CAPSUL / README.md
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CAPSUL: A Comprehensive Human Protein Benchmark for Subcellular Localization

Here we introduce the protein dataset used in our benchmark evaluation, with comprehensive 3D information and fine-grained localization annotations.

Each file includes the following data:

  • AlphaFold_pdb.tar: The original PDB data predicted by AlphaFold2 with full protein documentation.
  • coordinate.tar: The extracted C-alpha coordinates from AlphaFold2.
  • localization.tar: The separate detaild and 20-class fine-grained localization annotations from Uniprot and HPA; The union localization annotations from Union and HPA; Amino acids sequence and 3Di tokens.