Datasets:

---

galkesten

/

plms_repeats_circuits

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 4 new columns ({'Accuracy_std', 'Task', 'N', 'Accuracy'}) and 28 missing columns ({'substitutions_score_percentage', 'substitutions_count', 'cluster_id', 'tax', 'rep_id', 'indels_percentage', 'repeat_times', 'BW-FROM', 'repeat_key', 'BW-TO', 'indels_score_percentage', 'level', 'diagonal', 'repeat_length', 'identity_percentage', 'repeat_alignments', 'total_score', 'seq', 'indels_count', 'repeat_locations', 'max_space', 'substitutions_percentage', 'blosum_similarity_percentage', 'similarity_percentage', 'seq_len', 'mutation_percentage', 'scores', 'min_space'}).

This happened while the csv dataset builder was generating data using

hf://datasets/galkesten/plms_repeats_circuits/results/evaluation/esm-c/analysis/tasks_performance.csv (at revision 9264344c1e7d5ac0cecab380f33ec55d086802c2), ['hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/approximate/evaluation/approximate_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/baseline/evaluation/baseline.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/identical/evaluation/identical_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/synthetic/evaluation/synthetic_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/analysis/tasks_performance.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/approximate/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/baseline/baseline_predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/identical/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/synthetic/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/analysis/tasks_performance.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/approximate/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/baseline/baseline_predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/identical/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/synthetic/predictions.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1890, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 760, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Task: string
              N: int64
              Accuracy: double
              Accuracy_std: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 708
              to
              {'cluster_id': Value('string'), 'rep_id': Value('string'), 'tax': Value('string'), 'seq': Value('string'), 'seq_len': Value('int64'), 'repeat_key': Value('string'), 'repeat_length': Value('int64'), 'repeat_times': Value('int64'), 'repeat_locations': Value('string'), 'min_space': Value('int64'), 'max_space': Value('int64'), 'repeat_alignments': Value('string'), 'total_score': Value('float64'), 'diagonal': Value('int64'), 'BW-FROM': Value('int64'), 'BW-TO': Value('int64'), 'level': Value('int64'), 'scores': Value('string'), 'mutation_percentage': Value('float64'), 'indels_count': Value('float64'), 'substitutions_count': Value('float64'), 'indels_percentage': Value('float64'), 'substitutions_percentage': Value('float64'), 'identity_percentage': Value('float64'), 'similarity_percentage': Value('float64'), 'blosum_similarity_percentage': Value('float64'), 'indels_score_percentage': Value('float64'), 'substitutions_score_percentage': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1892, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 4 new columns ({'Accuracy_std', 'Task', 'N', 'Accuracy'}) and 28 missing columns ({'substitutions_score_percentage', 'substitutions_count', 'cluster_id', 'tax', 'rep_id', 'indels_percentage', 'repeat_times', 'BW-FROM', 'repeat_key', 'BW-TO', 'indels_score_percentage', 'level', 'diagonal', 'repeat_length', 'identity_percentage', 'repeat_alignments', 'total_score', 'seq', 'indels_count', 'repeat_locations', 'max_space', 'substitutions_percentage', 'blosum_similarity_percentage', 'similarity_percentage', 'seq_len', 'mutation_percentage', 'scores', 'min_space'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/galkesten/plms_repeats_circuits/results/evaluation/esm-c/analysis/tasks_performance.csv (at revision 9264344c1e7d5ac0cecab380f33ec55d086802c2), ['hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/approximate/evaluation/approximate_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/baseline/evaluation/baseline.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/identical/evaluation/identical_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/datasets/synthetic/evaluation/synthetic_repeats_eval.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/analysis/tasks_performance.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/approximate/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/baseline/baseline_predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/identical/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm-c/synthetic/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/analysis/tasks_performance.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/approximate/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/baseline/baseline_predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/identical/predictions.csv', 'hf://datasets/galkesten/plms_repeats_circuits@9264344c1e7d5ac0cecab380f33ec55d086802c2/results/evaluation/esm3/synthetic/predictions.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)