id stringlengths 39 60 | task_type stringclasses 1
value | split stringclasses 1
value | messages listlengths 3 3 | metadata dict |
|---|---|---|---|---|
train:edit:Mic:ZNF599:chr19_34985433_34985933:2249 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Mic",
"gene_name": "ZNF599",
"peak_name": "chr19_34985433_34985933",
"source_relpath": "Mic/50.csv",
"source_row_index": 2249,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Mic",
"expre... |
train:edit:In:LINC00461:chr5_88736511_88737011:845 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "In",
"gene_name": "LINC00461",
"peak_name": "chr5_88736511_88737011",
"source_relpath": "In/50.csv",
"source_row_index": 845,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "In",
"express... |
train:edit:Ex:SYMPK:chr19_45975326_45975826:2216 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "SYMPK",
"peak_name": "chr19_45975326_45975826",
"source_relpath": "Ex/56.csv",
"source_row_index": 2216,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressio... |
train:edit:Ex:SEPHS1:chr10_13338275_13338775:3435 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "SEPHS1",
"peak_name": "chr10_13338275_13338775",
"source_relpath": "Ex/12.csv",
"source_row_index": 3435,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressi... |
train:edit:Ex:CDK9:chr9_127700607_127701107:3879 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "CDK9",
"peak_name": "chr9_127700607_127701107",
"source_relpath": "Ex/104.csv",
"source_row_index": 3879,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressi... |
train:edit:Ex:KLKB1:chr4_186387815_186388315:3543 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "KLKB1",
"peak_name": "chr4_186387815_186388315",
"source_relpath": "Ex/82.csv",
"source_row_index": 3543,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressi... |
train:edit:Mic:DRAM1:chr12_101871113_101871613:3435 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Mic",
"gene_name": "DRAM1",
"peak_name": "chr12_101871113_101871613",
"source_relpath": "Mic/23.csv",
"source_row_index": 3435,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Mic",
"expr... |
train:edit:End:CCDC154:chr16_1313256_1313756:2274 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "End",
"gene_name": "CCDC154",
"peak_name": "chr16_1313256_1313756",
"source_relpath": "End/4.csv",
"source_row_index": 2274,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "End",
"express... |
train:edit:Mic:CCDC186:chr10_113994356_113994856:1550 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Mic",
"gene_name": "CCDC186",
"peak_name": "chr10_113994356_113994856",
"source_relpath": "Mic/13.csv",
"source_row_index": 1550,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Mic",
"ex... |
train:edit:Ex:ATP1A4:chr1_160261704_160262204:92 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "ATP1A4",
"peak_name": "chr1_160261704_160262204",
"source_relpath": "Ex/9.csv",
"source_row_index": 92,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expression... |
train:edit:Ex:TICRR:chr15_89491661_89492161:2981 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "TICRR",
"peak_name": "chr15_89491661_89492161",
"source_relpath": "Ex/39.csv",
"source_row_index": 2981,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressio... |
train:edit:OPC:SP9:chr2_174526955_174527455:2880 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "OPC",
"gene_name": "SP9",
"peak_name": "chr2_174526955_174527455",
"source_relpath": "OPC/32.csv",
"source_row_index": 2880,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "OPC",
"express... |
train:edit:Mic:LINC02345:chr15_38050936_38051436:524 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Mic",
"gene_name": "LINC02345",
"peak_name": "chr15_38050936_38051436",
"source_relpath": "Mic/30.csv",
"source_row_index": 524,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Mic",
"exp... |
train:edit:OPC:LRRC8E:chr19_8049193_8049693:24 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "OPC",
"gene_name": "LRRC8E",
"peak_name": "chr19_8049193_8049693",
"source_relpath": "OPC/27.csv",
"source_row_index": 24,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "OPC",
"expressio... |
train:edit:Ast:BRICD5:chr16_2210841_2211341:1247 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ast",
"gene_name": "BRICD5",
"peak_name": "chr16_2210841_2211341",
"source_relpath": "Ast/22.csv",
"source_row_index": 1247,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ast",
"express... |
train:edit:Ex:GLRB:chr4_156901769_156902269:1664 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "GLRB",
"peak_name": "chr4_156901769_156902269",
"source_relpath": "Ex/82.csv",
"source_row_index": 1664,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expressio... |
train:edit:Mic:CORT:chr1_10388046_10388546:2829 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Mic",
"gene_name": "CORT",
"peak_name": "chr1_10388046_10388546",
"source_relpath": "Mic/1.csv",
"source_row_index": 2829,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Mic",
"expressio... |
train:edit:Ex:DDX54:chr12_113119971_113120471:1015 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "DDX54",
"peak_name": "chr12_113119971_113120471",
"source_relpath": "Ex/29.csv",
"source_row_index": 1015,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"express... |
train:edit:Ex:LINC01185:chr2_60676908_60677408:2671 | enhancer_editing | train | [
{
"role": "system",
"content": "You are a genomics assistant for multimodal regulatory-sequence reasoning. Read structured metadata, promoter DNA, and enhancer DNA together. Use the provided cellular context and TF program. Return concise biological reasoning inside <reasoning_start> and <reasoning_end>. Wh... | {
"cell_type": "Ex",
"gene_name": "LINC01185",
"peak_name": "chr2_60676908_60677408",
"source_relpath": "Ex/60.csv",
"source_row_index": 2671,
"split_name": "separatedQA",
"reasoning_richness": "raw",
"tf_scan_backend": "exact",
"tf_edit_backend": "exact",
"expression_embedding_key": "Ex",
"expres... |
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