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public static String ConvertValueForIndexing(Object value) { if (value instanceof String) return " " + value.toString().toUpperCase(); else if (value instanceof Date) { return value.toString(); } else { return value.toString(); } }
2
@Override public void fireEvent(UIEvent e) { super.fireEvent(e); if(e instanceof ValueChangeEvent) { processValueChangeEvent((ValueChangeEvent) e); } }
1
public void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { /* * name: username, password * return: [{"status":"", "reason":"", "data":""}] * * request: username, password * response: status (create a session, insert uId into session) */ ...
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public static boolean[] intToBoolean(int[] octets) throws SubneterException { if (octets.length != 4) { throw new SubneterException("Invalid IP adress too many or to less octets"); } for (int i = 0; i < 4; i++) { if (octets[i] < 0 || octets[i] > 255) ...
7
public void update() { player.update(); player.checkAttack(enemies); player.checkCoins(coins); finish.update(); finish.checkGrab(player); bg.setPosition(tileMap.getx(), 0); tileMap.setPosition( GamePanel.WIDTH / 2 - player.getx(), GamePanel.HEIGHT / 2 - player.gety()); ...
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public void test_03() { System.out.println("\n\nSuffixIndexerNmer: Add test"); String fastqFileName = "tests/short.fastq"; // Create indexer SuffixIndexerNmer<DnaAndQualitySequence> seqIndexNmer = new SuffixIndexerNmer<DnaAndQualitySequence>(new DnaQualSubsequenceComparator(true), 15); // Add all sequences ...
2
public void drawBackground(Graphics g) { // draw the background graphics from the superclass super.drawBackground(g); ImageManager im = ImageManager.getSingleton(); Image img; Position p; // draw the map as a matrix of tiles with cities on top for ( int r = 0; r...
3
private void readLimitedInto(HttpURLConnection conn, int limit, ByteArrayOutputStream read) throws IOException { BufferedReader in = new BufferedReader(new InputStreamReader(getConnectionInputStream(conn))); String line = null; while ((line = in.readLine()) != null) { read.write(line.getBytes()); if (read.s...
2
public static byte[] mapleDecrypt(byte[] data) { for (int j = 1; j <= 6; j++) { byte remember = 0; byte dataLength = (byte) (data.length & 0xFF); byte nextRemember; if (j % 2 == 0) { for (int i = 0; i < data.length; i++) { byte cur = data[i]; cur -= 0x48; cur = ((byte) (~cur & 0xFF)); ...
4
public static void save(String filename, double[] input) { // assumes 44,100 samples per second // use 16-bit audio, mono, signed PCM, little Endian AudioFormat format = new AudioFormat(SAMPLE_RATE, 16, 1, true, false); byte[] data = new byte[2 * input.length]; for (int i = 0; i...
6
public void setStart(int start) {this.start = start;}
0
@Override public String toString() { if (sb.length() >= delimiter.length()) sb.setLength(sb.length() - delimiter.length()); return sb.toString(); }
1
public static boolean computeCell(boolean[][] world, int col, int row) { boolean liveCell = getCell(world, col, row); int neighbours = countNeighbours(world, col, row); boolean nextCell = false; if (neighbours < 2) nextCell = false; if (liveCell && (neighbours == 2 |...
7
public static void awardBonusInternal() { BigInteger bonusReduction = BigInteger.valueOf(100); // To be worked out. System.out.print("Balances of all accounts (int): "); for (BankAccount account: christmasBank.getAllAccounts()) System.out.print(" " + account.getBalance(...
1
public List<List<Integer>> levelOrder(TreeNode root) { List<List<Integer>> result = new ArrayList<List<Integer>>(); if (root == null) { return result; } ArrayList<TreeNode> levelNode = new ArrayList<TreeNode>(); levelNode.add(root); while (!levelNode.isEmpty(...
7
@Override public Boolean doStep() { this.incrementStepNumber(); this.modelLogging("The step " + this.stepNumber + " is starting.\n" + "The model is:\n", this.steppingModel); this.notifyStatus("Step " + this.stepNumber + " started"); // ==> Convert the model into a standard linear model if it ...
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public Character() { _level = 1; _health = 0; _initiative = 0; _attributes = new Attributes(); _generator = new NormalSpread(); _race = new Deva(); _class = new Ardent(); _classMap = new Vector<>(); _setting = new DnD4e(); BaseGenerator g ...
5
public boolean attackEntityAsMob(Entity par1Entity) { if (super.attackEntityAsMob(par1Entity)) { if (par1Entity instanceof EntityLiving) { byte var2 = 0; if (this.worldObj.difficultySetting > 1) { if (this.w...
6
public List<List<Integer>> subsets(int[] S) { List<List<Integer>> ret = new ArrayList<List<Integer>>(); quickSort(S); int length = S.length; int[] index = new int[length]; for (int i = 0; i < length; i++) { index[i] = 0; } int currTurnLength = 0; int eleHave = 0; int lastTurnIndex = 0; while (...
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public Object getValueAt(int row, int col) { if (col == ENTITY) { // afficher l'entité dans laquelle la propriété est utilisée (Bug #712439). return getEntityNameOfProperty(row); } else { return rows.get(row)[col]; } }
1
@SuppressWarnings("unchecked") public static <VertexType extends BaseVertex, EdgeType extends BaseEdge<VertexType>> boolean isBipartite(BaseGraph<VertexType, EdgeType> graph) { //Copying to ColorableVertex ColorableVertex<VertexType>[] CVArray = (ColorableVertex<VertexType>[])Array.newInstance(ColorableVertex.c...
8
@Test public void eventBusNotNull() { assertNotNull( eventBus ); }
0
public void open() { JFileChooser FCdialog = new JFileChooser(); int opt = FCdialog.showOpenDialog(this); if(opt == JFileChooser.APPROVE_OPTION){ this.textPane.setText(""); try { this.console.setText("<html> Opening file: "+ FCdialog.getSelectedFile().getName()); Scanner scan = new Scanner(new Fi...
3
private static Enumeration getResources(final ClassLoader loader, final String name) { PrivilegedAction action = new PrivilegedAction() { public Object run() { try { if (loader != null) { return ...
4
public boolean start() { synchronized (optOutLock) { // Did we opt out? if (isOptOut()) { return false; } // Is metrics already running? if (taskId >= 0) { return true; } // Begin hitting the se...
6
private Statement Statement(ProcedureBuilder pb) throws Exception { Statement retval = null; switch (this.Current_Token) { case TOK_VAR_STRING: case TOK_VAR_NUMBER: case TOK_VAR_BOOL: retval = ParseVariableDeclStatement(pb); GetNext();...
9
public boolean validMove(int position, int player){ int[] field = getGameField(); if(field[position] == 0 && this.getTurn() == player){return true;} else {return false;} }
2
private SingleTypeFactory(Object typeAdapter, TypeToken<?> exactType, boolean matchRawType, Class<?> hierarchyType) { serializer = typeAdapter instanceof JsonSerializer ? (JsonSerializer<?>) typeAdapter : null; deserializer = typeAdapter instanceof JsonDeserializer ? (J...
7
@Test public void testImpossibleMove() { try { game = RulesParser.parse("./rules/Chess.xml"); Scanner sc = new Scanner(new File("./test/impossibleMoveBoard.txt")); // int xSize = 8; int ySize = 8; // int [][] newField = new int[xSize][ySize]; for (int y = ySize - 1; y > -1; --y) { for ...
7
public void printPercentages() { // -- Percentages -- System.out.println(" == Percentages for individual elements =="); System.out.println(); // Codon percentages System.out.println(" -- Percentages for each codon composition --"); System.out.println("| - | -AA | ...
7
public void sendGlobalMessage (String sender, String message) { for (Map.Entry<String, Socket> user : activeSockets.entrySet()) { if (user.getKey() != sender) { Socket socket = user.getValue(); try { PrintWriter out = new PrintWriter(socket.getOutp...
3
private static void writeResourceToFile( String resourceName, File file) throws IOException { if (file == null) { throw new NullPointerException("Target file may not be null"); } if (file.exists()) { throw new IllegalArgumentException( ...
8
public static void Test() { int option=0; Scanner Input = new Scanner (System.in); while(option != 3) { System.out.println("Fight the Kobold?"); System.out.println("1) Yes"); System.out.println("2) Save Game"); System.out.println("3) exit"); option = Input.nextInt(); if (option == 1) { //figh...
4
public String generateQueryString() { QueryString qs = new QueryString("page", Integer.toString(this.getPage())); qs.add("limit",Integer.toString(this.getLimit())); if (this.getKeyword() != null) qs.add("keyword", this.getKeyword()); if (this.getCreatedAtMin() != null) qs.add("created_...
9
@Override public void actionPerformed(ActionEvent e) { JTable productsTable = App.getInst().getView().getProductsTable(); JTable categoriesTable = App.getInst().getView().getCategoriesTable(); JComboBox<String> cmb = App.getInst().getView().getCountComboBox(); count = Integer.parseInt((String) cmb.getSelect...
3
private boolean checkUsage(AbstractCommand<P> command, String[] parameters) { String[] commandParameters = command.getParameters(); int[] limits = new int[2]; for (String parameter : commandParameters) { limits[1]++; if (!parameter.matches("\\[.*\\]")) { limits[0]++; } } return parameters.length ...
4
public void create(CmProfesionales cmProfesionales) { if (cmProfesionales.getPypAdmControlProfesionalesList() == null) { cmProfesionales.setPypAdmControlProfesionalesList(new ArrayList<PypAdmControlProfesionales>()); } EntityManager em = null; try { em = getEntity...
7
public void readScores() { Person second; Person first; Person temp; if (people.size() > 0) { for (int i = people.size() - 1; i > 0; i--) { first = people.get(i); second = people.get(i - 1); if (first.getScore() > second.getScore()) { temp = first; people.set(i, second); peopl...
4
private void sessionDelete(String cookie_vals){ String[] sTemp = cookie_vals.split("\\^"); String sID = sTemp[0]; int ver = Integer.parseInt(sTemp[1]); String ipP = sTemp[2].split(":")[0]; int portP = Integer.parseInt(sTemp[2].split(":")[1]); String ipB = sTemp[3].split(":")[0]; int p...
4
final public Expression Expression(int str_type) throws ParseException { final Variable v; final String s; switch ((jj_ntk==-1)?jj_ntk():jj_ntk) { case VARIABLE: v = Variable(); {if (true) return new VariableExpression(v);} break; case STRING_END: case STRIN...
8
public static void main(String[] args) { File configPath = new File("AztecConfig.conf"); if ( args.length > 0 ) configPath = new File(args[0]); if ( !configPath.exists() || !configPath.isFile() || !configPath.canRead() ) { System.out.println("Unable to open config file: "+configPath.getAbsolutePath()); ...
9
public byte[] getQ() { return q; }
0
public void act() { // spawn ships random if(Greenfoot.getRandomNumber(10000) < 10) { addObject(new ship1(), Greenfoot.getRandomNumber(900),10); } if(Greenfoot.getRandomNumber(10000) < 10) { addObject(new ship2(), Greenfoot.getRand...
4
@Before public void setUp() throws SQLException { // Setup a simple connection pool of size 10 source = new PGPoolingDataSource(); source.setDataSourceName("Mock DB Source"); source.setServerName("localhost:5432"); // Test server source.setDatabaseName("MockDB"); // Test DB ...
7
@Override public int hashCode() { final int prime = 31; int result = 1; result = prime * result + ((location == null) ? 0 : location.hashCode()); result = prime * result + ((recipes == null) ? 0 : recipes.hashCode()); result = prime * result + toolID; result = prime * result + ((toolName == null) ? 0 : toolName.h...
3
public void searchByID (LYNXsys system, String query, int page) { // search student by ID displayedSearchResults.removeAll(displayedSearchResults); for (int i = 0; i < system.getUsers().size(); i ++) { // loop through arraylist of students if (system.getUsers().get(i).getID().equalsIgnoreCase(query)){ // check ...
6
Space[] won() { int n = numToWin - 1; if (lastSpaceMoved == null) return null; int[] pos = lastSpaceMoved.getPos(); for (int i = 0, rowInd = pos[0]; i <= n; i++, rowInd = pos[0] - i) for (int j = 0, colInd = pos[1]; j <= n; j++, colInd = pos[1] - j) { boolean outOfBounds = rowInd < 0 || colInd < 0 ...
9
public static ButtonImage getTypeFromInt(int index) { switch (index) { case 0: return EMPTY; case 1: return ONE; case 2: return TWO; case 3: return TREE; case 4: return FOUR; case 5: return FIVE; case 6: return SIX; case 7: return SEVEN; case 8: return EIGHT; default: ...
9
private static void readFromFile(String filename){ BufferedReader br = null; String line; if(filename == null){ System.out.println("No file path specified!"); return; } File AddFile = new File(filename); if(!AddFile.exists()) { System.out.println("File " + filename + " not found!"); return; ...
7
@Override public void update(Graphics g) { Graphics2D g2 = (Graphics2D) g; g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON); g2.setRenderingHint(RenderingHints.KEY_RENDERING, RenderingHints.VALUE_RENDER_QUALITY); g2.setColor(Color.gray); g2.fillRect(0,0,getWidth()...
9
public void setPostNote(String postNote) { this.postNote = postNote; }
0
public void mouseRelease(int x, int y){ if(movingInputTime){ movingInputTime = false; ArrayList<Integer> times = loop.getTimes(); loop.setNewTime(node.getIndex(), (int) node.getTime()); //times.set(node.getIndex(), (int) node.getTime()); System.out.println(times.size()); } }
1
private void mkCfg () { for (String qp : qps) { try { File h265Cfg = new File("./Cfg/h265/"+seqName+qp+".cfg"); File psvdCfg = new File("./Cfg/psvd/"+seqName+"Residue"+qp+".cfg"); DirMaker.createFile(h265Cfg); DirMaker.createFile(psvdCf...
2
private void completeCursorMessage() { Vector<OSCMessage> messageList = new Vector<OSCMessage>(); OSCMessage frameMessage = new OSCMessage("/tuio/2Dcur"); frameMessage.addArgument("fseq"); frameMessage.addArgument(-1); OSCMessage aliveMessage = new OSCMessage("/tuio/2Dcur"); aliveMessage.addArgument("...
8
public void saveGraphAs(Graph graph, Component c) { this.graph = graph; JFileChooser fileChooser = new JFileChooser(); if (graph instanceof PetriNet) { fileChooser.setAcceptAllFileFilterUsed(false); fileChooser.addChoosableFileFilter(new FileNameExtensionFilter("Danes Pet...
6
public int[] search (ASEvaluation ASEval, Instances data) throws Exception { double best_merit = -Double.MAX_VALUE; double temp_merit; BitSet temp_group, best_group=null; if (!(ASEval instanceof SubsetEvaluator)) { throw new Exception(ASEval.getClass().getName() ...
9
@Override public boolean isVisibleAt(int posX, int posY) { if((posX/zoom) > originX && (posX/zoom) < (originX + width)) if((posY/zoom) > originY && (posY/zoom) < (originY + height)) return true; return false; }
4
private static int subStringForAcharAtAnIndex(String s, String set, List<String> subStrings, char ipChar, int index) { index = s.indexOf(ipChar, index + 1); int x = 1; int l = index - x; int r = index + x + 1; while (l >= 0 || r <= s.length()) { l = l < 0 ? 0 : l; ...
7
public String longestCommonPrefix(String[] strs) { if (strs.length == 0) { // important to check when you are done coding return ""; } String first = strs[0]; int i = 0; char tmp; while (i < first.length()) { tmp = first.charAt(i); for (int j = 1; j < strs.length; j++) { // the first word may ...
5
public int getValue(int skill) { return skillValues[skill]; }
0
public void initResources(Display display) { if (stockImages == null) { stockImages = new Image[stockImageLocations.length]; for (int i = 0; i < stockImageLocations.length; ++i) { Image image = createStockImage(display, stockImageLocations[i]); if (image == null) { freeResources(); throw ...
4
@Override public void run(){ byte[] byteTosend = new byte[1*1024]; try { for (int k = 0; k < 2/*200000*/; k++) { nioClientMT.publish(null, byteTosend, "#testtag"); } } catch (IOException e) { ...
3
public Map<Integer, InventoryItem> GrabFloors() { Map<Integer, InventoryItem> Items = new HashMap<Integer, InventoryItem>(); for(InventoryItem Item : this.Inventory.values()) { if (Item.GrabBaseItem().Type.contains("s")) { Items.put(Item.ID, Item); } } return Items; }
2
@Test public void testChangeInterfaceOfProperty() throws Exception { // connect to database PersistenceManager pm = new PersistenceManager(driver, database, login, password); // drop all tables pm.dropTable(Object.class); // create test objects OriginalObject one = new OriginalObject(); one.setValue(1)...
3
@Override public void execute(Profile profile, String[] args) { final int RATE = 10; try { Twitter twitter = profile.getTwitter(); TwitterBrain brain = profile.getMind(); brain.updateFriends(); logger.info("total friends count: " + ...
6
private void processBranches(FileData coverageData, StringBuilder lcov) { for (Integer lineNumber: coverageData.getBranchData().keySet()) { List<BranchData> conditions = coverageData.getBranchData().get(lineNumber); if (conditions != null) { for (int j = 0; j < conditions...
6
public static boolean addMail(MailItem mail) { if (!initialised) return false; Connection connection = null; PreparedStatement statement = null; ResultSet result = null; try { connection = DriverManager.getConnection(url, username, password); statement = connection.prepareStatement(INSERT_MESSAGE_COMMAN...
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public Long getId() { return Id; }
0
public void genererTableau(String fonction, ArrayList<Photographe> listeP, ArrayList<Historien> listeH) { String entete[] = {"ID", "Choisir " + fonction}; Photographe p; Historien h; jTable1.setToolTipText("Double clique pour choisir un utilisateur"); switch (fonction) { ...
4
public void BeginningThisHell(){ //Initialization of Stage objects massive Judge judge = new Judge(); for (int itanks = 0; itanks < amountTanks; itanks++) { tanks[itanks] = new Tank(); for(int i = 0; i < amountStage; i++) { stage[...
3
public void viewBoard(Board board) { int x, y; String row; Disc disc; int[] rowCount = {1,2,3,4,5,6,7,8}; int[] contents = board.getContents(); System.out.println(" A B C D E F G H"); for (y=1; y < BOARD_SIZE+1; y++) { row = ""; for (x=0; x < BOARD_SIZE+1; x++) { disc = n...
8
public double getFitness() { return fitness; }
0
@SuppressWarnings({"ToArrayCallWithZeroLengthArrayArgument"}) public void testValueCollectionToArray() { int element_count = 20; int[] keys = new int[element_count]; String[] vals = new String[element_count]; TIntObjectMap<String> map = new TIntObjectHashMap<String>(); for (...
6
@Override public boolean equals(Object object) { // TODO: Warning - this method won't work in the case the id fields are not set if (!(object instanceof Order)) { return false; } Order other = (Order) object; if ((this.orderid == null && other.orderid != null) || ...
5
public LocalInfo getReal() { LocalInfo real = this; while (real.shadow != null) real = real.shadow; return real; }
1
public static void main(String[] args){ Socket socket; try { socket = new Socket("localhost",1457); //code du client try { Thread.sleep(0); PrintWriter socketOut = new PrintWriter(socket.getOutputStream(), true); BufferedReader clavier = new BufferedReader(new InputStreamReader(System.in)); ...
5
public static void main(String[] args) { if (args.length < 1) { System.out.println(usage); System.exit(1); } int lines = 0; try { Class<?> c = Class.forName(args[0]); Method[] methods = c.getMethods(); Constructor[] constructors = c.getConstructors(); if (args.length == 1) { int ind...
6
public static void main(String args[]) { /* Set the Nimbus look and feel */ //<editor-fold defaultstate="collapsed" desc=" Look and feel setting code (optional) "> /* If Nimbus (introduced in Java SE 6) is not available, stay with the default look and feel. * For details see http://down...
6
private static boolean isPalindrome(String s) { char[] chs = s.toCharArray(); int i = 0; int j = chs.length - 1; while (i < j) { if (!(chs[i] == chs[j])) { return false; } i++; j--; } return true; }
2
private void afterQueryProcess(Statement statement, Connection connection, ResultSet result) { try { if (result != null) { result.close(); result = null; } } catch (SQLException ex) { } try { if (statement != null) { ...
7
public void modifyItem(Item item) { Connection con = null; PreparedStatement pstmt = null; try { DBconnection dbCon = new DBconnection(); Class.forName(dbCon.getJDBC_DRIVER()); con = DriverManager.getConnection(dbCon.getDATABASE_URL(), dbC...
4
public void setName(String name) throws ClusterException { if(name == null || name.equals("")) throw new ClusterException("The file name of the song cannot be null or empty string"); this.name= name; }
2
public void placeObject(Objects o) { for (Player p : Server.playerHandler.players){ if(p != null) { removeAllObjects(o); globalObjects.add(o); Client person = (Client)p; if(person != null){ if(person.heightLevel == o.getObjectHeight() && o.objectTicks == 0)...
6
public boolean destroyItem(MOB mob, Environmental dropThis, boolean quiet, boolean optimize) { String msgstr=null; final int material=(dropThis instanceof Item)?((Item)dropThis).material():-1; if(!quiet) switch(material&RawMaterial.MATERIAL_MASK) { case RawMaterial.MATERIAL_LIQUID: msgstr=L("<S-NAME> po...
9
public static int getMTU() { Enumeration<NetworkInterface> en = null; int minMTU = Integer.MAX_VALUE; try { en = NetworkInterface.getNetworkInterfaces(); while (en.hasMoreElements()) { NetworkInterface ni = en.nextElement(); int mtu = ni.ge...
4
public void paint(Graphics g){ super.paint(g); this.drawFields(g); //System.out.println("paint activited"); calender = Calendar.getInstance(); this.drawTime(g); }
0
public static boolean isInt(String str) { if (str == null || "".equalsIgnoreCase(str)) { return false; } for (String n : NUMBERS) { if (str.equalsIgnoreCase(n)) { return true; } } return false; }
4
public static void main(String[] args) { EntityManager em = new JPAUtil().getEntityManager(); ContaDAO dao = new ContaDAO(em); em.getTransaction().begin(); List<Conta> lista = dao.listaContaComGerente(); for (Conta conta : lista){ System.out.println(conta.getTitular()); if(conta.getGerente() != null)...
2
public CurlConnection(String endpoint, String user,String password, String curlCommand,String curlDrop, String curlURL, String curlUpdate){ Logger log = Logger.getLogger(this.getClass().getName()); log.setLevel(Level.FINE); this.setLogger(log); LogHandler.initLogFileHandler(log, "Connection"); this.curlCo...
1
private void readBlocks(Node parent, Automaton root, Set states, Document document) { Map i2b = new java.util.HashMap(); addBlocks(parent, root, states, i2b, document); }
0
private void doUpdate() { System.out.print("\n[Performing UPDATE] ... "); try { Statement st = conn.createStatement(); st.executeUpdate("UPDATE COFFEES SET PRICE = PRICE + 1"); } catch (SQLException ex) { System.err.println(ex.getMessage()); } }
1
public static List qualityList(Enumeration enm) { if(enm==null || !enm.hasMoreElements()) return Collections.EMPTY_LIST; Object list=null; Object qual=null; // Assume list will be well ordered and just add nonzero while(enm.hasMoreElements()) { ...
7
public Point[] findKClosestPoints(Point[] points, int k, final Point origin) { if (points == null || points.length == 0 || points.length < k) { return points; } Point[] result = new Point[k]; PriorityQueue<Point> queue = new PriorityQueue<Point>(k, new Comparator<Point>() { @Override public int c...
8
private void download(URL url, File file, int size) { System.out.println("Downloading: " + file.getName() + "..."); //minecraft.progressBar.setText(file.getName()); DataInputStream in = null; DataOutputStream out = null; try { byte[] data = new byte[4096]; in = new DataInputStream(url.openStream(...
7
private static void writeTrace(final Trace trace, final int traceId, final JsonGenerator generator) throws IOException { generator.writeStartObject(); generator.writeNumberField(JsonTraceCodec.TRACE_ID, traceId); generator.writeStringField(JsonTraceCodec.TRACE_NAME, trace....
7
public static void main(String[] args) { Heap h = Heap.make(S); for (int i=0; i<N; i++) { System.out.println("Allocating object " + i + " at address " + h.alloc(8)); } h.dump(); System.out.println("Free space remaining = " + h.freeSpace()); }
1
public SignatureVisitor visitClassBound() { if (state != FORMAL) { throw new IllegalStateException(); } state = BOUND; SignatureVisitor v = sv == null ? null : sv.visitClassBound(); return new CheckSignatureAdapter(TYPE_SIGNATURE, v); }
2
public byte[] getGenotypesScores() { int numSamples = getVcfFileIterator().getVcfHeader().getSampleNames().size(); // Not compressed? Parse codes if (!isCompressedGenotypes()) { byte gt[] = new byte[numSamples]; int idx = 0; for (VcfGenotype vgt : getVcfGenotypes()) gt[idx++] = (byte) vgt.getGenoty...
2
private Point searchSpace(Rectangle bounds, int sides, int i, double p) { // The bounds of the string int str_X = bounds.width; int str_Y = bounds.height; str_Y = bounds.height; int x=(int)(p*width); int l = 0; while (x > 0 && x< width - str_X) { int k = 0; int y= p_cen.y; while (y > 0 &&...
7
@Override public FunctionEvaluator getClone() { TabularFunction clonedT = new TabularFunction(); for (NodeVariable parameter : this.getParameters()) { clonedT.addParameter(parameter); } if (debug >= 2) { String dmethod = Thread.currentThread().getStackTra...
5