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2992799_0
public TemplateFactory newTemplateFactory(String template, ExpressionLanguage expressionLanguage) throws TemplateLoadingException { InputStream in = classLoader.getResourceAsStream(template); TemplateDocument doc = parseTemplate(in, expressionLanguage); try { FragmentList fragments = doc.normalize(); ...
2992799_1
public TemplateFactory newTemplateFactory(String template, ExpressionLanguage expressionLanguage) throws TemplateLoadingException { return newTemplateFactory(template, encoding, expressionLanguage); }
2992799_2
public WithBehavior(Expression expression, String currentObjectName, int line, int col) { super(line, col); this.expression = expression; this.currentObjectName = currentObjectName; }
2992799_3
@Override public String toString() { return "ConditionalAttributeBehavior{" + "expression=" + expression + ", attribute=" + attribute + ", line=" + line + ", col=" + col + '}'; }
2995118_0
public Collection<Gene> createLocusGenes(String authorReportedGene, String delimiter) { Collection<Gene> locusGene = new ArrayList<>(); if (authorReportedGene != null && !authorReportedGene.isEmpty()) { String[] genes = authorReportedGene.split(delimiter); Collection<String> genesToCreate = new ...
2995118_1
public RiskAllele createRiskAllele(String curatorEnteredRiskAllele, SingleNucleotidePolymorphism snp) { RiskAllele riskAllele = new RiskAllele(); riskAllele.setRiskAlleleName(StringProcessingService.tidy_curator_entered_string(curatorEnteredRiskAllele)); riskAllele.setSnp(snp); return riskAllele; }
2995118_2
public SingleNucleotidePolymorphism createSnp(String curatorEnteredSNP) { curatorEnteredSNP = StringProcessingService.tidy_curator_entered_string(curatorEnteredSNP); SingleNucleotidePolymorphism snp = new SingleNucleotidePolymorphism(); snp.setRsId(curatorEnteredSNP); return snp; }
2995118_3
public Association createAssociationFromUploadRow(AssociationUploadRow row) { Association newAssociation = new Association(); // Set EFO traits if (row.getEfoTrait() != null) { String[] uris = row.getEfoTrait().split(","); Collection<String> efoUris = new ArrayList<>(); for (String u...
2995118_4
public Association createAssociationFromUploadRow(AssociationUploadRow row) { Association newAssociation = new Association(); // Set EFO traits if (row.getEfoTrait() != null) { String[] uris = row.getEfoTrait().split(","); Collection<String> efoUris = new ArrayList<>(); for (String u...
2995118_5
public Association createAssociationFromUploadRow(AssociationUploadRow row) { Association newAssociation = new Association(); // Set EFO traits if (row.getEfoTrait() != null) { String[] uris = row.getEfoTrait().split(","); Collection<String> efoUris = new ArrayList<>(); for (String u...
2995118_6
public Association createAssociationFromUploadRow(AssociationUploadRow row) { Association newAssociation = new Association(); // Set EFO traits if (row.getEfoTrait() != null) { String[] uris = row.getEfoTrait().split(","); Collection<String> efoUris = new ArrayList<>(); for (String u...
2995118_7
@Override public Collection<AssociationUploadRow> readSheetRows(XSSFSheet sheet) { XSSFRow headerRow = sheet.getRow(0); Map<Integer, UploadFileHeader> headerRowMap = createHeaderMap(headerRow); // Create collection to store all newly created rows Collection<AssociationUploadRow> associationUploadRows = ...
2995118_8
@Override public Collection<AssociationUploadRow> readSheetRows(XSSFSheet sheet) { XSSFRow headerRow = sheet.getRow(0); Map<Integer, UploadFileHeader> headerRowMap = createHeaderMap(headerRow); // Create collection to store all newly created rows Collection<AssociationUploadRow> associationUploadRows = ...
2995118_9
@Override public Map<Integer, UploadFileHeader> createHeaderMap(XSSFRow row) { Map<Integer, UploadFileHeader> headerMap = new HashMap<>(); if (row.getPhysicalNumberOfCells() != 0) { short minColIx = row.getFirstCellNum(); short maxColIx = row.getLastCellNum(); for (short colIx = minColIx...
2997701_0
@Override public String getName(Metric metric) { MonitorConfig config = metric.getConfig(); TagList tags = config.getTags(); Tag domainTag = tags.getTag(JMX_DOMAIN_KEY); if (domainTag != null) { // jmx metric return handleJmxMetric(config, tags); } else { return handleMetric(config, tags); } }
2997701_1
@Override public String getName(Metric metric) { MonitorConfig config = metric.getConfig(); TagList tags = config.getTags(); Tag domainTag = tags.getTag(JMX_DOMAIN_KEY); if (domainTag != null) { // jmx metric return handleJmxMetric(config, tags); } else { return handleMetric(config, tags); } }
2997701_2
@Override public String getName(Metric metric) { MonitorConfig config = metric.getConfig(); TagList tags = config.getTags(); Tag domainTag = tags.getTag(JMX_DOMAIN_KEY); if (domainTag != null) { // jmx metric return handleJmxMetric(config, tags); } else { return handleMetric(config, tags); } }
2997701_3
public void stop() { try { if (socket != null) { socket.close(); socket = null; LOGGER.info("Disconnected from graphite server: {}", graphiteServerURI); } } catch (IOException e) { LOGGER.warn("Error Stopping", e); } }
2997701_4
public void stop() { try { if (socket != null) { socket.close(); socket = null; LOGGER.info("Disconnected from graphite server: {}", graphiteServerURI); } } catch (IOException e) { LOGGER.warn("Error Stopping", e); } }
2997701_5
List<Metric> pollImpl(long timestamp) { try { try (InputStream statusStream = fetcher.fetchStatus()) { return StatusPageParserUtil.parse(statusStream, timestamp); } } catch (IOException e) { logger.error("Could not fetch status page", e); return EMPTY_LIST; } }
2997701_6
List<Metric> pollImpl(long timestamp) { try { try (InputStream statusStream = fetcher.fetchStatus()) { return StatusPageParserUtil.parse(statusStream, timestamp); } } catch (IOException e) { logger.error("Could not fetch status page", e); return EMPTY_LIST; } }
2997701_7
List<Dimension> createDimensions(TagList tags) { List<Dimension> dimensionList = new ArrayList<>(tags.size()); for (Tag tag : tags) { dimensionList.add(new Dimension().withName(tag.getKey()).withValue(tag.getValue())); } return dimensionList; }
2997701_8
MetricDatum createMetricDatum(Metric metric) { MetricDatum metricDatum = new MetricDatum(); return metricDatum.withMetricName(metric.getConfig().getName()) .withDimensions(createDimensions(metric.getConfig().getTags())) .withUnit("None")//DataSourceTypeToAwsUnit.getUnit(metric.)) .withTimestamp(ne...
2997701_9
PutMetricDataRequest createPutRequest(List<Metric> batch) { List<MetricDatum> datumList = batch.stream().map(this::createMetricDatum) .collect(Collectors.toList()); return new PutMetricDataRequest().withNamespace(cloudWatchNamespace) .withMetricData(datumList); }
3010630_0
public void complete() throws WrongStateException, SystemException { invoke(Complete.class); }
3016145_0
public Iterable<LabeledBinaryExtraction> readExtractions() throws IOException { LBEIterator iter = new LBEIterator(in); return new IterableAdapter<LabeledBinaryExtraction>(iter); }
3016145_1
public void writeExtraction(LabeledBinaryExtraction extr) throws IOException { ChunkedSentence sent = extr.getSentence(); out.println(sent.getTokensAsString()); out.println(sent.getPosTagsAsString()); out.println(sent.getChunkTagsAsString()); ChunkedArgumentExtraction arg1 = extr.getArgument...
3016145_2
public ChunkedDocument readDocument(InputStream input, String id) throws ExtractorException { StringWriter writer = new StringWriter(); InputStreamReader reader = new InputStreamReader(input); try { FileUtils.pipe(reader, writer); return readDocument(writer.toString(), id); } cat...
3016145_3
public ChunkedDocument readDocument(InputStream input, String id) throws ExtractorException { StringWriter writer = new StringWriter(); InputStreamReader reader = new InputStreamReader(input); try { FileUtils.pipe(reader, writer); return readDocument(writer.toString(), id); } cat...
3016145_4
public ChunkedDocument readDocument(InputStream input, String id) throws ExtractorException { StringWriter writer = new StringWriter(); InputStreamReader reader = new InputStreamReader(input); try { FileUtils.pipe(reader, writer); return readDocument(writer.toString(), id); } cat...
3016145_5
public ChunkedSentence parseSentence(String sent) throws ParseException { // Spaces before square brackets goof things up for some reason sent = sent.replace(" ]", "]"); ArrayList<String> tokensList = new ArrayList<String>(); ArrayList<String> posTagsList = new ArrayList<String>(); ArrayList<String>...
3016145_6
@Override public NormalizedField normalizeField(ChunkedExtraction field) { boolean containsProperNoun = false; int lastNounIndex = -1; for (int i = 0; i < field.getLength(); i++) { String tag = field.getPosTag(i); if (tag.equals("NNP") || tag.equals("NNPS")) { containsProperNoun ...
3016145_7
public String[] tokenize(String text) throws SequenceException { // Code for splitting the text into tokens matching the patterns // See: http://snippets.dzone.com/posts/show/6453 if (text == null) { text = ""; } int lastMatch = 0; LinkedList<String> splitted = new LinkedList<String>(); ...
3016145_8
public Encoder(List<Set<String>> symbols) throws SequenceException { alphabets = new ArrayList<Set<String>>(symbols.size()); int encodingTableSize = 1; // Create the alphabets, checking to make sure that UNK does not appear // in the given symbols, and that the encoding table is not too large. for (...
3016145_9
public LayeredTokenMatcher matcher(LayeredSequence seq) throws SequenceException { String encoded = encodeSequence(seq); Matcher m = encodedPattern.matcher(encoded); return new LayeredTokenMatcher(m); }
3020895_0
public static AllophoneSet getAllophoneSet(String filename) throws MaryConfigurationException { InputStream fis = null; try { fis = new FileInputStream(filename); } catch (IOException e) { throw new MaryConfigurationException("Problem reading allophone file " + filename, e); } assert fis != null; return getAl...
3020895_1
public static boolean hasAllophoneSet(String identifier) { return allophoneSets.containsKey(identifier); }
3020895_2
public Allophone getAllophone(String ph) { Allophone allophone = allophones.get(ph); if (allophone == null) { throw new IllegalArgumentException(String.format( "Allophone `%s' could not be found in AllophoneSet `%s' (Locale: %s)", ph, name, locale)); } return allophone; }
3020895_3
public Allophone[] splitIntoAllophones(String allophoneString) { List<String> phones = splitIntoAllophoneList(allophoneString, false); Allophone[] allos = new Allophone[phones.size()]; for (int i = 0; i < phones.size(); i++) { try { allos[i] = getAllophone(phones.get(i)); } catch (IllegalArgumentException e) ...
3020895_4
public String splitAllophoneString(String allophoneString) { List<String> phones = splitIntoAllophoneList(allophoneString, true); StringBuilder pronunciation = new StringBuilder(); for (String a : phones) { if (pronunciation.length() > 0) pronunciation.append(" "); pronunciation.append(a); } return pronunci...
3020895_5
public List<String> splitIntoAllophoneList(String allophonesString) { return splitIntoAllophoneList(allophonesString, true); }
3020895_6
public List<String> splitIntoAllophoneList(String allophonesString) { return splitIntoAllophoneList(allophonesString, true); }
3020895_7
public String syllabify(String phoneString) throws IllegalArgumentException { // Before we process, a sanity check: if (phoneString.trim().isEmpty()) { throw new IllegalArgumentException("Cannot syllabify empty phone string"); } // First, split phoneString into a List of allophone Strings... List<String> allopho...
3020895_8
public String syllabify(String phoneString) throws IllegalArgumentException { // Before we process, a sanity check: if (phoneString.trim().isEmpty()) { throw new IllegalArgumentException("Cannot syllabify empty phone string"); } // First, split phoneString into a List of allophone Strings... List<String> allopho...
3020895_9
public String syllabify(String phoneString) throws IllegalArgumentException { // Before we process, a sanity check: if (phoneString.trim().isEmpty()) { throw new IllegalArgumentException("Cannot syllabify empty phone string"); } // First, split phoneString into a List of allophone Strings... List<String> allopho...
3026246_0
static List<File> locateFiles(String payloadFileSpec) { List<File> files = new ArrayList<>(); if ("-".equals(payloadFileSpec)) { // Reads list of files from stdin try (Reader reader = new InputStreamReader(System.in); BufferedReader bufferedReader = new BufferedReader(reader)) { ...
3026246_1
static List<File> locateFiles(String payloadFileSpec) { List<File> files = new ArrayList<>(); if ("-".equals(payloadFileSpec)) { // Reads list of files from stdin try (Reader reader = new InputStreamReader(System.in); BufferedReader bufferedReader = new BufferedReader(reader)) { ...
3026246_2
public TransmissionMessage newInstance(InputStream inputStream) throws IOException, OxalisContentException { return newInstance(inputStream, Tag.NONE); }
3026246_3
@Override public TransmissionResponse transmit(TransmissionMessage transmissionMessage, Span root) throws OxalisTransmissionException { Span span = tracer.buildSpan("transmit").asChildOf(root).start(); try { return perform(transmissionMessage, span); } finally { span.finish(); } ...
3026246_4
@Override public TransmissionResponse transmit(TransmissionMessage transmissionMessage, Span root) throws OxalisTransmissionException { Span span = tracer.buildSpan("transmit").asChildOf(root).start(); try { return perform(transmissionMessage, span); } finally { span.finish(); } ...
3026246_5
public MessageSender getMessageSender(TransportProfile transportProfile) throws OxalisTransmissionException { return injector.getInstance(Key.get(MessageSender.class, Names.named(getSender(transportProfile)))); }
3026246_6
public MessageSender getMessageSender(TransportProfile transportProfile) throws OxalisTransmissionException { return injector.getInstance(Key.get(MessageSender.class, Names.named(getSender(transportProfile)))); }
3026246_7
@Override public TransmissionResponse send(InputStream inputStream, Tag tag) throws IOException, OxalisTransmissionException, OxalisContentException { Span root = tracer.buildSpan("TransmissionService").start(); try { return send(inputStream, tag, root); } finally { root.finish(); ...
3026246_8
@Override public TransmissionResponse send(InputStream inputStream, Tag tag) throws IOException, OxalisTransmissionException, OxalisContentException { Span root = tracer.buildSpan("TransmissionService").start(); try { return send(inputStream, tag, root); } finally { root.finish(); ...
3026246_9
@Override public TransmissionResponse send(InputStream inputStream, Tag tag) throws IOException, OxalisTransmissionException, OxalisContentException { Span root = tracer.buildSpan("TransmissionService").start(); try { return send(inputStream, tag, root); } finally { root.finish(); ...
3028163_0
@Override public String getId() { return ID; }
3028163_1
@Override public String getName() { return "MicroProfile Config Property"; }
3028163_2
@Override public String getName() { return "MicroProfile Config Property"; }
3028163_3
@Override public FeatureUser getCurrentUser() { SimpleFeatureUser featureUser = null; User user = userService.getCurrentUser(); if (user != null) { featureUser = new SimpleFeatureUser(user.getUserId(), userService.isUserAdmin()); featureUser.setAttribute("email", user.getEmail()); fe...
3028163_4
@Override public FeatureUser getCurrentUser() { SimpleFeatureUser featureUser = null; User user = userService.getCurrentUser(); if (user != null) { featureUser = new SimpleFeatureUser(user.getUserId(), userService.isUserAdmin()); featureUser.setAttribute("email", user.getEmail()); fe...
3028163_5
@Override public FeatureUser getCurrentUser() { SimpleFeatureUser featureUser = null; User user = userService.getCurrentUser(); if (user != null) { featureUser = new SimpleFeatureUser(user.getUserId(), userService.isUserAdmin()); featureUser.setAttribute("email", user.getEmail()); fe...
3028163_6
@Override public boolean isActive(FeatureState featureState, FeatureUser user) { String allowedVersionsParam = featureState.getParameter(PARAM_VERSIONS); if (Strings.isNotBlank(allowedVersionsParam)) { String currentVersion = SystemProperty.applicationVersion.get(); if (Strings.isNotBlank(curren...
3028163_7
@Override public boolean isActive(FeatureState featureState, FeatureUser user) { String allowedVersionsParam = featureState.getParameter(PARAM_VERSIONS); if (Strings.isNotBlank(allowedVersionsParam)) { String currentVersion = SystemProperty.applicationVersion.get(); if (Strings.isNotBlank(curren...
3028163_8
@Override public boolean isActive(FeatureState featureState, FeatureUser user) { String allowedVersionsParam = featureState.getParameter(PARAM_VERSIONS); if (Strings.isNotBlank(allowedVersionsParam)) { String currentVersion = SystemProperty.applicationVersion.get(); if (Strings.isNotBlank(curren...
3028163_9
@Override public boolean isActive(FeatureState featureState, FeatureUser user) { String allowedVersionsParam = featureState.getParameter(PARAM_VERSIONS); if (Strings.isNotBlank(allowedVersionsParam)) { String currentVersion = SystemProperty.applicationVersion.get(); if (Strings.isNotBlank(curren...
3040093_0
@Override protected FilterBuilder getFilterBuilder(){ return super.getFilterBuilder(); }
3040093_1
@Override protected String getFilter() { return super.getFilter(); }
3040093_2
@Override protected String getFilter() { return super.getFilter(); }
3040093_3
public static RunHandler getController( final RunHandler.Context context, final RunHandlerConfig config){ final String name = "no.sesat.search.run.handler." + config.getClass().getAnnotation(Controller.class).value(); try{ final SiteClassLoaderFactory.Context ctlContext = Con...
3040093_4
public static String chop(final String input, final int length) { return chop(input, length, false); }
3040093_5
public static String chop(final String input, final int length) { return chop(input, length, false); }
3040093_6
public static String chop(final String input, final int length) { return chop(input, length, false); }
3040093_7
public static String chop(final String input, final int length) { return chop(input, length, false); }
3040093_8
public static String chop(final String input, final int length) { return chop(input, length, false); }
3040093_9
public static String chop(final String input, final int length) { return chop(input, length, false); }
3050780_0
public String getWebappUrl(){ return webappUrl; }
3050780_1
public String getPublicationId() { if (this.publicationId == null) { this.publicationId = extractBeforeSlash(this.url); } return this.publicationId; }
3050780_2
public String getArea() { if (this.area == null) { String completeArea = getCompleteArea(); if (Publication.DAV_AREA.equals(completeArea)) { this.area = Publication.AUTHORING_AREA; } else { this.area = completeArea; } } return this.area; }
3050780_3
public String getCompleteArea() { String pubId = getPublicationId(); if (this.completeArea == null && pubId != null) { String pubUrl = this.url.substring(pubId.length()); if (pubUrl.startsWith("/")) { this.completeArea = extractBeforeSlash(pubUrl.substring(1)); } else { ...
3050780_4
public String getDocumentUrl() { if (this.documentUrl == null) { String pubId = getPublicationId(); String area = getCompleteArea(); if (pubId != null && area != null) { String prefix = pubId + "/" + area; this.documentUrl = this.url.substring(prefix.length()); ...
3050780_5
protected void initParameters() { super.initParameters(); try { String pubId = new URLInformation().getPublicationId(); if (getSession().existsPublication(pubId)) { Publication publication = getSession().getPublication(pubId); setParameter(PUBLICATION, publication); ...
3061876_0
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_1
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_2
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_3
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_4
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_5
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_6
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_7
@Deprecated public static <T> T read(final String json, final Class<T> type) { try { return OBJECT_MAPPER.readValue(json, type); } catch (Exception e) { // Wrap into unchecked exception: throw new WrappedRuntimeException(e); } }
3061876_8
public static String maskApiKey(final String key) { int visibleChars = (int) (0.1 * key.length()); int right = visibleChars / 2; int left = visibleChars - right; // left >= right String beginning = key.substring(0, left); String end = key.substring(key.length() - right); return beginning + "..." + end; }
3069429_0
protected Map<String, Integer> tokenize(String text) { Map<String, Integer> tokenMap = newHashMap(); StringTokenizer st = new StringTokenizer(text, "\"{}[]:;|<>?`'.,/~!@#$%^&*()_-+= \t\n\r\f\\"); while (st.hasMoreTokens()) { String token = st.nextToken(); if (token.length() < MIN_TOKEN_LENGT...
3086072_0
@Background public void loadProject() { try { projectUserRelationDao.delete(projectUserRelationDao.queryForAll()); List<Status> statuses = backlogService.getStatuses(); for (Status status : statuses) { statusDao.createOrUpdate(status); Ln.d("put status id:%d", status.id); } List<Priority> priorities = ...
309964_10
public static String printURI(byte [] bs) { return printURI(bs, 0, bs.length, URIEscape.MIXED); }
309964_11
public static String printURI(byte [] bs) { return printURI(bs, 0, bs.length, URIEscape.MIXED); }
309964_12
@Override public String toString() { return printURI(this.component); }
309964_13
@Override public void setTime(long msec) { _binarytime = null; long binaryTimeAsLong = toBinaryTimeAsLong((msec/1000) * 1000, (msec % 1000) * 1000000L); super.setTime((binaryTimeAsLong / 4096L) * 1000L); super.setNanos((int)(((binaryTimeAsLong % 4096L) * 1000000000L) / 4096L)); }
309964_14
@Override public void setNanos(int nanos) { _binarytime = null; int quantizedNanos = (int)(((((nanos * 4096L + 500000000L) / 1000000000L)) * 1000000000L) / 4096L); if ((quantizedNanos < 0) || (quantizedNanos > 999999999)) { System.out.println("Quantizing nanos " + nanos + " resulted in out of range value " + quant...
309964_15
@Override public void setNanos(int nanos) { _binarytime = null; int quantizedNanos = (int)(((((nanos * 4096L + 500000000L) / 1000000000L)) * 1000000000L) / 4096L); if ((quantizedNanos < 0) || (quantizedNanos > 999999999)) { System.out.println("Quantizing nanos " + nanos + " resulted in out of range value " + quant...
309964_16
public CCNTime(long msec) { this((msec/1000) * 1000, (msec % 1000) * 1000000L); }
309964_17
@Override public int compareTo(Date o) { return super.compareTo(new CCNTime(o)); }