| checkpoint_path: "Stack-Large/bc_large.ckpt" | |
| dataset_configs: | |
| - "human:parse_bio:sample:cell_type:false" | |
| - "human:Stack-CellxGene45M:donor_id:author_cell_type:true:feature_name" | |
| genelist_path: "Stack-Large-Aligned/basecount_1000per_15000max.pkl" | |
| save_dir: "stack_checkpoints/bc_large_aligned" | |
| max_epochs: 8 | |
| sample_size: 512 | |
| batch_size: 8 | |
| accumulate_grad_batches: 4 | |
| num_workers: 4 | |
| learning_rate: 0.00002 | |
| weight_decay: 0.003 | |
| scheduler_eta_min: 0.000005 | |
| replacement_ratio: 0.75 | |
| scheduler: cosine | |
| scheduler_T_max: 8 | |
| scheduler_warmup_epochs: 1 | |
| early_stopping_patience: 5 | |
| cache_file: "cache/parse_cgft.pkl" | |