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def create_for ( line , search_result ) : '''Create a new " for loop " line as a replacement for the original code .'''
try : return line . format ( search_result . group ( "indented_for" ) , search_result . group ( "var" ) , search_result . group ( "start" ) , search_result . group ( "stop" ) , search_result . group ( "cond" ) ) except IndexError : return line . format ( search_result . group ( "indented_for" ) , search_result ...
def log_url ( self , url_data ) : """Write csv formatted url check info ."""
row = [ ] if self . has_part ( "urlname" ) : row . append ( url_data . base_url ) if self . has_part ( "parentname" ) : row . append ( url_data . parent_url ) if self . has_part ( "baseref" ) : row . append ( url_data . base_ref ) if self . has_part ( "result" ) : row . append ( url_data . result ) if s...
def _unscaled_dist ( self , X , X2 = None ) : """Compute the Euclidean distance between each row of X and X2 , or between each pair of rows of X if X2 is None ."""
# X , = self . _ slice _ X ( X ) if X2 is None : Xsq = np . sum ( np . square ( X ) , 1 ) r2 = - 2. * tdot ( X ) + ( Xsq [ : , None ] + Xsq [ None , : ] ) util . diag . view ( r2 ) [ : , ] = 0. # force diagnoal to be zero : sometime numerically a little negative r2 = np . clip ( r2 , 0 , np . inf ) ...
def has_methods ( * method_names ) : """Return a test function that , when given an object ( class or an instance ) , returns ` ` True ` ` if that object has all of the ( regular ) methods in ` ` method _ names ` ` . Note : this is testing for regular methods only and the test function will correctly return `...
def test ( obj ) : for method_name in method_names : try : method = getattr ( obj , method_name ) except AttributeError : return False else : if not callable ( method ) : return False if not isinstance ( obj , type ) : ...
def _get_delete_query ( self ) : """Get the query builder for a delete operation on the pivot . : rtype : orator . orm . Builder"""
foreign = self . get_attribute ( self . __foreign_key ) query = self . new_query ( ) . where ( self . __foreign_key , foreign ) return query . where ( self . __other_key , self . get_attribute ( self . __other_key ) )
def make_processitem_stringlist_string ( string , condition = 'contains' , negate = False , preserve_case = False ) : """Create a node for ProcessItem / StringList / string : return : A IndicatorItem represented as an Element node"""
document = 'ProcessItem' search = 'ProcessItem/StringList/string' content_type = 'string' content = string ii_node = ioc_api . make_indicatoritem_node ( condition , document , search , content_type , content , negate = negate , preserve_case = preserve_case ) return ii_node
def write_logfile ( ) : # type : ( ) - > None """Write a DEBUG log file COMMAND - YYYYMMDD - HHMMSS . fffff . log ."""
command = os . path . basename ( os . path . realpath ( os . path . abspath ( sys . argv [ 0 ] ) ) ) now = datetime . datetime . now ( ) . strftime ( '%Y%m%d-%H%M%S.%f' ) filename = '{}-{}.log' . format ( command , now ) with open ( filename , 'w' ) as logfile : if six . PY3 : logfile . write ( _LOGFILE_STR...
def split_demultiplexed_sampledata ( data , demultiplexed ) : """splits demultiplexed samples into separate entries in the global sample datadict"""
datadicts = [ ] samplename = dd . get_sample_name ( data ) for fastq in demultiplexed : barcode = os . path . basename ( fastq ) . split ( "." ) [ 0 ] datadict = copy . deepcopy ( data ) datadict = dd . set_sample_name ( datadict , samplename + "-" + barcode ) datadict = dd . set_description ( datadict ...
def arithmetic_crossover ( random , mom , dad , args ) : """Return the offspring of arithmetic crossover on the candidates . This function performs arithmetic crossover ( AX ) , which is similar to a generalized weighted averaging of the candidate elements . The allele of each parent is weighted by the * ax _...
ax_alpha = args . setdefault ( 'ax_alpha' , 0.5 ) ax_points = args . setdefault ( 'ax_points' , None ) crossover_rate = args . setdefault ( 'crossover_rate' , 1.0 ) bounder = args [ '_ec' ] . bounder children = [ ] if random . random ( ) < crossover_rate : bro = copy . copy ( dad ) sis = copy . copy ( mom ) ...
def get_token ( self , appname , username , password ) : """get the security token by connecting to TouchWorks API"""
ext_exception = TouchWorksException ( TouchWorksErrorMessages . GET_TOKEN_FAILED_ERROR ) data = { 'Username' : username , 'Password' : password } resp = self . _http_request ( TouchWorksEndPoints . GET_TOKEN , data ) try : logger . debug ( 'token : %s' % resp ) if not resp . text : raise ext_exception ...
def apply_cloud_providers_config ( overrides , defaults = None ) : '''Apply the loaded cloud providers configuration .'''
if defaults is None : defaults = PROVIDER_CONFIG_DEFAULTS config = defaults . copy ( ) if overrides : config . update ( overrides ) # Is the user still using the old format in the new configuration file ? ! for name , settings in six . iteritems ( config . copy ( ) ) : if '.' in name : log . warning...
def find ( self , pattern ) : """Searches for a pattern in the current memory segment"""
pos = self . current_segment . data . find ( pattern ) if pos == - 1 : return - 1 return pos + self . current_position
def response_helper ( self , response , ** kwargs ) : """Response component helper that allows using a marshmallow : class : ` Schema < marshmallow . Schema > ` in response definition . : param dict parameter : response fields . May contain a marshmallow Schema class or instance ."""
self . resolve_schema ( response ) if "headers" in response : for header in response [ "headers" ] . values ( ) : self . resolve_schema ( header ) return response
def _setOutputNames ( self , rootname , suffix = '_drz' ) : """Define the default output filenames for drizzle products , these are based on the original rootname of the image filename should be just 1 filename , so call this in a loop for chip names contained inside a file ."""
# Define FITS output filenames for intermediate products # Build names based on final DRIZZLE output name # where ' output ' normally would have been created # by ' process _ input ( ) ' outFinal = rootname + suffix + '.fits' outSci = rootname + suffix + '_sci.fits' outWeight = rootname + suffix + '_wht.fits' outContex...
def emit_accepted ( self ) : """Sends signal that the file dialog was closed properly . Sends : filename"""
if self . result ( ) : filename = self . selectedFiles ( ) [ 0 ] if os . path . isdir ( os . path . dirname ( filename ) ) : self . dlg_accepted . emit ( filename )
def __roman_to_cyrillic ( self , word ) : """Transliterate a Russian word back into the Cyrillic alphabet . A Russian word formerly transliterated into the Roman alphabet in order to ease the stemming process , is transliterated back into the Cyrillic alphabet , its original form . : param word : The word t...
word = ( word . replace ( "i^u" , "\u044E" ) . replace ( "i^a" , "\u044F" ) . replace ( "shch" , "\u0449" ) . replace ( "kh" , "\u0445" ) . replace ( "t^s" , "\u0446" ) . replace ( "ch" , "\u0447" ) . replace ( "e`" , "\u044D" ) . replace ( "i`" , "\u0439" ) . replace ( "sh" , "\u0448" ) . replace ( "k" , "\u043A" ) . ...
def get_grade_entry_query_session ( self ) : """Gets the ` ` OsidSession ` ` associated with the grade entry query service . return : ( osid . grading . GradeEntryQuerySession ) - a ` ` GradeEntryQuerySession ` ` raise : OperationFailed - unable to complete request raise : Unimplemented - ` ` supports _ gra...
if not self . supports_grade_entry_query ( ) : raise errors . Unimplemented ( ) # pylint : disable = no - member return sessions . GradeEntryQuerySession ( runtime = self . _runtime )
def normalize_path_in ( self , client_file_name ) : """Translate a ( possibly incomplete ) file or module name received from debugging client into an absolute file name ."""
_logger . p_debug ( "normalize_path_in(%s) with os.getcwd()=>%s" , client_file_name , os . getcwd ( ) ) # remove client CWD from file _ path if client_file_name . startswith ( self . _CLIENT_CWD ) : file_name = client_file_name [ len ( self . _CLIENT_CWD ) : ] else : file_name = client_file_name # Try to find f...
def write_string ( self ) : """Return a representation of the id map as a string . This string is properly formatted to be written in ' / etc / subuid ' or ' / etc / subgid ' ."""
map_as_str = [ ] for name , id_range_set in self . __map . items ( ) : for id_range in id_range_set : map_as_str . append ( name + ':' + str ( id_range . first ) + ':' + str ( id_range . count ) + '\n' ) # Remove trailing newline if len ( map_as_str ) > 0 : map_as_str [ - 1 ] = map_as_str [ - 1 ] [ : - ...
def set ( self , item_name , item_value ) : """Sets the value of an option in the configuration . : param str item _ name : The name of the option to set . : param item _ value : The value of the option to set ."""
if self . prefix : item_name = self . prefix + self . seperator + item_name item_names = item_name . split ( self . seperator ) item_last = item_names . pop ( ) node = self . _storage for item_name in item_names : if not item_name in node : node [ item_name ] = { } node = node [ item_name ] node [ i...
def data ( self , resource_value , return_value = False ) : """Alias for metric _ name method | HTTP Method | API Endpoint URI ' s | | POST | / v2 / customMetrics / { id } | { name } / data | Example The weight value is optional . . . code - block : : javascript " value " : 1, " weight " : 1, * * Ke...
if return_value : self . _request_entity = None self . _request . add_payload ( 'returnValue' , True ) self . _request_uri = '{}/{}/data' . format ( self . _request_uri , resource_value )
def NDLimitExceeded_originator_switch_info_switchIpV6Address ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) NDLimitExceeded = ET . SubElement ( config , "NDLimitExceeded" , xmlns = "http://brocade.com/ns/brocade-notification-stream" ) originator_switch_info = ET . SubElement ( NDLimitExceeded , "originator-switch-info" ) switchIpV6Address = ET . SubElement ( originator_switch_info , "switch...
def nonuniform_scale_samples ( params , bounds , dists ) : """Rescale samples in 0 - to - 1 range to other distributions Arguments problem : dict problem definition including bounds params : numpy . ndarray numpy array of dimensions num _ params - by - N , where N is the number of samples dists : list...
b = np . array ( bounds ) # initializing matrix for converted values conv_params = np . zeros_like ( params ) # loop over the parameters for i in range ( conv_params . shape [ 1 ] ) : # setting first and second arguments for distributions b1 = b [ i ] [ 0 ] b2 = b [ i ] [ 1 ] if dists [ i ] == 'triang' : # ...
def create_link_button ( self , text = "None" , uri = "None" ) : """Function creates a link button with corresponding text and URI reference"""
link_btn = Gtk . LinkButton ( uri , text ) return link_btn
def set_style ( rcdict , theme = None , grid = True , gridlines = u'-' , ticks = False , spines = True ) : """This code has been modified from seaborn . rcmod . set _ style ( ) : : Arguments : : rcdict ( str ) : dict of " context " properties ( filled by set _ context ( ) ) theme ( str ) : name of theme to us...
# extract style and color info for theme styleMap , clist = get_theme_style ( theme ) # extract style variables figureFace = styleMap [ 'figureFace' ] axisFace = styleMap [ 'axisFace' ] textColor = styleMap [ 'textColor' ] edgeColor = styleMap [ 'edgeColor' ] gridColor = styleMap [ 'gridColor' ] if not spines : edg...
def cmd_help ( * args ) : """Arguments : [ < command > ] List available commands"""
if len ( args ) == 0 : print ( "Possible commands are:" ) print ( "" ) for cmd_name in sorted ( COMMANDS . keys ( ) ) : cmd_func = COMMANDS [ cmd_name ] print ( "{}:" . format ( cmd_name ) ) print ( "=" * ( len ( cmd_name ) + 1 ) ) print ( " {}" . format ( cmd_func . __doc...
def from_bytes ( cls , bitstream , prefix_len = None ) : '''Look at the type of the message , instantiate the correct class and let it parse the message .'''
# Convert to ConstBitStream ( if not already provided ) if not isinstance ( bitstream , ConstBitStream ) : if isinstance ( bitstream , Bits ) : bitstream = ConstBitStream ( auto = bitstream ) else : bitstream = ConstBitStream ( bytes = bitstream ) # Skip the reserved bits rsvd1 = bitstream . rea...
def view_torrent ( self , torrent_id ) : """Retrieves and parses the torrent page for a given ` torrent _ id ` . : param torrent _ id : the ID of the torrent to view : raises TorrentNotFoundError : if the torrent does not exist : returns : a : class : ` TorrentPage ` with a snapshot view of the torrent deta...
params = { 'page' : 'view' , 'tid' : torrent_id , } r = requests . get ( self . base_url , params = params ) content = self . _get_page_content ( r ) # Check if the content div has any child elements if not len ( content ) : # The " torrent not found " text in the page has some unicode junk # that we can safely ignore ...
def delete_object ( request , model , post_delete_redirect , object_id = None , slug = None , slug_field = 'slug' , template_name = None , template_loader = loader , extra_context = None , login_required = False , context_processors = None , template_object_name = 'object' ) : """Generic object - delete function . ...
if extra_context is None : extra_context = { } if login_required and not request . user . is_authenticated : return redirect_to_login ( request . path ) obj = lookup_object ( model , object_id , slug , slug_field ) if request . method == 'POST' : obj . delete ( ) msg = ugettext ( "The %(verbose_name)s w...
def stylize ( ax , name , feature ) : '''Stylization modifications to the plots'''
ax . set_ylabel ( feature ) ax . set_title ( name , fontsize = 'small' )
def get_subs_dict ( self , qnodes = None ) : """Return substitution dict for replacements into the template Subclasses may want to customize this method ."""
# d = self . qparams . copy ( ) d = self . qparams d . update ( self . optimize_params ( qnodes = qnodes ) ) # clean null values subs_dict = { k : v for k , v in d . items ( ) if v is not None } # print ( " subs _ dict : " , subs _ dict ) return subs_dict
async def umount ( self ) : """Unmount this partition ."""
self . _data = await self . _handler . unmount ( system_id = self . block_device . node . system_id , device_id = self . block_device . id , id = self . id )
def remove_node ( self , node ) : """Removes a node and its attributes from the hypergraph . Removes every hyperedge that contains this node . : param node : reference to the node being added . : raises : ValueError - - No such node exists . Examples : > > > H = UndirectedHypergraph ( ) > > > H . add _ ...
if not self . has_node ( node ) : raise ValueError ( "No such node exists." ) # Loop over every hyperedge in the star of the node ; # i . e . , over every hyperedge that contains the node for hyperedge_id in self . _star [ node ] : frozen_nodes = self . _hyperedge_attributes [ hyperedge_id ] [ "__frozen_nodes" ...
def golden_search ( f , a , b , xatol = 1e-6 , ftol = 1e-8 , expand_bounds = False ) : """Find minimum of a function on interval [ a , b ] using golden section search . If expand _ bounds = True , expand the interval so that the function is first evaluated at x = a and x = b ."""
ratio = 2 / ( 1 + math . sqrt ( 5 ) ) if not expand_bounds : x0 = a x3 = b else : x0 = ( ratio * a - ( 1 - ratio ) * b ) / ( 2 * ratio - 1 ) x3 = ( ratio * b - ( 1 - ratio ) * a ) / ( 2 * ratio - 1 ) x1 = ratio * x0 + ( 1 - ratio ) * x3 x2 = ( 1 - ratio ) * x0 + ratio * x3 f1 = f ( x1 ) f2 = f ( x2 ) f0...
def get_sam_name ( username ) : r'''Gets the SAM name for a user . It basically prefixes a username without a backslash with the computer name . If the user does not exist , a SAM compatible name will be returned using the local hostname as the domain . i . e . salt . utils . get _ same _ name ( ' Administrat...
try : sid_obj = win32security . LookupAccountName ( None , username ) [ 0 ] except pywintypes . error : return '\\' . join ( [ platform . node ( ) [ : 15 ] . upper ( ) , username ] ) username , domain , _ = win32security . LookupAccountSid ( None , sid_obj ) return '\\' . join ( [ domain , username ] )
def get_data ( self ) : """Saves the handler ' s data for : func : ` . reloader . do _ reload `"""
data = { } data [ 'guarded' ] = self . guarded [ : ] data [ 'voiced' ] = copy . deepcopy ( self . voiced ) data [ 'opers' ] = copy . deepcopy ( self . opers ) data [ 'features' ] = self . features . copy ( ) data [ 'uptime' ] = self . uptime . copy ( ) data [ 'abuselist' ] = self . abuselist . copy ( ) data [ 'who_map'...
def run_linter ( self , linter ) -> None : """Run a checker class"""
self . current = linter . name if ( linter . name not in self . parser [ "all" ] . as_list ( "linters" ) or linter . base_pyversion > sys . version_info ) : # noqa : W503 return if any ( x not in self . installed for x in linter . requires_install ) : raise ModuleNotInstalled ( linter . requires_install ) linte...
def p_expression_lor ( self , p ) : 'expression : expression LOR expression'
p [ 0 ] = Lor ( p [ 1 ] , p [ 3 ] , lineno = p . lineno ( 1 ) ) p . set_lineno ( 0 , p . lineno ( 1 ) )
def remove_points_from_interval ( self , start , end ) : """Allow removal of all points from the time series within a interval [ start : end ] ."""
for s , e , v in self . iterperiods ( start , end ) : try : del self . _d [ s ] except KeyError : pass
def _get_stream_parameters ( kind , device , channels , dtype , latency , samplerate ) : """Generate PaStreamParameters struct ."""
if device is None : if kind == 'input' : device = _pa . Pa_GetDefaultInputDevice ( ) elif kind == 'output' : device = _pa . Pa_GetDefaultOutputDevice ( ) info = device_info ( device ) if channels is None : channels = info [ 'max_' + kind + '_channels' ] dtype = np . dtype ( dtype ) try : ...
def route ( app_or_blueprint , rule , ** options ) : """An alternative to : meth : ` flask . Flask . route ` or : meth : ` flask . Blueprint . route ` that always adds the ` ` POST ` ` method to the allowed endpoint request methods . You should use this for all your view functions that would need to use Sijax ....
def decorator ( f ) : methods = options . pop ( 'methods' , ( 'GET' , 'POST' ) ) if 'POST' not in methods : methods = tuple ( methods ) + ( 'POST' , ) options [ 'methods' ] = methods app_or_blueprint . add_url_rule ( rule , None , f , ** options ) return f return decorator
def on ( self , event , handler = None ) : """Create , add or update an event with a handler or more attached ."""
if isinstance ( event , str ) and ' ' in event : # event is list str - based self . on ( event . split ( ' ' ) , handler ) elif isinstance ( event , list ) : # many events contains same handler for each in event : self . on ( each , handler ) elif isinstance ( event , dict ) : # event is a dict of < eve...
def read_element_using_argtuple ( self , argtuple ) : """takes a tuple of keys returns node found in cfg _ dict found by traversing cfg _ dict by successive application of keys from element _ path"""
# doesn ' t support DELIMITED , only dict - based formats if self . format == FMT_DELIMITED : return None node = self . cfg_dict for key in argtuple : node = node [ key ] return node
def queued ( values , qsize ) : """Queues up readings from * values * ( the number of readings queued is determined by * qsize * ) and begins yielding values only when the queue is full . For example , to " cascade " values along a sequence of LEDs : : from gpiozero import LEDBoard , Button from gpiozero . ...
values = [ _normalize ( v ) for v in values ] if qsize < 1 : raise ValueError ( "qsize must be 1 or larger" ) q = [ ] it = iter ( values ) try : for i in range ( qsize ) : q . append ( next ( it ) ) for i in cycle ( range ( qsize ) ) : yield q [ i ] q [ i ] = next ( it ) except StopI...
def harvest_collection ( community_name ) : """Harvest a Zenodo community ' s record metadata . Examples You can harvest record metadata for a Zenodo community via its identifier name . For example , the identifier for LSST Data Management ' s Zenodo collection is ` ` ' lsst - dm ' ` ` : > > > import zeno...
url = zenodo_harvest_url ( community_name ) r = requests . get ( url ) r . status_code xml_content = r . content return Datacite3Collection . from_collection_xml ( xml_content )
def fit ( self , X , y , ** fit_params ) : """See ` ` NeuralNet . fit ` ` . In contrast to ` ` NeuralNet . fit ` ` , ` ` y ` ` is non - optional to avoid mistakenly forgetting about ` ` y ` ` . However , ` ` y ` ` can be set to ` ` None ` ` in case it is derived dynamically from"""
# pylint : disable = useless - super - delegation # this is actually a pylint bug : # https : / / github . com / PyCQA / pylint / issues / 1085 return super ( ) . fit ( X , y , ** fit_params )
def _from_any ( any_pb ) : """Convert an ` ` Any ` ` protobuf into the actual class . Uses the type URL to do the conversion . . . note : : This assumes that the type URL is already registered . : type any _ pb : : class : ` google . protobuf . any _ pb2 . Any ` : param any _ pb : An any object to be conv...
klass = _TYPE_URL_MAP [ any_pb . type_url ] return klass . FromString ( any_pb . value )
def trigger_event ( self , event , client , args , force_dispatch = False ) : """Trigger a new event that will be dispatched to all modules ."""
self . controller . process_event ( event , client , args , force_dispatch = force_dispatch )
def module2uri ( self , module_name ) : """Convert an encoded module name to an unencoded source uri"""
encoded_str = super ( EncodedModuleLoader , self ) . module2uri ( module_name ) encoded = encoded_str . encode ( 'ASCII' ) compressed = base64 . b64decode ( encoded , b'+&' ) return zlib . decompress ( compressed )
def graph_draw ( self , mode ) : """Draws grid graph using networkx This method is for debugging purposes only . Use ding0 . tools . plots . plot _ mv _ topology ( ) for advanced plotting . Parameters mode : str Mode selection ' MV ' or ' LV ' . Notes The geo coords ( for used crs see database import ...
g = self . _graph if mode == 'MV' : # get draw params from nodes and edges ( coordinates , colors , demands , etc . ) nodes_pos = { } ; demands = { } ; demands_pos = { } nodes_color = [ ] for node in g . nodes ( ) : if isinstance ( node , ( StationDing0 , LVLoadAreaCentreDing0 , CableDistrib...
def disable_beacons ( self ) : '''Enable beacons'''
self . opts [ 'beacons' ] [ 'enabled' ] = False # Fire the complete event back along with updated list of beacons evt = salt . utils . event . get_event ( 'minion' , opts = self . opts ) evt . fire_event ( { 'complete' : True , 'beacons' : self . opts [ 'beacons' ] } , tag = '/salt/minion/minion_beacons_disabled_comple...
def overlay_gateway_site_extend_vlan_add ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) overlay_gateway = ET . SubElement ( config , "overlay-gateway" , xmlns = "urn:brocade.com:mgmt:brocade-tunnels" ) name_key = ET . SubElement ( overlay_gateway , "name" ) name_key . text = kwargs . pop ( 'name' ) site = ET . SubElement ( overlay_gateway , "site" ) name_key = ET . SubEl...
def __or ( funcs , args ) : """Support list sugar for " or " of two predicates . Used inside ` select ` ."""
results = [ ] for f in funcs : result = f ( args ) if result : results . extend ( result ) return results
def get_histogram ( data ) : """Return the histogram relative to the given data Assume that the data are already sorted"""
count = len ( data ) if count < 2 : raise StatisticsError ( 'Too few data points ({}) for get_histogram' . format ( count ) ) min_ = data [ 0 ] max_ = data [ - 1 ] std = stdev ( data ) bins = get_histogram_bins ( min_ , max_ , std , count ) res = { x : 0 for x in bins } for value in data : for bin_ in bins : ...
def rpc_message_to_error ( rpc_error , request ) : """Converts a Telegram ' s RPC Error to a Python error . : param rpc _ error : the RpcError instance . : param request : the request that caused this error . : return : the RPCError as a Python exception that represents this error ."""
# Try to get the error by direct look - up , otherwise regex cls = rpc_errors_dict . get ( rpc_error . error_message , None ) if cls : return cls ( request ) for msg_regex , cls in rpc_errors_re : m = re . match ( msg_regex , rpc_error . error_message ) if m : capture = int ( m . group ( 1 ) ) if m ...
def switch_to_external_wf ( self ) : """External workflow switcher . This method copies main workflow information into a temporary dict ` main _ wf ` and makes external workflow acting as main workflow ."""
# External WF name should be stated at main wf diagram and type should be service task . if ( self . current . task_type == 'ServiceTask' and self . current . task . task_spec . type == 'external' ) : log . debug ( "Entering to EXTERNAL WF" ) # Main wf information is copied to main _ wf . main_wf = self . w...
def ensure_dir_exists ( directory ) : "Creates local directories if they don ' t exist ."
if directory . startswith ( 'gs://' ) : return if not os . path . exists ( directory ) : dbg ( "Making dir {}" . format ( directory ) ) os . makedirs ( directory , exist_ok = True )
def adjustReplicas ( self , old_required_number_of_instances : int , new_required_number_of_instances : int ) : """Add or remove replicas depending on ` f `"""
# TODO : refactor this replica_num = old_required_number_of_instances while replica_num < new_required_number_of_instances : self . replicas . add_replica ( replica_num ) self . processStashedMsgsForReplica ( replica_num ) replica_num += 1 while replica_num > new_required_number_of_instances : replica_n...
def get_args ( self , state , all_params , remainder , argspec , im_self ) : '''Determines the arguments for a controller based upon parameters passed the argument specification for the controller .'''
args = [ ] varargs = [ ] kwargs = dict ( ) valid_args = argspec . args [ : ] if ismethod ( state . controller ) or im_self : valid_args . pop ( 0 ) # pop off ` self ` pecan_state = state . request . pecan remainder = [ x for x in remainder if x ] if im_self is not None : args . append ( im_self ) # grab the...
def _cmd_line_parser ( ) : '''return a command line parser . It is used when generating the documentation'''
parser = argparse . ArgumentParser ( ) parser . add_argument ( '--path' , help = ( 'path to test files, ' 'if not provided the script folder is used' ) ) parser . add_argument ( '--text_output' , action = 'store_true' , help = 'option to save the results to text file' ) parser . add_argument ( '--format' , default = 'r...
def validate_key ( request , group = None , perm = None , keytype = None ) : """Validate the given key"""
def update_last_access ( ) : if KEY_LAST_USED_UPDATE : request . key . save ( ) if request . user . is_authenticated ( ) and is_valid_consumer ( request ) : if not group and not perm and not keytype : return update_last_access ( ) elif keytype : if request . key . is_type ( keytype )...
async def _watch ( self ) : """Start the watching loop ."""
file_name = os . path . basename ( self . _file_path ) logger . info ( 'Watching %s "%s"' , self . THING , self . _file_path , ) while self . _running : evt = await self . _watcher . get_event ( ) if evt . name == file_name : await self . _load ( ) logger . info ( 'Reloading changed %s from "%s"...
async def connect ( self ) : """Connects to Telegram ."""
await self . _sender . connect ( self . _connection ( self . session . server_address , self . session . port , self . session . dc_id , loop = self . _loop , loggers = self . _log , proxy = self . _proxy ) ) self . session . auth_key = self . _sender . auth_key self . session . save ( ) await self . _sender . send ( s...
def parse_dsn ( dsn_string ) : """Parse a connection string and return the associated driver"""
dsn = urlparse ( dsn_string ) scheme = dsn . scheme . split ( '+' ) [ 0 ] username = password = host = port = None host = dsn . netloc if '@' in host : username , host = host . split ( '@' ) if ':' in username : username , password = username . split ( ':' ) password = unquote ( password ) u...
def save_to ( self , nameprefix , switch = False ) : """saves logger data to a different set of files , for ` ` switch = True ` ` also the loggers name prefix is switched to the new value"""
if not nameprefix or not isinstance ( nameprefix , basestring ) : raise _Error ( 'filename prefix must be a nonempty string' ) if nameprefix == self . default_prefix : raise _Error ( 'cannot save to default name "' + nameprefix + '...", chose another name' ) if nameprefix == self . name_prefix : return for ...
def list_directory ( self , * args , ** kwargs ) : """: meth : ` . WNetworkClientProto . list _ directory ` method implementation"""
return tuple ( self . dav_client ( ) . list ( self . session_path ( ) ) )
def _get_file_event_handler ( self , file_path , save_name ) : """Get or create an event handler for a particular file . file _ path : the file ' s actual path save _ name : its path relative to the run directory ( aka the watch directory )"""
self . _file_pusher . update_file ( save_name , file_path ) # track upload progress if save_name not in self . _file_event_handlers : if save_name == 'wandb-history.jsonl' : self . _file_event_handlers [ 'wandb-history.jsonl' ] = FileEventHandlerTextStream ( file_path , 'wandb-history.jsonl' , self . _api )...
def list_staged_files ( self ) -> typing . List [ str ] : """: return : staged files : rtype : list of str"""
staged_files : typing . List [ str ] = [ x . a_path for x in self . repo . index . diff ( 'HEAD' ) ] LOGGER . debug ( 'staged files: %s' , staged_files ) return staged_files
def _generic_summary ( arg , exact_nunique = False , prefix = None ) : """Compute a set of summary metrics from the input value expression Parameters arg : value expression exact _ nunique : boolean , default False Compute the exact number of distinct values ( slower ) prefix : string , default None Str...
metrics = [ arg . count ( ) , arg . isnull ( ) . sum ( ) . name ( 'nulls' ) ] if exact_nunique : unique_metric = arg . nunique ( ) . name ( 'uniques' ) else : unique_metric = arg . approx_nunique ( ) . name ( 'uniques' ) metrics . append ( unique_metric ) return _wrap_summary_metrics ( metrics , prefix )
def video_get_size ( self , num = 0 ) : """Get the video size in pixels as 2 - tuple ( width , height ) . @ param num : video number ( default 0 ) ."""
r = libvlc_video_get_size ( self , num ) if isinstance ( r , tuple ) and len ( r ) == 2 : return r else : raise VLCException ( 'invalid video number (%s)' % ( num , ) )
def kube_pod_status_phase ( self , metric , scraper_config ) : """Phase a pod is in ."""
metric_name = scraper_config [ 'namespace' ] + '.pod.status_phase' status_phase_counter = Counter ( ) for sample in metric . samples : # Counts aggregated cluster - wide to avoid no - data issues on pod churn , # pod granularity available in the service checks tags = [ self . _label_to_tag ( 'namespace' , sample [ ...
def get_model ( self ) : """Get a model if the formula was previously satisfied ."""
if self . lingeling and self . status == True : model = pysolvers . lingeling_model ( self . lingeling ) return model if model != None else [ ]
def _hexplot ( matrix , fig , colormap ) : """Internal function to plot a hexagonal map ."""
umatrix_min = matrix . min ( ) umatrix_max = matrix . max ( ) n_rows , n_columns = matrix . shape cmap = plt . get_cmap ( colormap ) offsets = np . zeros ( ( n_columns * n_rows , 2 ) ) facecolors = [ ] for row in range ( n_rows ) : for col in range ( n_columns ) : if row % 2 == 0 : offsets [ row...
def _iflat_tasks_wti ( self , status = None , op = "==" , nids = None , with_wti = True ) : """Generators that produces a flat sequence of task . if status is not None , only the tasks with the specified status are selected . nids is an optional list of node identifiers used to filter the tasks . Returns : ...
nids = as_set ( nids ) if status is None : for wi , work in enumerate ( self ) : for ti , task in enumerate ( work ) : if nids and task . node_id not in nids : continue if with_wti : yield task , wi , ti else : yield task el...
def _call_marginalizevperp ( self , o , integrate_method = 'dopr54_c' , ** kwargs ) : """Call the DF , marginalizing over perpendicular velocity"""
# Get d , l , vlos l = o . ll ( obs = [ 1. , 0. , 0. ] , ro = 1. ) * _DEGTORAD vlos = o . vlos ( ro = 1. , vo = 1. , obs = [ 1. , 0. , 0. , 0. , 0. , 0. ] ) R = o . R ( use_physical = False ) phi = o . phi ( use_physical = False ) # Get local circular velocity , projected onto the los if isinstance ( self . _pot , list...
def _data ( self ) : """Cached data built from instance raw _ values as a dictionary ."""
d = { } # Iterate all keys and values for k , v in self . _row_values . items ( ) : # Split related model fields attrs = k . rsplit ( '__' , 1 ) # Set value depending case if len ( attrs ) == 2 : # Related model field , store nested fk , fn = attrs if fk not in d : d [ fk ] = { }...
def model ( self , * args , ** kwargs ) : # type : ( * Any , * * Any ) - > Part """Retrieve single KE - chain part model . Uses the same interface as the : func : ` part ` method but returns only a single pykechain : class : ` models . Part ` instance of category ` MODEL ` . If additional ` keyword = value ` ...
kwargs [ 'category' ] = Category . MODEL _parts = self . parts ( * args , ** kwargs ) if len ( _parts ) == 0 : raise NotFoundError ( "No model fits criteria" ) if len ( _parts ) != 1 : raise MultipleFoundError ( "Multiple models fit criteria" ) return _parts [ 0 ]
def write_dag ( self , out = sys . stdout ) : """Write info for all GO Terms in obo file , sorted numerically ."""
for rec in sorted ( self . values ( ) ) : print ( rec , file = out )
def assets2s3 ( ) : """Upload assets files to S3"""
import flask_s3 header ( "Assets2S3..." ) print ( "" ) print ( "Building assets files..." ) print ( "" ) build_assets ( application . app ) print ( "" ) print ( "Uploading assets files to S3 ..." ) flask_s3 . create_all ( application . app ) print ( "" )
def kernels ( gandi , vm , datacenter , flavor , match ) : """List available kernels ."""
if vm : vm = gandi . iaas . info ( vm ) dc_list = gandi . datacenter . filtered_list ( datacenter , vm ) for num , dc in enumerate ( dc_list ) : if num : gandi . echo ( '\n' ) output_datacenter ( gandi , dc , [ 'dc_name' ] ) kmap = gandi . kernel . list ( dc [ 'id' ] , flavor , match ) for _...
def cell_has_code ( lines ) : """Is there any code in this cell ?"""
for i , line in enumerate ( lines ) : stripped_line = line . strip ( ) if stripped_line . startswith ( '#' ) : continue # Two consecutive blank lines ? if not stripped_line : if i > 0 and not lines [ i - 1 ] . strip ( ) : return False continue return True return F...
def RegisterMessageHandler ( self , handler , lease_time , limit = 1000 ) : """Leases a number of message handler requests up to the indicated limit ."""
self . UnregisterMessageHandler ( ) self . handler_stop = False self . handler_thread = threading . Thread ( name = "message_handler" , target = self . _MessageHandlerLoop , args = ( handler , lease_time , limit ) ) self . handler_thread . daemon = True self . handler_thread . start ( )
def restart_on_change_helper ( lambda_f , restart_map , stopstart = False , restart_functions = None ) : """Helper function to perform the restart _ on _ change function . This is provided for decorators to restart services if files described in the restart _ map have changed after an invocation of lambda _ f (...
if restart_functions is None : restart_functions = { } checksums = { path : path_hash ( path ) for path in restart_map } r = lambda_f ( ) # create a list of lists of the services to restart restarts = [ restart_map [ path ] for path in restart_map if path_hash ( path ) != checksums [ path ] ] # create a flat list o...
def verify ( self , otp , for_time = None , valid_window = 0 ) : """Verifies the OTP passed in against the current time OTP @ param [ String / Integer ] otp the OTP to check against @ param [ Integer ] valid _ window extends the validity to this many counter ticks before and after the current one"""
if for_time is None : for_time = datetime . datetime . now ( ) if valid_window : for i in range ( - valid_window , valid_window + 1 ) : if utils . strings_equal ( str ( otp ) , str ( self . at ( for_time , i ) ) ) : return True return False return utils . strings_equal ( str ( otp ) , st...
def get_service_list ( self ) -> list : """Get a list of docker services . Only the manager nodes can retrieve all the services Returns : list , all the ids of the services in swarm"""
# Initialising empty list services = [ ] # Raise an exception if we are not a manager if not self . _manager : raise RuntimeError ( 'Only the Swarm manager node can retrieve' ' all the services.' ) service_list = self . _client . services . list ( ) for s_list in service_list : services . append ( s_list . shor...
def create_figures ( n , * fig_args , ** fig_kwargs ) : '''Create multiple figures . Args and Kwargs are passed to ` matplotlib . figure . Figure ` . This routine is provided in order to avoid usage of pyplot which is stateful and not thread safe . As drawing routines in tf - matplotlib are called from py -...
return [ create_figure ( * fig_args , ** fig_kwargs ) for _ in range ( n ) ]
def push ( self , x ) : """append items to the stack ; input can be a single value or a list"""
if isinstance ( x , list ) : for item in x : self . stack . append ( item ) else : self . stack . append ( x )
def DocbookSlidesPdf ( env , target , source = None , * args , ** kw ) : """A pseudo - Builder , providing a Docbook toolchain for PDF slides output ."""
# Init list of targets / sources target , source = __extend_targets_sources ( target , source ) # Init XSL stylesheet __init_xsl_stylesheet ( kw , env , '$DOCBOOK_DEFAULT_XSL_SLIDESPDF' , [ 'slides' , 'fo' , 'plain.xsl' ] ) # Setup builder __builder = __select_builder ( __lxml_builder , __libxml2_builder , __xsltproc_b...
def listen ( self ) : """Instructs handler to listen to Django request and handle CategoryList editor requests ( if any ) . : return : None on success otherwise and exception from SitecatsException family is raised ."""
requested_action = self . _request . POST . get ( 'category_action' , False ) if not requested_action : return None # No action supplied . Pass . if requested_action not in self . KNOWN_ACTIONS : raise SitecatsSecurityException ( 'Unknown `category_action` - `%s` - requested.' ) category_base_id = self . _reque...
def findlinestarts ( code , dup_lines = False ) : """Find the offsets in a byte code which are start of lines in the source . Generate pairs ( offset , lineno ) as described in Python / compile . c ."""
if PYTHON3 : byte_increments = code . co_lnotab [ 0 : : 2 ] line_increments = code . co_lnotab [ 1 : : 2 ] else : byte_increments = [ ord ( c ) for c in code . co_lnotab [ 0 : : 2 ] ] line_increments = [ ord ( c ) for c in code . co_lnotab [ 1 : : 2 ] ] lastlineno = None lineno = code . co_firstlineno a...
def roundvals ( self , col : str , precision : int = 2 ) : """Round floats in a column . Numbers are going to be converted to floats if they are not already : param col : column name : type col : str : param precision : float precision , defaults to 2 : param precision : int , optional : example : ` ` d...
try : self . df [ col ] = self . df [ col ] . astype ( "float64" ) self . df [ col ] = self . df [ col ] . apply ( lambda x : round ( x , precision ) ) except Exception as e : self . err ( e , "Can not round column values" ) return self . ok ( "Rounded values in column " + col )
def initialize ( template , service_name , environment = 'dev' ) : """Adds SERVICE _ NAME , SERVICE _ ENVIRONMENT , and DEFAULT _ TAGS to the template : param template : : param service _ name : : param environment : : return :"""
template . SERVICE_NAME = os . getenv ( 'SERVICE_NAME' , service_name ) template . SERVICE_ENVIRONMENT = os . getenv ( 'ENV' , environment ) . lower ( ) template . DEFAULT_TAGS = troposphere . Tags ( ** { 'service-name' : template . SERVICE_NAME , 'environment' : template . SERVICE_ENVIRONMENT } ) template . add_versio...
def setAutoRangeOff ( self ) : """Turns off the auto range checkbox . Calls _ refreshNodeFromTarget , not _ updateTargetFromNode , because setting auto range off does not require a redraw of the target ."""
# TODO : catch exceptions . How ? # / argos / hdf - eos / DeepBlue - SeaWiFS - 1.0 _ L3_20100101 _ v002-20110527T191319Z . h5 / aerosol _ optical _ thickness _ stddev _ ocean if self . getRefreshBlocked ( ) : logger . debug ( "setAutoRangeOff blocked for {}" . format ( self . nodeName ) ) return if self . autoR...
def add_error ( self , error , critical = False ) : """Adds an error to the state . Args : error : The text that will be added to the error list . critical : If set to True and the error is checked with check _ errors , will dfTimewolf will abort ."""
self . errors . append ( ( error , critical ) )
def go_to_line ( self , line ) : """Moves the text cursor to given line . : param line : Line to go to . : type line : int : return : Method success . : rtype : bool"""
cursor = self . textCursor ( ) cursor . setPosition ( self . document ( ) . findBlockByNumber ( line - 1 ) . position ( ) ) self . setTextCursor ( cursor ) return True
def read_args ( ** kwargs ) : """Read controlfile parameter ."""
if kwargs . get ( "control" ) : args = Namespace ( control = kwargs [ "control" ] ) elif config . CONTROLFILE : args = Namespace ( control = config . CONTROLFILE ) elif config . DB . get ( "control_table_name" ) : args = Namespace ( control = "sql" ) elif config . AWS . get ( "control_table_name" ) : ar...
def infer_ast_from_something ( self , obj , context = None ) : """infer astroid for the given class"""
if hasattr ( obj , "__class__" ) and not isinstance ( obj , type ) : klass = obj . __class__ else : klass = obj try : modname = klass . __module__ except AttributeError as exc : raise exceptions . AstroidBuildingError ( "Unable to get module for {class_repr}." , cls = klass , class_repr = safe_repr ( kl...
def read_uic_tag ( fh , tagid , planecount , offset ) : """Read a single UIC tag value from file and return tag name and value . UIC1Tags use an offset ."""
def read_int ( count = 1 ) : value = struct . unpack ( '<%iI' % count , fh . read ( 4 * count ) ) return value [ 0 ] if count == 1 else value try : name , dtype = TIFF . UIC_TAGS [ tagid ] except IndexError : # unknown tag return '_TagId%i' % tagid , read_int ( ) Fraction = TIFF . UIC_TAGS [ 4 ] [ 1 ] i...
def handle_program_options ( ) : """Parses the given options passed in at the command line ."""
parser = argparse . ArgumentParser ( description = "Calculate the alpha diversity\ of a set of samples using one or more \ metrics and output a kernal density \ estimator-smoothed histogram of the \ ...
def update_dispute ( self , idempotency_key = None , ** params ) : """Return a deferred ."""
url = self . instance_url ( ) + '/dispute' headers = populate_headers ( idempotency_key ) d = self . request ( 'post' , url , params , headers ) d . addCallback ( lambda response : self . refresh_from ( { 'dispute' : response } , api_key , True ) ) return d . addCallback ( lambda _ : self . dispute )