ProtProfileMD / README.md
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metadata
dataset_info:
  features:
    - name: domain_name
      dtype: string
    - name: temperature
      dtype: string
    - name: replica
      dtype: string
    - name: aa_sequence
      dtype: string
    - name: input_ids_prostT5
      list: int64
    - name: attention_mask_prostT5
      list: int64
    - name: input_ids_protT5
      list: int64
    - name: attention_mask_protT5
      list: int64
    - name: profiles
      list:
        list: float64
  splits:
    - name: train
      num_bytes: 3536945425
      num_examples: 130150
    - name: test
      num_bytes: 124378850
      num_examples: 4800
  download_size: 484556485
  dataset_size: 3661324275
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*
      - split: test
        path: data/test-*

ProtProfileMD Training Dataset

This is the dataset for training the ProtProfileMD method. It is split into train and test partitions.

Manuscript: https://www.biorxiv.org/content/10.64898/2026.01.21.700698v1

GitHub: https://github.com/finnlueth/ProtProfileMD