	N
+hsa-mir-656	1	0.884729	N
+hsa-mir-657	0	0.000000	N
+hsa-mir-658	1	0.884729	N
+hsa-mir-659	2	1.769457	N
+hsa-mir-660	82	72.547753	N
+hsa-mir-661	0	0.000000	N
+hsa-mir-662	0	0.000000	N
+hsa-mir-663a	0	0.000000	N
+hsa-mir-663b	0	0.000000	N
+hsa-mir-664a	98	86.703412	N
+hsa-mir-664b	3	2.654186	N
+hsa-mir-665	1	0.884729	N
+hsa-mir-668	0	0.000000	N
+hsa-mir-670	0	0.000000	N
+hsa-mir-671	17	15.040388	N
+hsa-mir-6715a	0	0.000000	N
+hsa-mir-6715b	0	0.000000	N
+hsa-mir-6716	1	0.884729	N
+hsa-mir-6717	0	0.000000	N
+hsa-mir-6718	10	8.847287	N
+hsa-mir-6719	0	0.000000	N
+hsa-mir-6720	0	0.000000	N
+hsa-mir-6721	1	0.884729	N
+hsa-mir-6722	0	0.000000	N
+hsa-mir-6723	0	0.000000	N
+hsa-mir-6724-1	0	0.000000	N
+hsa-mir-6724-2	0	0.000000	N
+hsa-mir-6724-3	0	0.000000	N
+hsa-mir-6724-4	0	0.000000	N
+hsa-mir-6726	0	0.000000	N
+hsa-mir-6727	1	0.884729	N
+hsa-mir-6728	0	0.000000	N
+hsa-mir-6729	0	0.000000	N
+hsa-mir-6730	0	0.000000	N
+hsa-mir-6731	0	0.000000	N
+hsa-mir-6732	0	0.000000	N
+hsa-mir-6733	0	0.000000	N
+hsa-mir-6734	1	0.884729	N
+hsa-mir-6735	1	0.884729	N
+hsa-mir-6736	0	0.000000	N
+hsa-mir-6737	0	0.000000	N
+hsa-mir-6738	0	0.000000	N
+hsa-mir-6739	0	0.000000	N
+hsa-mir-6740	0	0.000000	N
+hsa-mir-6741	0	0.000000	N
+hsa-mir-6742	0	0.000000	N
+hsa-mir-6743	0	0.000000	N
+hsa-mir-6744	0	0.000000	N
+hsa-mir-6745	0	0.000000	N
+hsa-mir-6746	0	0.000000	N
+hsa-mir-6747	0	0.000000	N
+hsa-mir-6748	0	0.000000	N
+hsa-mir-6749	0	0.000000	N
+hsa-mir-675	49	43.351706	N
+hsa-mir-6750	0	0.000000	N
+hsa-mir-6751	0	0.000000	N
+hsa-mir-6752	0	0.000000	N
+hsa-mir-6753	0	0.000000	N
+hsa-mir-6754	0	0.000000	N
+hsa-mir-6755	2	1.769457	N
+hsa-mir-6756	0	0.000000	N
+hsa-mir-6757	0	0.000000	N
+hsa-mir-6758	0	0.000000	N
+hsa-mir-6759	0	0.000000	N
+hsa-mir-676	0	0.000000	N
+hsa-mir-6760	0	0.000000	N
+hsa-mir-6761	4	3.538915	N
+hsa-mir-6762	0	0.000000	N
+hsa-mir-6763	0	0.000000	N
+hsa-mir-6764	0	0.000000	N
+hsa-mir-6765	0	0.000000	N
+hsa-mir-6766	0	0.000000	N
+hsa-mir-6767	0	0.000000	N
+hsa-mir-6768	0	0.000000	N
+hsa-mir-6769a	0	0.000000	N
+hsa-mir-6769b	0	0.000000	N
+hsa-mir-6770-1	0	0.000000	N
+hsa-mir-6770-2	0	0.000000	N
+hsa-mir-6770-3	0	0.000000	N
+hsa-mir-6771	0	0.000000	N
+hsa-mir-6772	0	0.000000	N
+hsa-mir-6773	0	0.000000	N
+hsa-mir-6774	0	0.000000	N
+hsa-mir-6775	0	0.000000	N
+hsa-mir-6776	0	0.000000	N
+hsa-mir-6777	2	1.769457	N
+hsa-mir-6778	0	0.000000	N
+hsa-mir-6779	0	0.000000	N
+hsa-mir-6780a	0	0.000000	N
+hsa-mir-6780b	0	0.000000	N
+hsa-mir-6781	0	0.000000	N
+hsa-mir-6782	1	0.884729	N
+hsa-mir-6783	1	0.884729	N
+hsa-mir-6784	0	0.000000	N
+hsa-mir-6785	0	0.000000	N
+hsa-mir-6786	0	0.000000	N
+hsa-mir-6787	0	0.000000	N
+hsa-mir-6788	0	0.000000	N
+hsa-mir-6789	0	0.000000	N
+hsa-mir-6790	0	0.000000	N
+hsa-mir-6791	0	0.000000	N
+hsa-mir-6792	0	0.000000	N
+hsa-mir-6793	0	0.000000	N
+hsa-mir-6794	0	0.000000	N
+hsa-mir-6795	0	0.000000	N
+hsa-mir-6796	0	0.000000	N
+hsa-mir-6797	0	0.000000	N
+hsa-mir-6798	1	0.884729	N
+hsa-mir-6799	0	0.000000	N
+hsa-mir-6800	1	0.884729	N
+hsa-mir-6801	0	0.000000	N
+hsa-mir-6802	0	0.000000	N
+hsa-mir-6803	0	0.000000	N
+hsa-mir-6804	0	0.000000	N
+hsa-mir-6805	0	0.000000	N
+hsa-mir-6806	1	0.884729	N
+hsa-mir-6807	1	0.884729	N
+hsa-mir-6808	0	0.000000	N
+hsa-mir-6809	0	0.000000	N
+hsa-mir-6810	1	0.884729	N
+hsa-mir-6811	0	0.000000	N
+hsa-mir-6812	0	0.000000	N
+hsa-mir-6813	0	0.000000	N
+hsa-mir-6814	0	0.000000	N
+hsa-mir-6815	0	0.000000	N
+hsa-mir-6816	0	0.000000	N
+hsa-mir-6817	2	1.769457	N
+hsa-mir-6818	0	0.000000	N
+hsa-mir-6819	0	0.000000	N
+hsa-mir-6820	0	0.000000	N
+hsa-mir-6821	0	0.000000	N
+hsa-mir-6822	0	0.000000	N
+hsa-mir-6823	0	0.000000	N
+hsa-mir-6824	1	0.884729	N
+hsa-mir-6825	0	0.000000	N
+hsa-mir-6826	0	0.000000	N
+hsa-mir-6827	0	0.000000	N
+hsa-mir-6828	0	0.000000	N
+hsa-mir-6829	0	0.000000	N
+hsa-mir-6830	0	0.000000	N
+hsa-mir-6831	0	0.000000	N
+hsa-mir-6832	1	0.884729	N
+hsa-mir-6833	0	0.000000	N
+hsa-mir-6834	0	0.000000	N
+hsa-mir-6835	0	0.000000	N
+hsa-mir-6836	0	0.000000	N
+hsa-mir-6837	2	1.769457	N
+hsa-mir-6838	0	0.000000	N
+hsa-mir-6839	0	0.000000	N
+hsa-mir-6840	0	0.000000	N
+hsa-mir-6841	0	0.000000	N
+hsa-mir-6842	2	1.769457	N
+hsa-mir-6843	0	0.000000	N
+hsa-mir-6844	0	0.000000	N
+hsa-mir-6845	0	0.000000	N
+hsa-mir-6846	0	0.000000	N
+hsa-mir-6847	0	0.000000	N
+hsa-mir-6848	0	0.000000	N
+hsa-mir-6849	0	0.000000	N
+hsa-mir-6850	0	0.000000	N
+hsa-mir-6851	0	0.000000	N
+hsa-mir-6852	0	0.000000	N
+hsa-mir-6853	0	0.000000	N
+hsa-mir-6854	4	3.538915	N
+hsa-mir-6855	0	0.000000	N
+hsa-mir-6856	0	0.000000	N
+hsa-mir-6857	0	0.000000	N
+hsa-mir-6858	0	0.000000	N
+hsa-mir-6859-1	0	0.000000	N
+hsa-mir-6859-2	0	0.000000	N
+hsa-mir-6859-3	0	0.000000	N
+hsa-mir-6859-4	0	0.000000	N
+hsa-mir-6860	0	0.000000	N
+hsa-mir-6861	0	0.000000	N
+hsa-mir-6862-1	0	0.000000	N
+hsa-mir-6862-2	1	0.884729	N
+hsa-mir-6863	0	0.000000	N
+hsa-mir-6864	0	0.000000	N
+hsa-mir-6865	0	0.000000	N
+hsa-mir-6866	0	0.000000	N
+hsa-mir-6867	0	0.000000	N
+hsa-mir-6868	1	0.884729	N
+hsa-mir-6869	0	0.000000	N
+hsa-mir-6870	0	0.000000	N
+hsa-mir-6871	0	0.000000	N
+hsa-mir-6872	0	0.000000	N
+hsa-mir-6873	0	0.000000	N
+hsa-mir-6874	0	0.000000	N
+hsa-mir-6875	0	0.000000	N
+hsa-mir-6876	0	0.000000	N
+hsa-mir-6877	1	0.884729	N
+hsa-mir-6878	0	0.000000	N
+hsa-mir-6879	0	0.000000	N
+hsa-mir-6880	0	0.000000	N
+hsa-mir-6881	0	0.000000	N
+hsa-mir-6882	0	0.000000	N
+hsa-mir-6883	0	0.000000	N
+hsa-mir-6884	0	0.000000	N
+hsa-mir-6885	1	0.884729	N
+hsa-mir-6886	0	0.000000	N
+hsa-mir-6887	0	0.000000	N
+hsa-mir-6888	0	0.000000	N
+hsa-mir-6889	0	0.000000	N
+hsa-mir-6890	0	0.000000	N
+hsa-mir-6891	0	0.000000	N
+hsa-mir-6892	7	6.193101	N
+hsa-mir-6893	0	0.000000	N
+hsa-mir-6894	1	0.884729	N
+hsa-mir-6895	0	0.000000	N
+hsa-mir-7-1	79	69.893567	N
+hsa-mir-7-2	4	3.538915	N
+hsa-mir-7-3	1	0.884729	N
+hsa-mir-708	481	425.554504	N
+hsa-mir-7106	0	0.000000	N
+hsa-mir-7107	0	0.000000	N
+hsa-mir-7108	0	0.000000	N
+hsa-mir-7109	0	0.000000	N
+hsa-mir-711	0	0.000000	N
+hsa-mir-7110	0	0.000000	N
+hsa-mir-7111	0	0.000000	N
+hsa-mir-7112	1	0.884729	N
+hsa-mir-7113	0	0.000000	N
+hsa-mir-7114	0	0.000000	N
+hsa-mir-7150	0	0.000000	N
+hsa-mir-7151	2	1.769457	N
+hsa-mir-7152	0	0.000000	N
+hsa-mir-7153	0	0.000000	N
+hsa-mir-7154	0	0.000000	N
+hsa-mir-7155	1	0.884729	N
+hsa-mir-7156	4	3.538915	N
+hsa-mir-7157	0	0.000000	N
+hsa-mir-7158	0	0.000000	N
+hsa-mir-7159	0	0.000000	N
+hsa-mir-7160	0	0.000000	N
+hsa-mir-7161	0	0.000000	N
+hsa-mir-7162	0	0.000000	N
+hsa-mir-718	0	0.000000	N
+hsa-mir-744	46	40.697520	N
+hsa-mir-7515	0	0.000000	N
+hsa-mir-758	17	15.040388	N
+hsa-mir-759	0	0.000000	N
+hsa-mir-760	6	5.308372	N
+hsa-mir-761	0	0.000000	N
+hsa-mir-762	0	0.000000	N
+hsa-mir-764	0	0.000000	N
+hsa-mir-7641-1	0	0.000000	N
+hsa-mir-7641-2	0	0.000000	N
+hsa-mir-765	0	0.000000	N
+hsa-mir-766	12	10.616744	N
+hsa-mir-767	0	0.000000	N
+hsa-mir-769	44	38.928063	N
+hsa-mir-770	0	0.000000	N
+hsa-mir-7702	2	1.769457	N
+hsa-mir-7703	0	0.000000	N
+hsa-mir-7704	0	0.000000	N
+hsa-mir-7705	12	10.616744	N
+hsa-mir-7706	11	9.732016	N
+hsa-mir-7843	0	0.000000	N
+hsa-mir-7844	1	0.884729	N
+hsa-mir-7845	0	0.000000	N
+hsa-mir-7846	1	0.884729	N
+hsa-mir-7847	0	0.000000	N
+hsa-mir-7848	0	0.000000	N
+hsa-mir-7849	0	0.000000	N
+hsa-mir-7850	0	0.000000	N
+hsa-mir-7851	0	0.000000	N
+hsa-mir-7852	0	0.000000	N
+hsa-mir-7853	0	0.000000	N
+hsa-mir-7854	0	0.000000	N
+hsa-mir-7855	0	0.000000	N
+hsa-mir-7856	0	0.000000	N
+hsa-mir-7973-1	0	0.000000	N
+hsa-mir-7973-2	0	0.000000	N
+hsa-mir-7974	1	0.884729	N
+hsa-mir-7975	0	0.000000	N
+hsa-mir-7976	0	0.000000	N
+hsa-mir-7977	0	0.000000	N
+hsa-mir-7978	0	0.000000	N
+hsa-mir-802	0	0.000000	N
+hsa-mir-8052	0	0.000000	N
+hsa-mir-8053	0	0.000000	N
+hsa-mir-8054	0	0.000000	N
+hsa-mir-8055	0	0.000000	N
+hsa-mir-8056	0	0.000000	N
+hsa-mir-8057	0	0.000000	N
+hsa-mir-8058	0	0.000000	N
+hsa-mir-8059	0	0.000000	N
+hsa-mir-8060	0	0.000000	N
+hsa-mir-8061	0	0.000000	N
+hsa-mir-8062	0	0.000000	N
+hsa-mir-8063	0	0.000000	N
+hsa-mir-8064	0	0.000000	N
+hsa-mir-8065	0	0.000000	N
+hsa-mir-8066	0	0.000000	N
+hsa-mir-8067	0	0.000000	N
+hsa-mir-8068	0	0.000000	N
+hsa-mir-8069-1	0	0.000000	N
+hsa-mir-8069-2	0	0.000000	N
+hsa-mir-8070	0	0.000000	N
+hsa-mir-8071-1	1	0.884729	N
+hsa-mir-8071-2	0	0.000000	N
+hsa-mir-8072	0	0.000000	N
+hsa-mir-8073	0	0.000000	N
+hsa-mir-8074	0	0.000000	N
+hsa-mir-8075	0	0.000000	N
+hsa-mir-8076	0	0.000000	N
+hsa-mir-8077	0	0.000000	N
+hsa-mir-8078	0	0.000000	N
+hsa-mir-8079	0	0.000000	N
+hsa-mir-8080	0	0.000000	N
+hsa-mir-8081	0	0.000000	N
+hsa-mir-8082	0	0.000000	N
+hsa-mir-8083	0	0.000000	N
+hsa-mir-8084	0	0.000000	N
+hsa-mir-8085	0	0.000000	N
+hsa-mir-8086	0	0.000000	N
+hsa-mir-8087	0	0.000000	N
+hsa-mir-8088	0	0.000000	N
+hsa-mir-8089	0	0.000000	N
+hsa-mir-8485	0	0.000000	N
+hsa-mir-873	0	0.000000	N
+hsa-mir-874	45	39.812791	N
+hsa-mir-875	0	0.000000	N
+hsa-mir-876	0	0.000000	N
+hsa-mir-877	4	3.538915	N
+hsa-mir-885	0	0.000000	N
+hsa-mir-887	52	46.005892	N
+hsa-mir-888	0	0.000000	N
+hsa-mir-889	12	10.616744	N
+hsa-mir-890	0	0.000000	N
+hsa-mir-891a	13	11.501473	N
+hsa-mir-891b	0	0.000000	N
+hsa-mir-892a	0	0.000000	N
+hsa-mir-892b	0	0.000000	N
+hsa-mir-892c	0	0.000000	N
+hsa-mir-9-1	78	69.008838	N
+hsa-mir-9-2	96	84.933955	N
+hsa-mir-9-3	105	92.896513	N
+hsa-mir-920	0	0.000000	N
+hsa-mir-921	0	0.000000	N
+hsa-mir-922	0	0.000000	N
+hsa-mir-924	0	0.000000	N
+hsa-mir-92a-1	3893	3444.248821	N
+hsa-mir-92a-2	3487	3085.048970	N
+hsa-mir-92b	88	77.856125	N
+hsa-mir-93	7545	6675.278026	N
+hsa-mir-933	0	0.000000	N
+hsa-mir-934	1	0.884729	N
+hsa-mir-935	11	9.732016	N
+hsa-mir-936	0	0.000000	N
+hsa-mir-937	10	8.847287	N
+hsa-mir-938	0	0.000000	N
+hsa-mir-939	4	3.538915	N
+hsa-mir-940	9	7.962558	N
+hsa-mir-941-1	0	0.000000	N
+hsa-mir-941-2	0	0.000000	N
+hsa-mir-941-3	0	0.000000	N
+hsa-mir-941-4	0	0.000000	N
+hsa-mir-941-5	0	0.000000	N
+hsa-mir-942	10	8.847287	N
+hsa-mir-943	0	0.000000	N
+hsa-mir-944	2	1.769457	N
+hsa-mir-95	6	5.308372	N
+hsa-mir-9500	0	0.000000	N
+hsa-mir-96	9	7.962558	N
+hsa-mir-98	163	144.210778	N
+hsa-mir-99a	786	695.396757	Y
+hsa-mir-99b	61034	53998.531350	N

data/gdc_data_organized/29fdc464-f216-4828-b456-829f71436e27/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,82 @@
+GDC_Aliquot	Chromosome	Start	End	Num_Probes	Segment_Mean
+d6186247-4f38-472d-b836-e26beaf88153	1	3301765	23631293	11461	0.0067
+d6186247-4f38-472d-b836-e26beaf88153	1	23632431	23633123	2	-1.6774
+d6186247-4f38-472d-b836-e26beaf88153	1	23634378	72631678	28256	0.0028
+d6186247-4f38-472d-b836-e26beaf88153	1	72631758	72631908	2	1.5391
+d6186247-4f38-472d-b836-e26beaf88153	1	72632431	183796098	49607	0.0024
+d6186247-4f38-472d-b836-e26beaf88153	1	183796672	183796780	2	-1.4254
+d6186247-4f38-472d-b836-e26beaf88153	1	183801905	208264476	14873	0.0053
+d6186247-4f38-472d-b836-e26beaf88153	1	208284575	208284828	2	-1.3084
+d6186247-4f38-472d-b836-e26beaf88153	1	208285746	247650984	25628	0.0076
+d6186247-4f38-472d-b836-e26beaf88153	2	480597	241537572	132273	0.0036
+d6186247-4f38-472d-b836-e26beaf88153	3	2170634	30149632	16691	0.006
+d6186247-4f38-472d-b836-e26beaf88153	3	30151053	30151074	2	-1.3714
+d6186247-4f38-472d-b836-e26beaf88153	3	30151286	36813145	4118	0.0041
+d6186247-4f38-472d-b836-e26beaf88153	3	36814539	36818214	5	-1.1336
+d6186247-4f38-472d-b836-e26beaf88153	3	36819990	197812401	86429	0.0041
+d6186247-4f38-472d-b836-e26beaf88153	4	1059384	73747617	40395	0.0055
+d6186247-4f38-472d-b836-e26beaf88153	4	73751261	73751526	2	-1.5334
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data/gdc_data_organized/29fdc464-f216-4828-b456-829f71436e27/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.nocnv_grch38.seg.v2.txt

@@ -0,0 +1,193 @@
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+hsa-let-7a-2	26535	11671.816752	N
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+hsa-let-7d	1127	495.727812	N
+hsa-let-7e	2300	1011.689411	N
+hsa-let-7f-1	3919	1723.830784	N
+hsa-let-7f-2	3943	1734.387543	N
+hsa-let-7g	1381	607.453512	N
+hsa-let-7i	846	372.125757	N
+hsa-mir-1-1	11	4.838515	N
+hsa-mir-1-2	8	3.518920	N
+hsa-mir-100	3001	1320.034749	N
+hsa-mir-101-1	4509	1983.351111	N
+hsa-mir-101-2	4513	1985.110571	N
+hsa-mir-103a-1	26932	11846.443142	Y
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+hsa-mir-103b-1	0	0.000000	N
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+hsa-mir-106a	29	12.756084	Y
+hsa-mir-106b	779	342.654805	N
+hsa-mir-107	117	51.464200	Y
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+hsa-mir-10b	135857	59758.734069	N
+hsa-mir-1178	0	0.000000	N
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+hsa-mir-1180	12	5.278380	N
+hsa-mir-1181	0	0.000000	N
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+hsa-mir-1183	0	0.000000	N
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+hsa-mir-1226	1	0.439865	N
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+hsa-mir-1228	2	0.879730	N
+hsa-mir-1229	1	0.439865	N
+hsa-mir-1231	0	0.000000	N
+hsa-mir-1233-1	0	0.000000	N
+hsa-mir-1233-2	0	0.000000	N
+hsa-mir-1234	0	0.000000	N
+hsa-mir-1236	0	0.000000	N
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+hsa-mir-124-1	0	0.000000	N
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+hsa-mir-1245a	6	2.639190	N
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+hsa-mir-1247	41	18.034463	N
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+hsa-mir-1266	37	16.275004	N
+hsa-mir-1267	0	0.000000	N
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+hsa-mir-127	1524	670.354201	N
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+hsa-mir-1278	0	0.000000	N
+hsa-mir-1279	0	0.000000	N
+hsa-mir-128-1	75	32.989872	N
+hsa-mir-128-2	37	16.275004	N
+hsa-mir-1281	0	0.000000	N
+hsa-mir-1282	0	0.000000	N
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+hsa-mir-1286	0	0.000000	N
+hsa-mir-1287	13	5.718244	N
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+hsa-mir-129-1	0	0.000000	N
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+hsa-mir-1293	0	0.000000	N
+hsa-mir-1294	1	0.439865	N
+hsa-mir-1295a	4	1.759460	N
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+hsa-mir-1296	24	10.556759	N
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+hsa-mir-1301	24	10.556759	N
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+hsa-mir-133a-1	3	1.319595	N
+hsa-mir-133a-2	1	0.439865	N
+hsa-mir-133b	0	0.000000	N
+hsa-mir-134	886	389.720356	N
+hsa-mir-1343	0	0.000000	N
+hsa-mir-135a-1	8	3.518920	N
+hsa-mir-135a-2	8	3.518920	N
+hsa-mir-135b	10	4.398650	N
+hsa-mir-136	66	29.031087	N
+hsa-mir-137	0	0.000000	N
+hsa-mir-138-1	2	0.879730	N
+hsa-mir-138-2	1	0.439865	N
+hsa-mir-139	72	31.670277	N
+hsa-mir-140	1149	505.404841	N
+hsa-mir-141	3406	1498.180059	N
+hsa-mir-142	1946	855.977215	N
+hsa-mir-143	7282	3203.096649	N
+hsa-mir-144	52	22.872978	N
+hsa-mir-145	3767	1656.971310	N
+hsa-mir-1468	0	0.000000	N
+hsa-mir-1469	0	0.000000	N
+hsa-mir-146a	200	87.972992	N
+hsa-mir-146b	1113	489.569702	N
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+hsa-mir-147a	0	0.000000	N
+hsa-mir-147b	0	0.000000	N
+hsa-mir-148a	69221	30447.892497	N
+hsa-mir-148b	437	192.220988	N
+hsa-mir-149	632	277.994656	N
+hsa-mir-150	227	99.849346	N
+hsa-mir-151a	2156	948.348857	N
+hsa-mir-151b	1	0.439865	N
+hsa-mir-152	331	145.595302	N
+hsa-mir-153-1	2	0.879730	N
+hsa-mir-153-2	21	9.237164	N
+hsa-mir-1537	0	0.000000	N
+hsa-mir-1538	0	0.000000	N
+hsa-mir-1539	0	0.000000	N
+hsa-mir-154	20	8.797299	N
+hsa-mir-155	492	216.413561	N
+hsa-mir-1587	0	0.000000	N
+hsa-mir-15a	275	120.962864	N
+hsa-mir-15b	598	263.039247	N
+hsa-mir-16-1	904	397.637925	N
+hsa-mir-16-2	975	428.868337	N
+hsa-mir-17	835	367.287243	Y
+hsa-mir-181a-1	979	430.627797	N
+hsa-mir-181a-2	1694	745.131245	N
+hsa-mir-181b-1	129	56.742580	N
+hsa-mir-181b-2	121	53.223660	N
+hsa-mir-181c	227	99.849346	N
+hsa-mir-181d	86	37.828387	N
+hsa-mir-182	163237	71802.236713	N
+hsa-mir-1825	0	0.000000	N
+hsa-mir-1827	0	0.000000	N
+hsa-mir-183	45864	20173.966592	N
+hsa-mir-184	21	9.237164	N
+hsa-mir-185	103	45.306091	N
+hsa-mir-186	910	400.277115	N
+hsa-mir-187	7	3.079055	N
+hsa-mir-188	2	0.879730	N
+hsa-mir-18a	9	3.958785	N
+hsa-mir-18b	1	0.439865	N
+hsa-mir-1908	0	0.000000	N
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+hsa-mir-190a	12	5.278380	N
+hsa-mir-190b	191	84.014208	N
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+hsa-mir-1910	0	0.000000	N
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+hsa-mir-1915	0	0.000000	N
+hsa-mir-192	803	353.211564	N
+hsa-mir-193a	460	202.337882	N
+hsa-mir-193b	382	168.028415	N
+hsa-mir-194-1	221	97.210156	N
+hsa-mir-194-2	260	114.364890	N
+hsa-mir-195	58	25.512168	N
+hsa-mir-196a-1	16	7.037839	N
+hsa-mir-196a-2	37	16.275004	N
+hsa-mir-196b	1965	864.334649	N
+hsa-mir-197	1023	449.981856	N
+hsa-mir-1972-1	0	0.000000	N
+hsa-mir-1972-2	0	0.000000	N
+hsa-mir-1973	0	0.000000	N
+hsa-mir-1976	15	6.597974	N
+hsa-mir-198	0	0.000000	N
+hsa-mir-199a-1	4285	1884.821360	Y
+hsa-mir-199a-2	5815	2557.814751	Y
+hsa-mir-199b	5950	2617.196521	Y
+hsa-mir-19a	32	14.075679	N
+hsa-mir-19b-1	125	54.983120	N
+hsa-mir-19b-2	128	56.302715	N
+hsa-mir-200a	1568	689.708260	N
+hsa-mir-200b	1941	853.777890	N
+hsa-mir-200c	30911	13596.665824	N
+hsa-mir-202	2	0.879730	N
+hsa-mir-203a	9155	4026.963722	N
+hsa-mir-203b	164	72.137854	N
+hsa-mir-204	3	1.319595	N
+hsa-mir-205	16072	7069.509661	N
+hsa-mir-2052	0	0.000000	N
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+hsa-mir-206	0	0.000000	N
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+hsa-mir-208b	0	0.000000	N
+hsa-mir-20a	285	125.361514	N
+hsa-mir-20b	47	20.673653	N
+hsa-mir-21	562583	247460.549611	N
+hsa-mir-210	453	199.258828	N
+hsa-mir-211	0	0.000000	N
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+hsa-mir-2113	0	0.000000	N
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+hsa-mir-212	0	0.000000	N
+hsa-mir-214	97	42.666901	N
+hsa-mir-215	1	0.439865	N
+hsa-mir-216a	10	4.398650	N
+hsa-mir-216b	0	0.000000	N
+hsa-mir-217	207	91.052047	N
+hsa-mir-218-1	39	17.154733	N
+hsa-mir-218-2	43	18.914193	N
+hsa-mir-219a-1	9	3.958785	N
+hsa-mir-219a-2	0	0.000000	N
+hsa-mir-219b	1	0.439865	N
+hsa-mir-22	184945	81350.825297	N
+hsa-mir-221	2282	1003.771842	N
+hsa-mir-222	917	403.356170	N
+hsa-mir-223	185	81.375018	N
+hsa-mir-224	10	4.398650	N
+hsa-mir-2276	0	0.000000	N
+hsa-mir-2277	2	0.879730	N
+hsa-mir-2278	0	0.000000	N
+hsa-mir-2355	69	30.350682	N
+hsa-mir-2392	0	0.000000	N
+hsa-mir-23a	5483	2411.779584	Y
+hsa-mir-23b	2025	890.726547	Y
+hsa-mir-23c	0	0.000000	N
+hsa-mir-24-1	1083	476.373753	N
+hsa-mir-24-2	1125	494.848082	N
+hsa-mir-2467	0	0.000000	N
+hsa-mir-25	20989	9232.325676	N
+hsa-mir-2681	0	0.000000	N
+hsa-mir-2682	0	0.000000	N
+hsa-mir-26a-1	1428	628.127165	N
+hsa-mir-26a-2	1362	599.096078	N
+hsa-mir-26b	3188	1402.289497	N
+hsa-mir-27a	1042	458.339290	N
+hsa-mir-27b	1306	574.463640	N
+hsa-mir-28	15672	6893.563676	N
+hsa-mir-2861	0	0.000000	N
+hsa-mir-2909	0	0.000000	N
+hsa-mir-296	3	1.319595	N
+hsa-mir-297	0	0.000000	N
+hsa-mir-298	0	0.000000	N
+hsa-mir-299	9	3.958785	N
+hsa-mir-29a	11188	4921.209189	N
+hsa-mir-29b-1	766	336.936560	N
+hsa-mir-29b-2	1022	449.541991	N
+hsa-mir-29c	4746	2087.599107	N
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+hsa-mir-301a	27	11.876354	N
+hsa-mir-301b	5	2.199325	N
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+hsa-mir-3065	226	99.409481	N
+hsa-mir-3074	17	7.477704	N
+hsa-mir-30a	466927	205384.826858	Y
+hsa-mir-30b	957	420.950768	N
+hsa-mir-30c-1	2662	1170.920527	N
+hsa-mir-30c-2	2923	1285.725282	N
+hsa-mir-30d	15753	6929.192738	N
+hsa-mir-30e	31902	14032.572000	Y
+hsa-mir-31	31	13.635814	N
+hsa-mir-3115	0	0.000000	N
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+hsa-mir-330	25	10.996624	N
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+hsa-mir-338	2457	1080.748210	N
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+hsa-mir-34a	821	361.129133	N
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+hsa-mir-3675	0	0.000000	N
+hsa-mir-3677	5	2.199325	N
+hsa-mir-3678	1	0.439865	N
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+hsa-mir-3680-2	0	0.000000	N
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+hsa-mir-3682	2	0.879730	N
+hsa-mir-3683	0	0.000000	N
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+hsa-mir-3690-2	0	0.000000	N
+hsa-mir-3691	1	0.439865	N
+hsa-mir-3692	0	0.000000	N
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+hsa-mir-3714	0	0.000000	N
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+hsa-mir-373	0	0.000000	N
+hsa-mir-374a	1129	496.607541	N
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+hsa-mir-484	222	97.650021	N
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+hsa-mir-5047	0	0.000000	N
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+hsa-mir-509-3	1	0.439865	N
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+hsa-mir-514a-2	3	1.319595	N
+hsa-mir-514a-3	2	0.879730	N
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+hsa-mir-518a-2	0	0.000000	N
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+hsa-mir-532	962	423.150093	N
+hsa-mir-539	22	9.677029	N
+hsa-mir-541	2	0.879730	N
+hsa-mir-542	197	86.653397	N
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+hsa-mir-548i-1	0	0.000000	N
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+hsa-mir-548v	5	2.199325	N
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+hsa-mir-550a-2	4	1.759460	N
+hsa-mir-550a-3	4	1.759460	N
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+hsa-mir-615	9	3.958785	N
+hsa-mir-616	4	1.759460	N
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+hsa-mir-622	0	0.000000	N
+hsa-mir-623	0	0.000000	N
+hsa-mir-624	2	0.879730	N
+hsa-mir-625	711	312.743988	N
+hsa-mir-626	0	0.000000	N
+hsa-mir-627	2	0.879730	N
+hsa-mir-628	75	32.989872	N
+hsa-mir-629	197	86.653397	N
+hsa-mir-630	0	0.000000	N
+hsa-mir-631	0	0.000000	N
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+hsa-mir-633	0	0.000000	N
+hsa-mir-634	0	0.000000	N
+hsa-mir-635	0	0.000000	N
+hsa-mir-636	1	0.439865	N
+hsa-mir-637	0	0.000000	N
+hsa-mir-638	0	0.000000	N
+hsa-mir-639	0	0.000000	N
+hsa-mir-640	0	0.000000	N
+hsa-mir-641	0	0.000000	N
+hsa-mir-642a	4	1.759460	N
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data/gdc_data_organized/4e42fdc5-2a8b-49e9-87ef-6db7a6692d08/TCGA-B6-A0X4-01A-01-TS1.5a7fe82b-410b-42da-b90c-a63bc1cb2a38.svs

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+version https://git-lfs.github.com/spec/v1
+oid sha256:2f3a653f1f4f82820ca002600c1adb4e5bc53a0a553761e41dacebd42a3184e9
+size 282851959

data/gdc_data_organized/4e42fdc5-2a8b-49e9-87ef-6db7a6692d08/TCGA-BRCA.90a0edb3-d939-4c43-bbc5-0ed30023e35b.ascat2.allelic_specific.seg.txt

@@ -0,0 +1,71 @@
+GDC_Aliquot	Chromosome	Start	End	Copy_Number	Major_Copy_Number	Minor_Copy_Number
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	62920	73113314	2	1	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	73113554	73148457	3	2	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	73148843	121705338	2	1	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	143541857	208355284	3	2	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	208355686	209561663	2	1	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	209562492	210016398	3	2	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	210019302	237525104	2	1	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	237527517	237575245	3	2	1
+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr1	237575719	248930189	2	1	1
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+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr2	103540795	103699646	3	2	1
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+90a0edb3-d939-4c43-bbc5-0ed30023e35b	chr4	68929	190106768	2	1	1
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