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End of preview.
ENCODE ChIP-seq Vetorizado
Saída do pipeline de vetorização do fabricioslv/encode-chip-seq-subset.
3 estratégias
Stage 1 — Bins fixos (10kb)
Matriz densa (n_bins × n_tracks) por cromossomo. Formato: .npz.
Stage 2 — Peak detection (5σ) + embeddings
Picos detectados por threshold estatístico. Embedding de 9 features por pico.
Formato: peaks.tsv + embeddings.npz.
Stage 3 — Janelas sliding (10kb, stride 5kb) + DL tensors
Tensores normalizados (z-score) prontos para CNN/Transformer. Formato: .h5.
Parâmetros
- Bin size: 10000 bp
- Peak threshold: 5.0σ
- Window: 10000 bp, stride: 5000 bp
- Sub-sampling: 100 pontos por janela (Stage 3)
- Device: cpu
- Downloads last month
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