signature stringlengths 29 44.1k | implementation stringlengths 0 85.2k |
|---|---|
def get ( self , key , value ) :
"""Retrieve single group record by id or name
Supports resource cache
Keyword Args :
id ( str ) : Full Group ID
name ( str ) : Group name
Raises :
TypeError : Unexpected or more than one keyword argument provided
ValueError : No matching group found based on provided i... | if key == 'id' :
response = self . _swimlane . request ( 'get' , 'groups/{}' . format ( value ) )
return Group ( self . _swimlane , response . json ( ) )
else :
response = self . _swimlane . request ( 'get' , 'groups/lookup?name={}' . format ( value ) )
matched_groups = response . json ( )
for group... |
def submit ( args = None ) :
"""Performs the submit according to arguments and
returns an object describing the result .""" | streamsx . _streams . _version . _mismatch_check ( 'streamsx.topology.context' )
cmd_args = _parse_args ( args )
if cmd_args . topology is not None :
app = _get_topology_app ( cmd_args )
elif cmd_args . main_composite is not None :
app = _get_spl_app ( cmd_args )
elif cmd_args . bundle is not None :
app = _... |
def generate_intersect_subparser ( subparsers ) :
"""Adds a sub - command parser to ` subparsers ` to make an
intersection query .""" | parser = subparsers . add_parser ( 'intersect' , description = constants . INTERSECT_DESCRIPTION , epilog = constants . INTERSECT_EPILOG , formatter_class = ParagraphFormatter , help = constants . INTERSECT_HELP )
parser . set_defaults ( func = ngram_intersection )
utils . add_common_arguments ( parser )
utils . add_db... |
def poll_parser ( poll ) :
"""Parses a poll object""" | if __is_deleted ( poll ) :
return deleted_parser ( poll )
if poll [ 'type' ] not in poll_types :
raise Exception ( 'Not a poll type' )
return Poll ( poll [ 'id' ] , poll [ 'by' ] , __check_key ( 'kids' , poll ) , # poll and pollopt differ this property
__check_key ( 'parts' , poll ) , # poll and pollopt differ ... |
def get_biome_color_based_on_elevation ( world , elev , x , y , rng ) :
'''This is the " business logic " for determining the base biome color in satellite view .
This includes generating some " noise " at each spot in a pixel ' s rgb value , potentially
modifying the noise based on elevation , and finally inco... | v = world . biome_at ( ( x , y ) ) . name ( )
biome_color = _biome_satellite_colors [ v ]
# Default is no noise - will be overwritten if this tile is land
noise = ( 0 , 0 , 0 )
if world . is_land ( ( x , y ) ) : # # Generate some random noise to apply to this pixel
# There is noise for each element of the rgb value
# T... |
def load_builtin_plugins ( ) -> int :
"""Load built - in plugins distributed along with " nonebot " package .""" | plugin_dir = os . path . join ( os . path . dirname ( __file__ ) , 'plugins' )
return load_plugins ( plugin_dir , 'nonebot.plugins' ) |
def settings ( ** kwargs ) :
"""apply given PyEMMA config values temporarily within the given context .""" | from pyemma import config
old_settings = { }
try : # remember old setting , set new one . May raise ValueError , if invalid setting is given .
for k , v in kwargs . items ( ) :
old_settings [ k ] = getattr ( config , k )
setattr ( config , k , v )
yield
finally : # restore old settings
for k... |
def update ( self , id , name = None , parent_id = None , order = None ) :
"""更新部门
https : / / work . weixin . qq . com / api / doc # 90000/90135/90206
: param id : 部门 id
: param name : 部门名称 。 长度限制为1 ~ 32个字符 , 字符不能包括 \\ : ? ” < > |
: param parent _ id : 父亲部门id
: param order : 在父部门中的次序值 。 order值大的排序靠前 。 有效... | data = optionaldict ( id = id , name = name , parentid = parent_id , order = order )
return self . _post ( 'department/update' , data = data ) |
def _merge_wf_inputs ( new , out , wf_outputs , to_ignore , parallel , nested_inputs ) :
"""Merge inputs for a sub - workflow , adding any not present inputs in out .
Skips inputs that are internally generated or generated and ignored , keeping
only as inputs those that we do not generate internally .""" | internal_generated_ids = [ ]
for vignore in to_ignore :
vignore_id = _get_string_vid ( vignore )
# ignore anything we generate internally , but not those we need to pull in
# from the external process
if vignore_id not in [ v [ "id" ] for v in wf_outputs ] :
internal_generated_ids . append ( vig... |
def dfs_grid ( grid , i , j , mark = 'X' , free = '.' ) :
"""DFS on a grid , mark connected component , iterative version
: param grid : matrix , 4 - neighborhood
: param i , j : cell in this matrix , start of DFS exploration
: param free : symbol for walkable cells
: param mark : symbol to overwrite visite... | height = len ( grid )
width = len ( grid [ 0 ] )
to_visit = [ ( i , j ) ]
grid [ i ] [ j ] = mark
while to_visit :
i1 , j1 = to_visit . pop ( )
for i2 , j2 in [ ( i1 + 1 , j1 ) , ( i1 , j1 + 1 ) , ( i1 - 1 , j1 ) , ( i1 , j1 - 1 ) ] :
if ( 0 <= i2 < height and 0 <= j2 < width and grid [ i2 ] [ j2 ] == f... |
def _local_browser_class ( browser_name ) :
"""Returns class , kwargs , and args needed to instantiate the local browser .""" | # Log name of local browser
LOGGER . info ( u"Using local browser: %s [Default is firefox]" , browser_name )
# Get class of local browser based on name
browser_class = BROWSERS . get ( browser_name )
headless = os . environ . get ( 'BOKCHOY_HEADLESS' , 'false' ) . lower ( ) == 'true'
if browser_class is None :
rais... |
def bss_eval_sources ( reference_sources , estimated_sources , compute_permutation = True ) :
"""Ordering and measurement of the separation quality for estimated source
signals in terms of filtered true source , interference and artifacts .
The decomposition allows a time - invariant filter distortion of length... | # make sure the input is of shape ( nsrc , nsampl )
if estimated_sources . ndim == 1 :
estimated_sources = estimated_sources [ np . newaxis , : ]
if reference_sources . ndim == 1 :
reference_sources = reference_sources [ np . newaxis , : ]
validate ( reference_sources , estimated_sources )
# If empty matrices w... |
def get_ZXY_data_IFFT ( Data , zf , xf , yf , zwidth = 10000 , xwidth = 5000 , ywidth = 5000 , timeStart = None , timeEnd = None , show_fig = True ) :
"""Given a Data object and the frequencies of the z , x and y peaks ( and some
optional parameters for the created filters ) this function extracts the
individua... | if timeStart == None :
timeStart = Data . timeStart
if timeEnd == None :
timeEnd = Data . timeEnd
time = Data . time . get_array ( )
StartIndex = _np . where ( time == take_closest ( time , timeStart ) ) [ 0 ] [ 0 ]
EndIndex = _np . where ( time == take_closest ( time , timeEnd ) ) [ 0 ] [ 0 ]
SAMPLEFREQ = Data... |
def sync ( self , api_token , sync_token , resource_types = '["all"]' , ** kwargs ) :
"""Update and retrieve Todoist data .
: param api _ token : The user ' s login api _ token .
: type api _ token : str
: param seq _ no : The request sequence number . On initial request pass
` ` 0 ` ` . On all others pass ... | params = { 'token' : api_token , 'sync_token' : sync_token , }
req_func = self . _post
if 'commands' not in kwargs : # GET if we ' re not changing data .
req_func = self . _get
params [ 'resource_types' ] = resource_types
return req_func ( 'sync' , params , ** kwargs ) |
def create_directory ( directory ) :
"""Create directory but first delete it if it exists""" | if os . path . exists ( directory ) :
rmtree ( directory )
os . makedirs ( directory )
return directory |
def get_user_client ( self , user , password , populate = True ) :
"""Returns a new client for the given user . This is a lightweight
client that only uses different credentials and shares the transport
with the underlying client""" | return XCLIClientForUser ( weakproxy ( self ) , user , password , populate = populate ) |
def default_inasafe_html_resources ( feature , parent ) :
"""Retrieve default InaSAFE HTML resources ( style and script ) .""" | _ = feature , parent
# NOQA
project_context_scope = QgsExpressionContextUtils . projectScope ( )
key = provenance_layer_analysis_impacted [ 'provenance_key' ]
if not project_context_scope . hasVariable ( key ) :
return None
analysis_dir = dirname ( project_context_scope . variable ( key ) )
complete_html_report = g... |
def inc ( self , exception = None ) : # type : ( Optional [ ParseError . _ _ class _ _ ] ) - > bool
"""Increments the parser if the end of the input has not been reached .
Returns whether or not it was able to advance .""" | try :
self . _idx , self . _current = next ( self . _chars )
return True
except StopIteration :
self . _idx = len ( self )
self . _current = self . EOF
if exception :
raise self . parse_error ( exception )
return False |
def getClassAllSubs ( self , aURI ) :
"""note : requires SPARQL 1.1
2015-06-04 : currenlty not used , inferred from above""" | aURI = aURI
try :
qres = self . rdfgraph . query ( """SELECT DISTINCT ?x
WHERE {
{ ?x rdfs:subClassOf+ <%s> }
FILTER (!isBlank(?x))
}
""" % ( aURI ) )
except :
printDebug ( "... warning: the 'getClas... |
def _load_instance ( self , instance_id ) :
"""Return instance with the given id .
For performance reasons , the instance ID is first searched for in the
collection of VM instances started by ElastiCluster
( ` self . _ instances ` ) , then in the list of all instances known to the
cloud provider at the time... | # if instance is known , return it
if instance_id in self . _instances :
return self . _instances [ instance_id ]
# else , check ( cached ) list from provider
if instance_id not in self . _cached_instances :
self . _cached_instances = self . _build_cached_instances ( )
if instance_id in self . _cached_instances... |
def VerifyStructure ( self , parser_mediator , line ) :
"""Verify that this file is a Mac Wifi log file .
Args :
parser _ mediator ( ParserMediator ) : mediates interactions between parsers
and other components , such as storage and dfvfs .
line ( str ) : line from a text file .
Returns :
bool : True if... | self . _last_month = 0
self . _year_use = parser_mediator . GetEstimatedYear ( )
key = 'header'
try :
structure = self . _MAC_WIFI_HEADER . parseString ( line )
except pyparsing . ParseException :
structure = None
if not structure :
key = 'turned_over_header'
try :
structure = self . _MAC_WIFI_T... |
def from_jd ( jd ) :
'''Calculate Indian Civil date from Julian day
Offset in years from Saka era to Gregorian epoch''' | start = 80
# Day offset between Saka and Gregorian
jd = trunc ( jd ) + 0.5
greg = gregorian . from_jd ( jd )
# Gregorian date for Julian day
leap = isleap ( greg [ 0 ] )
# Is this a leap year ?
# Tentative year in Saka era
year = greg [ 0 ] - SAKA_EPOCH
# JD at start of Gregorian year
greg0 = gregorian . to_jd ( greg [... |
def cmp_pkgrevno ( package , revno , pkgcache = None ) :
"""Compare supplied revno with the revno of the installed package .
* 1 = > Installed revno is greater than supplied arg
* 0 = > Installed revno is the same as supplied arg
* - 1 = > Installed revno is less than supplied arg
This function imports YumB... | if not pkgcache :
y = yum . YumBase ( )
packages = y . doPackageLists ( )
pkgcache = { i . Name : i . version for i in packages [ 'installed' ] }
pkg = pkgcache [ package ]
if pkg > revno :
return 1
if pkg < revno :
return - 1
return 0 |
def checked ( response ) :
"""Check a response status before returning it .
: param response : a response from a XMLRPC call to OpenSubtitles .
: return : the response .
: raise : : class : ` OpenSubtitlesError `""" | status_code = int ( response [ 'status' ] [ : 3 ] )
if status_code == 401 :
raise Unauthorized
if status_code == 406 :
raise NoSession
if status_code == 407 :
raise DownloadLimitReached
if status_code == 413 :
raise InvalidImdbid
if status_code == 414 :
raise UnknownUserAgent
if status_code == 415 :... |
def _strip_comments ( line ) :
"""Processes line stripping any comments from it
: param line : line to be processed
: type line : str
: return : line with removed comments
: rtype : str""" | if line == '' :
return line
r = re . search ( '(?P<line>[^#]*)(#(?P<comment>.*))?' , line )
if r :
line = r . group ( 'line' )
if not line . endswith ( '\n' ) :
line += '\n'
return line
return '\n' |
def metta_config ( quarter , num_dimensions ) :
"""Returns metta metadata for a quarter ' s SOC code classifier matrix
Args :
quarter ( str ) quarter , in format ' 2015Q1'
num _ dimensions ( int ) Number of features in matrix
Returns : ( dict ) metadata suitable for metta . archive _ train _ test""" | first_day , last_day = quarter_boundaries ( quarter )
return { 'start_time' : first_day , 'end_time' : last_day , 'prediction_window' : 3 , 'label_name' : 'onet_soc_code' , 'label_type' : 'categorical' , 'matrix_id' : 'job_postings_{}' . format ( quarter ) , 'feature_names' : [ 'doc2vec_{}' . format ( i ) for i in rang... |
def doCommit ( self , p : Prepare ) :
"""Create a commit message from the given Prepare message and trigger the
commit phase
: param p : the prepare message""" | key_3pc = ( p . viewNo , p . ppSeqNo )
self . logger . debug ( "{} Sending COMMIT{} at {}" . format ( self , key_3pc , self . get_current_time ( ) ) )
params = [ self . instId , p . viewNo , p . ppSeqNo ]
pre_prepare = self . getPrePrepare ( * key_3pc )
# BLS multi - sig :
if p . stateRootHash is not None :
pre_pre... |
def reset_password ( app , appbuilder , username , password ) :
"""Resets a user ' s password""" | _appbuilder = import_application ( app , appbuilder )
user = _appbuilder . sm . find_user ( username = username )
if not user :
click . echo ( "User {0} not found." . format ( username ) )
else :
_appbuilder . sm . reset_password ( user . id , password )
click . echo ( click . style ( "User {0} reseted." . ... |
def name ( self ) :
"""Get the module name
: return : Module name
: rtype : str | unicode""" | res = type ( self ) . __name__
if self . _id :
res += ".{}" . format ( self . _id )
return res |
def build_ap_info_pkt ( self , layer_cls , dest ) :
"""Build a packet with info describing the current AP
For beacon / proberesp use""" | return RadioTap ( ) / Dot11 ( addr1 = dest , addr2 = self . mac , addr3 = self . mac ) / layer_cls ( timestamp = 0 , beacon_interval = 100 , cap = 'ESS+privacy' ) / Dot11Elt ( ID = "SSID" , info = self . ssid ) / Dot11EltRates ( rates = [ 130 , 132 , 139 , 150 , 12 , 18 , 24 , 36 ] ) / Dot11Elt ( ID = "DSset" , info = ... |
def add_row ( self , label , row_data , columns = "" ) :
"""Add a row with data .
If any new keys are present in row _ data dictionary ,
that column will be added to the dataframe .
This is done inplace""" | # use provided column order , making sure you don ' t lose any values
# from self . df . columns
if len ( columns ) :
if sorted ( self . df . columns ) == sorted ( columns ) :
self . df . columns = columns
else :
new_columns = [ ]
new_columns . extend ( columns )
for col in self ... |
def call_and_catch_errors ( self , f , * args , ** kwargs ) :
"""Call the given function with the given arguments . If it succeeds ,
return its return value . If it raises a : class : ` scss . errors . SassError `
and ` live _ errors ` is turned on , return CSS containing a traceback and
error message .""" | try :
return f ( * args , ** kwargs )
except SassError as e :
if self . live_errors : # TODO should this setting also capture and display warnings ?
return e . to_css ( )
else :
raise |
def batch_norm_relu ( inputs , is_training , relu = True ) :
"""Block of batch norm and relu .""" | inputs = mtf . layers . batch_norm ( inputs , is_training , BATCH_NORM_DECAY , epsilon = BATCH_NORM_EPSILON , init_zero = ( not relu ) )
if relu :
inputs = mtf . relu ( inputs )
return inputs |
def open_gif ( self , filename ) :
"""Open a gif file .
Parameters
filename : str
Filename of the gif to open . Filename must end in gif .""" | if filename [ - 3 : ] != 'gif' :
raise Exception ( 'Unsupported filetype. Must end in .gif' )
if isinstance ( vtki . FIGURE_PATH , str ) and not os . path . isabs ( filename ) :
filename = os . path . join ( vtki . FIGURE_PATH , filename )
self . _gif_filename = os . path . abspath ( filename )
self . mwriter ... |
def find_tags ( self ) :
"""Find information about the tags in the repository .
. . note : : The ` ` bzr tags ` ` command reports tags pointing to
non - existing revisions as ` ` ? ` ` but doesn ' t provide revision
ids . We can get the revision ids using the ` ` bzr tags
- - show - ids ` ` command but this... | valid_tags = [ ]
listing = self . context . capture ( 'bzr' , 'tags' )
for line in listing . splitlines ( ) :
tokens = line . split ( )
if len ( tokens ) == 2 and tokens [ 1 ] != '?' :
valid_tags . append ( tokens [ 0 ] )
listing = self . context . capture ( 'bzr' , 'tags' , '--show-ids' )
for line in l... |
def experiments_fmri_create ( self , experiment_id , filename ) :
"""Create functional data object from given file and associate the
object with the specified experiment .
Parameters
experiment _ id : string
Unique experiment identifier
filename : File - type object
Functional data file
Returns
FMRI... | # Get the experiment to ensure that it exist before we even create the
# functional data object
experiment = self . experiments_get ( experiment_id )
if experiment is None :
return None
# Create functional data object from given file
fmri = self . funcdata . create_object ( filename )
# Update experiment to associa... |
def import_keybase ( useropt ) :
"""Imports a public GPG key from Keybase""" | public_key = None
u_bits = useropt . split ( ':' )
username = u_bits [ 0 ]
if len ( u_bits ) == 1 :
public_key = cryptorito . key_from_keybase ( username )
else :
fingerprint = u_bits [ 1 ]
public_key = cryptorito . key_from_keybase ( username , fingerprint )
if cryptorito . has_gpg_key ( public_key [ 'fing... |
def flipVertical ( self ) :
"""flips an image object vertically""" | self . flipV = not self . flipV
self . _transmogrophy ( self . angle , self . percent , self . scaleFromCenter , self . flipH , self . flipV ) |
def pressure_integral ( T1 , P1 , dH ) :
r'''Method to compute an integral of the pressure differential of an
elevation difference with a base elevation defined by temperature ` T1 `
and pressure ` P1 ` . This is
similar to subtracting the pressures at two different elevations ,
except it allows for local c... | # Compute the elevation to obtain the pressure specified
def to_solve ( H ) :
return ATMOSPHERE_1976 ( H ) . P - P1
H_ref = brenth ( to_solve , - 610.0 , 86000 )
# Compute the temperature delta
dT = T1 - ATMOSPHERE_1976 ( H_ref ) . T
def to_int ( Z ) :
atm = ATMOSPHERE_1976 ( Z , dT = dT )
return atm . g * ... |
def histogram_bin_edges_mincount ( data , min_count , bins ) :
r'''Merge bins with right - neighbour until each bin has a minimum number of data - points .
: arguments :
* * data * * ( ` ` < array _ like > ` ` )
Input data . The histogram is computed over the flattened array .
* * bins * * ( ` ` < array _ l... | # escape
if min_count is None :
return bins
if min_count is False :
return bins
# check
if type ( min_count ) != int :
raise IOError ( '"min_count" must be an integer number' )
# keep removing where needed
while True :
P , _ = np . histogram ( data , bins = bins , density = False )
idx = np . where ... |
def add_location_timezone_to_device ( self , device_obj , location , timezone ) :
"""Returns ' device object ' with updated location
http : / / docs . exosite . com / portals / # update - device
http : / / docs . exosite . com / portals / # device - object""" | dictify_device_meta ( device_obj )
device_obj [ 'info' ] [ 'description' ] [ 'meta' ] [ 'location' ] = location
device_obj [ 'info' ] [ 'description' ] [ 'meta' ] [ 'Location' ] = location
device_obj [ 'info' ] [ 'description' ] [ 'meta' ] [ 'timezone' ] = timezone
device_obj [ 'info' ] [ 'description' ] [ 'meta' ] [ '... |
def Pop ( self ) :
"""Remove the tag from the front of the list and return it .""" | if self . tagList :
tag = self . tagList [ 0 ]
del self . tagList [ 0 ]
else :
tag = None
return tag |
def _authenticate_client ( self , client , secret ) :
"""Returns response of authenticating with the given client and
secret .""" | client_s = str . join ( ':' , [ client , secret ] )
credentials = base64 . b64encode ( client_s . encode ( 'utf-8' ) ) . decode ( 'utf-8' )
headers = { 'Content-Type' : 'application/x-www-form-urlencoded' , 'Cache-Control' : 'no-cache' , 'Authorization' : 'Basic ' + credentials }
params = { 'client_id' : client , 'gran... |
def vrrp_priority ( self , ** kwargs ) :
"""Set VRRP priority .
Args :
int _ type ( str ) : Type of interface . ( gigabitethernet ,
tengigabitethernet , etc ) .
name ( str ) : Name of interface . ( 1/0/5 , 1/0/10 , etc ) .
vrid ( str ) : VRRPv3 ID .
priority ( str ) : VRRP Priority .
ip _ version ( st... | int_type = kwargs . pop ( 'int_type' ) . lower ( )
name = kwargs . pop ( 'name' )
vrid = kwargs . pop ( 'vrid' )
priority = kwargs . pop ( 'priority' )
ip_version = int ( kwargs . pop ( 'ip_version' ) )
rbridge_id = kwargs . pop ( 'rbridge_id' , '1' )
callback = kwargs . pop ( 'callback' , self . _callback )
valid_int_... |
def cast_scalar ( method ) :
"""Cast scalars to constant interpolating objects""" | @ wraps ( method )
def new_method ( self , other ) :
if np . isscalar ( other ) :
other = type ( self ) ( [ other ] , self . domain ( ) )
return method ( self , other )
return new_method |
def single_run_max_confidence_recipe ( sess , model , x , y , nb_classes , eps , clip_min , clip_max , eps_iter , nb_iter , report_path , batch_size = BATCH_SIZE , eps_iter_small = None ) :
"""A reasonable attack bundling recipe for a max norm threat model and
a defender that uses confidence thresholding . This r... | noise_attack = Noise ( model , sess )
pgd_attack = ProjectedGradientDescent ( model , sess )
threat_params = { "eps" : eps , "clip_min" : clip_min , "clip_max" : clip_max }
noise_attack_config = AttackConfig ( noise_attack , threat_params , "noise" )
attack_configs = [ noise_attack_config ]
pgd_attack_configs = [ ]
pgd... |
def onChangeSelectedBlocksIndent ( self , increase , withSpace = False ) :
"""Tab or Space pressed and few blocks are selected , or Shift + Tab pressed
Insert or remove text from the beginning of blocks""" | def blockIndentation ( block ) :
text = block . text ( )
return text [ : len ( text ) - len ( text . lstrip ( ) ) ]
def cursorAtSpaceEnd ( block ) :
cursor = QTextCursor ( block )
cursor . setPosition ( block . position ( ) + len ( blockIndentation ( block ) ) )
return cursor
def indentBlock ( block... |
def fix ( self , * args , ** kwargs ) :
"""Turns parameters to constants . As arguments , parameters must be strings .
As keyword arguments , they can be set at the same time .
Note this will NOT work when specifying a non - string fit function ,
because there is no flexibility in the number of arguments . To... | # first set all the keyword argument values
self . set ( ** kwargs )
# get everything into one big list
pnames = list ( args ) + list ( kwargs . keys ( ) )
# move each pname to the constants
for pname in pnames :
if not pname in self . _pnames :
self . _error ( "Naughty. '" + pname + "' is not a valid fit p... |
def is_mod_function ( mod , fun ) :
"""Checks if a function in a module was declared in that module .
http : / / stackoverflow . com / a / 1107150/3004221
Args :
mod : the module
fun : the function""" | return inspect . isfunction ( fun ) and inspect . getmodule ( fun ) == mod |
def get ( self , thread_uuid , uuid ) :
"""Get one thread member .""" | members = ( v for v in self . list ( thread_uuid ) if v . get ( 'userUuid' ) == uuid )
for i in members :
self . log . debug ( i )
return i
return None |
def ziptake ( items_list , indexes_list ) :
"""SeeAlso :
vt . ziptake""" | return [ take ( list_ , index_list ) for list_ , index_list in zip ( items_list , indexes_list ) ] |
def create_resource ( self , resource_form ) :
"""Creates a new ` ` Resource ` ` .
arg : resource _ form ( osid . resource . ResourceForm ) : the form for
this ` ` Resource ` `
return : ( osid . resource . Resource ) - the new ` ` Resource ` `
raise : IllegalState - ` ` resource _ form ` ` already used in a... | # Implemented from template for
# osid . resource . ResourceAdminSession . create _ resource _ template
collection = JSONClientValidated ( 'resource' , collection = 'Resource' , runtime = self . _runtime )
if not isinstance ( resource_form , ABCResourceForm ) :
raise errors . InvalidArgument ( 'argument type is not... |
def _inner_convert_old_schema ( self , node , depth ) :
"""Internal recursion helper for L { _ convert _ old _ schema } .
@ param node : A node in the associative list tree as described in
_ convert _ old _ schema . A two tuple of ( name , parameter ) .
@ param depth : The depth that the node is at . This is ... | name , parameter_description = node
if not isinstance ( parameter_description , list ) : # This is a leaf , i . e . , an actual L { Parameter } instance .
return parameter_description
if depth % 2 == 0 : # we ' re processing a structure .
fields = { }
for node in parameter_description :
fields [ nod... |
def apply_operator_overloading ( ) :
"""Function to apply operator overloading to Publisher class""" | # operator overloading is ( unfortunately ) not working for the following
# cases :
# int , float , str - should return appropriate type instead of a Publisher
# len - should return an integer
# " x in y " - is using _ _ bool _ _ which is not working with Publisher
for method in ( '__lt__' , '__le__' , '__eq__' , '__ne... |
def _rmsprop ( self , grads , cache = None , decay_rate = 0.95 ) :
"""Uses RMSProp to compute step from gradients .
Args :
grads : numpy array of gradients .
cache : numpy array of same shape as ` grads ` as RMSProp cache
decay _ rate : How fast to decay cache
Returns :
A tuple of
step : numpy array o... | if cache is None :
cache = np . zeros_like ( grads )
cache = decay_rate * cache + ( 1 - decay_rate ) * grads ** 2
step = - grads / np . sqrt ( cache + K . epsilon ( ) )
return step , cache |
def lookup ( self , nick ) :
"""Looks for the most recent paste by a given nick .
Returns the uid or None""" | query = dict ( nick = nick )
order = [ ( 'time' , pymongo . DESCENDING ) ]
recs = self . db . pastes . find ( query ) . sort ( order ) . limit ( 1 )
try :
return next ( recs ) [ 'uid' ]
except StopIteration :
pass |
def require_sequence ( self ) -> None :
"""Require the node to be a sequence .""" | if not isinstance ( self . yaml_node , yaml . SequenceNode ) :
raise RecognitionError ( ( '{}{}A sequence is required here' ) . format ( self . yaml_node . start_mark , os . linesep ) ) |
def _add_modifiers ( self , sql , blueprint , column ) :
"""Add the column modifiers to the deifinition""" | for modifier in self . _modifiers :
method = '_modify_%s' % modifier
if hasattr ( self , method ) :
sql += getattr ( self , method ) ( blueprint , column )
return sql |
def Tethering_bind ( self , port ) :
"""Function path : Tethering . bind
Domain : Tethering
Method name : bind
Parameters :
Required arguments :
' port ' ( type : integer ) - > Port number to bind .
No return value .
Description : Request browser port binding .""" | assert isinstance ( port , ( int , ) ) , "Argument 'port' must be of type '['int']'. Received type: '%s'" % type ( port )
subdom_funcs = self . synchronous_command ( 'Tethering.bind' , port = port )
return subdom_funcs |
def make_token_post ( server , data ) :
"""Try getting an access token from the server . If successful , returns the
JSON response . If unsuccessful , raises an OAuthException .""" | try :
response = requests . post ( server + TOKEN_ENDPOINT , data = data , timeout = TIMEOUT )
body = response . json ( )
except Exception as e :
log . warning ( 'Other error when exchanging code' , exc_info = True )
raise OAuthException ( error = 'Authentication Failed' , error_description = str ( e ) ... |
def describe_stream ( self , stream_arn , first_shard = None ) :
"""Wraps : func : ` boto3 . DynamoDBStreams . Client . describe _ stream ` , handling continuation tokens .
: param str stream _ arn : Stream arn , usually from the model ' s ` ` Meta . stream [ " arn " ] ` ` .
: param str first _ shard : * ( Opti... | description = { "Shards" : [ ] }
request = { "StreamArn" : stream_arn , "ExclusiveStartShardId" : first_shard }
# boto3 isn ' t down with literal Nones .
if first_shard is None :
request . pop ( "ExclusiveStartShardId" )
while request . get ( "ExclusiveStartShardId" ) is not missing :
try :
response = s... |
def read_objfile ( fname ) :
"""Takes . obj filename and returns dict of object properties for each object in file .""" | verts = defaultdict ( list )
obj_props = [ ]
with open ( fname ) as f :
lines = f . read ( ) . splitlines ( )
for line in lines :
if line :
split_line = line . strip ( ) . split ( ' ' , 1 )
if len ( split_line ) < 2 :
continue
prefix , value = split_line [ 0 ] , split_line [ ... |
def _get_bcpIn ( self ) :
"""Subclasses may override this method .""" | segment = self . _segment
offCurves = segment . offCurve
if offCurves :
bcp = offCurves [ - 1 ]
x , y = relativeBCPIn ( self . anchor , ( bcp . x , bcp . y ) )
else :
x = y = 0
return ( x , y ) |
def sinatra_path_to_regex ( cls , path ) :
"""Converts a sinatra - style path to a regex with named
parameters .""" | # Return the path if already a ( compiled ) regex
if type ( path ) is cls . regex_type :
return path
# Build a regular expression string which is split on the ' / ' character
regex = [ "(?P<{}>\w+)" . format ( segment [ 1 : ] ) if cls . sinatra_param_regex . match ( segment ) else segment for segment in path . spli... |
def save_snapshot ( self , context , snapshot_name , save_memory = 'No' ) :
"""Saves virtual machine to a snapshot
: param context : resource context of the vCenterShell
: type context : models . QualiDriverModels . ResourceCommandContext
: param snapshot _ name : snapshot name to save to
: type snapshot _ ... | resource_details = self . _parse_remote_model ( context )
created_snapshot_path = self . command_wrapper . execute_command_with_connection ( context , self . snapshot_saver . save_snapshot , resource_details . vm_uuid , snapshot_name , save_memory )
return set_command_result ( created_snapshot_path ) |
def d_hkl ( self , miller_index : Vector3Like ) -> float :
"""Returns the distance between the hkl plane and the origin
Args :
miller _ index ( [ h , k , l ] ) : Miller index of plane
Returns :
d _ hkl ( float )""" | gstar = self . reciprocal_lattice_crystallographic . metric_tensor
hkl = np . array ( miller_index )
return 1 / ( ( dot ( dot ( hkl , gstar ) , hkl . T ) ) ** ( 1 / 2 ) ) |
def _make_symlink ( self , link_name : str , link_target : str ) :
'''Make a symlink on the system .''' | path = self . _file_writer_session . extra_resource_path ( 'dummy' )
if path :
dir_path = os . path . dirname ( path )
symlink_path = os . path . join ( dir_path , link_name )
_logger . debug ( 'symlink {} -> {}' , symlink_path , link_target )
os . symlink ( link_target , symlink_path )
_logger . in... |
def classify_intersection5 ( s , curve1 , curve2 ) :
"""Image for : func : ` . _ surface _ helpers . classify _ intersection ` docstring .""" | if NO_IMAGES :
return
surface1 = bezier . Surface . from_nodes ( np . asfortranarray ( [ [ 1.0 , 1.5 , 2.0 , 1.25 , 1.75 , 1.5 ] , [ 0.0 , 1.0 , 0.0 , 0.9375 , 0.9375 , 1.875 ] , ] ) )
surface2 = bezier . Surface . from_nodes ( np . asfortranarray ( [ [ 3.0 , 1.5 , 0.0 , 2.25 , 0.75 , 1.5 ] , [ 0.0 , 1.0 , 0.0 , - ... |
def getAnalysisRequestTemplatesInfo ( self ) :
"""Returns a lost of dicts with the analysis request templates infomration
[ { ' uid ' : ' xxxx ' , ' id ' : ' xxxx ' , ' title ' : ' xxx ' , ' url ' : ' xxx ' } , . . . ]""" | arts_list = [ ]
for art in self . context . ar_templates :
pc = getToolByName ( self . context , 'portal_catalog' )
contentFilter = { 'portal_type' : 'ARTemplate' , 'UID' : art }
art_brain = pc ( contentFilter )
if len ( art_brain ) == 1 :
art_obj = art_brain [ 0 ] . getObject ( )
arts_l... |
def put ( self , value , priority = 100 ) :
"""Put a task into the queue .
Args :
value ( str ) : Task data .
priority ( int ) : An optional priority as an integer with at most 3 digits .
Lower values signify higher priority .""" | task_name = '{}{:03d}_{}' . format ( self . TASK_PREFIX , priority , self . _counter )
path = posixpath . join ( self . _queue_path , task_name )
self . _client . kv [ path ] = value |
def delete_orderrun ( backend , orderrun_id ) :
"""Delete the orderrun specified by the argument .""" | click . secho ( '%s - Deleting orderrun %s' % ( get_datetime ( ) , orderrun_id ) , fg = 'green' )
check_and_print ( DKCloudCommandRunner . delete_orderrun ( backend . dki , orderrun_id . strip ( ) ) ) |
def setPgConfigOptions ( ** kwargs ) :
"""Sets the PyQtGraph config options and emits a log message""" | for key , value in kwargs . items ( ) :
logger . debug ( "Setting PyQtGraph config option: {} = {}" . format ( key , value ) )
pg . setConfigOptions ( ** kwargs ) |
def finalize_content ( self ) :
"""Finalize the additons""" | self . write_closed = True
body = self . raw_body . decode ( self . encoding )
self . _init_xml ( body )
self . _form_output ( ) |
def is_ancestor_of_book ( self , id_ , book_id ) :
"""Tests if an ` ` Id ` ` is an ancestor of a book .
arg : id ( osid . id . Id ) : an ` ` Id ` `
arg : book _ id ( osid . id . Id ) : the ` ` Id ` ` of a book
return : ( boolean ) - ` ` tru ` ` e if this ` ` id ` ` is an ancestor of
` ` book _ id , ` ` ` ` ... | # Implemented from template for
# osid . resource . BinHierarchySession . is _ ancestor _ of _ bin
if self . _catalog_session is not None :
return self . _catalog_session . is_ancestor_of_catalog ( id_ = id_ , catalog_id = book_id )
return self . _hierarchy_session . is_ancestor ( id_ = id_ , ancestor_id = book_id ... |
def OnGoToCell ( self , event ) :
"""Shift a given cell into view""" | row , col , tab = event . key
try :
self . grid . actions . cursor = row , col , tab
except ValueError :
msg = _ ( "Cell {key} outside grid shape {shape}" ) . format ( key = event . key , shape = self . grid . code_array . shape )
post_command_event ( self . grid . main_window , self . grid . StatusBarMsg ,... |
def unmarshal ( self , value , custom_formatters = None , strict = True ) :
"""Unmarshal parameter from the value .""" | if self . deprecated :
warnings . warn ( "The schema is deprecated" , DeprecationWarning )
casted = self . cast ( value , custom_formatters = custom_formatters , strict = strict )
if casted is None and not self . required :
return None
if self . enum and casted not in self . enum :
raise InvalidSchemaValue ... |
def get_documentation ( self , element , namespace = None , schema_str = None ) :
"""* * Helper method : * * should return an schema specific documentation
given an element parsing or getting the ` Clark ' s Notation ` _
` { url : schema } Element ` from the message error on validate method .
: param str elem... | if namespace is None :
namespace = { 'xs' : 'http://www.w3.org/2001/XMLSchema' }
schema_root = etree . parse ( StringIO ( self . schema ) )
document = schema_root . xpath ( self . get_element_from_clark ( element ) , namespaces = namespace )
return document and document [ 0 ] . text or '' |
def _format_str ( format_int ) :
"""Return the string representation of a given numeric format .""" | for dictionary in _formats , _subtypes , _endians :
for k , v in dictionary . items ( ) :
if v == format_int :
return k
else :
return 'n/a' |
def description ( self , request , tag ) :
"""Render the description of the wrapped L { Parameter } instance .""" | if self . parameter . description is not None :
tag [ self . parameter . description ]
return tag |
def image_save_buffer_fix ( maxblock = 1048576 ) :
"""Contextmanager that change MAXBLOCK in ImageFile .""" | before = ImageFile . MAXBLOCK
ImageFile . MAXBLOCK = maxblock
try :
yield
finally :
ImageFile . MAXBLOCK = before |
def _user_to_rgba ( color , expand = True , clip = False ) :
"""Convert color ( s ) from any set of fmts ( str / hex / arr ) to RGB ( A ) array""" | if color is None :
color = np . zeros ( 4 , np . float32 )
if isinstance ( color , string_types ) :
color = _string_to_rgb ( color )
elif isinstance ( color , ColorArray ) :
color = color . rgba
# We have to treat this specially
elif isinstance ( color , ( list , tuple ) ) :
if any ( isinstance ( c , st... |
def query_geonames_country ( self , placename , country ) :
"""Like query _ geonames , but this time limited to a specified country .""" | # first , try for an exact phrase match
q = { "multi_match" : { "query" : placename , "fields" : [ 'name^5' , 'asciiname^5' , 'alternativenames' ] , "type" : "phrase" } }
res = self . conn . filter ( "term" , country_code3 = country ) . query ( q ) [ 0 : 50 ] . execute ( )
# if no results , use some fuzziness , but sti... |
def get_pvalue ( self ) :
"""Returns pval for 1st method , if it exists . Else returns uncorrected pval .""" | if self . method_flds :
return getattr ( self , "p_{m}" . format ( m = self . get_method_name ( ) ) )
return getattr ( self , "p_uncorrected" ) |
def p_program_def ( t ) :
"""program _ def : PROGRAM ID LBRACE version _ def version _ def _ list RBRACE EQUALS constant SEMI""" | print ( "Ignoring program {0:s} = {1:s}" . format ( t [ 2 ] , t [ 8 ] ) )
global name_dict
id = t [ 2 ]
value = t [ 8 ]
lineno = t . lineno ( 1 )
if id_unique ( id , 'program' , lineno ) :
name_dict [ id ] = const_info ( id , value , lineno ) |
def format ( self , altitude = None , deg_char = '' , min_char = 'm' , sec_char = 's' ) :
"""Format decimal degrees ( DD ) to degrees minutes seconds ( DMS )""" | latitude = "%s %s" % ( format_degrees ( abs ( self . latitude ) , symbols = { 'deg' : deg_char , 'arcmin' : min_char , 'arcsec' : sec_char } ) , self . latitude >= 0 and 'N' or 'S' )
longitude = "%s %s" % ( format_degrees ( abs ( self . longitude ) , symbols = { 'deg' : deg_char , 'arcmin' : min_char , 'arcsec' : sec_c... |
def calc_tkor_v1 ( self ) :
"""Adjust the given air temperature values .
Required control parameters :
| NHRU |
| KT |
Required input sequence :
| TemL |
Calculated flux sequence :
| TKor |
Basic equation :
: math : ` TKor = KT + TemL `
Example :
> > > from hydpy . models . lland import *
> ... | con = self . parameters . control . fastaccess
inp = self . sequences . inputs . fastaccess
flu = self . sequences . fluxes . fastaccess
for k in range ( con . nhru ) :
flu . tkor [ k ] = con . kt [ k ] + inp . teml |
def cudnnGetConvolution2dForwardOutputDim ( convDesc , inputTensorDesc , wDesc ) :
"""Return the dimensions of the output tensor given a convolution descriptor .
This function returns the dimensions of the resulting 4D tensor of a 2D
convolution , given the convolution descriptor , the input tensor descriptor a... | n = ctypes . c_int ( )
c = ctypes . c_int ( )
h = ctypes . c_int ( )
w = ctypes . c_int ( )
status = _libcudnn . cudnnGetConvolution2dForwardOutputDim ( convDesc , inputTensorDesc , wDesc , ctypes . byref ( n ) , ctypes . byref ( c ) , ctypes . byref ( h ) , ctypes . byref ( w ) )
cudnnCheckStatus ( status )
return n .... |
def describe_features ( self , traj ) :
"""Return a list of dictionaries describing the atom pair features .
Parameters
traj : mdtraj . Trajectory
The trajectory to describe
Returns
feature _ descs : list of dict
Dictionary describing each feature with the following information
about the atoms partici... | feature_descs = [ ]
top = traj . topology
residue_indices = [ [ top . atom ( i [ 0 ] ) . residue . index , top . atom ( i [ 1 ] ) . residue . index ] for i in self . atom_indices ]
aind = [ ]
resseqs = [ ]
resnames = [ ]
for ind , resid_ids in enumerate ( residue_indices ) :
aind += [ [ i for i in self . atom_indic... |
def samples_to_records ( samples , default_keys = None ) :
"""Convert samples into output CWL records .""" | from bcbio . pipeline import run_info
RECORD_CONVERT_TO_LIST = set ( [ "config__algorithm__tools_on" , "config__algorithm__tools_off" , "reference__genome_context" ] )
all_keys = _get_all_cwlkeys ( samples , default_keys )
out = [ ]
for data in samples :
for raw_key in sorted ( list ( all_keys ) ) :
key = r... |
def build ( documentPath , outputUFOFormatVersion = 3 , roundGeometry = True , verbose = True , # not supported
logPath = None , # not supported
progressFunc = None , # not supported
processRules = True , logger = None , useVarlib = False , ) :
"""Simple builder for UFO designspaces .""" | import os , glob
if os . path . isdir ( documentPath ) : # process all * . designspace documents in this folder
todo = glob . glob ( os . path . join ( documentPath , "*.designspace" ) )
else : # process the
todo = [ documentPath ]
results = [ ]
for path in todo :
document = DesignSpaceProcessor ( ufoVersio... |
def read ( self , timeout = 20.0 ) :
"""read data on the IN endpoint associated to the HID interface""" | start = time ( )
while len ( self . rcv_data ) == 0 :
sleep ( 0 )
if time ( ) - start > timeout : # Read operations should typically take ~ 1-2ms .
# If this exception occurs , then it could indicate
# a problem in one of the following areas :
# 1 . Bad usb driver causing either a dropped read or wr... |
def _utc_year ( self ) :
"""Return a fractional UTC year , for convenience when plotting .
An experiment , probably superseded by the ` ` J ` ` attribute below .""" | d = self . _utc_float ( ) - 1721059.5
# d + = offset
C = 365 * 100 + 24
d -= 365
d += d // C - d // ( 4 * C )
d += 365
# Y = d / C * 100
# print ( Y )
K = 365 * 3 + 366
d -= ( d + K * 7 // 8 ) // K
# d - = d / / 1461.0
return d / 365.0 |
def migrate_database ( adapter ) :
"""Migrate an old loqusdb instance to 1.0
Args :
adapter
Returns :
nr _ updated ( int ) : Number of variants that where updated""" | all_variants = adapter . get_variants ( )
nr_variants = all_variants . count ( )
nr_updated = 0
with progressbar ( all_variants , label = "Updating variants" , length = nr_variants ) as bar :
for variant in bar : # Do not update if the variants have the correct format
if 'chrom' in variant :
con... |
def _stripe_object_to_refunds ( cls , target_cls , data , charge ) :
"""Retrieves Refunds for a charge
: param target _ cls : The target class to instantiate per invoice item .
: type target _ cls : ` ` Refund ` `
: param data : The data dictionary received from the Stripe API .
: type data : dict
: param... | refunds = data . get ( "refunds" )
if not refunds :
return [ ]
refund_objs = [ ]
for refund_data in refunds . get ( "data" , [ ] ) :
item , _ = target_cls . _get_or_create_from_stripe_object ( refund_data , refetch = False )
refund_objs . append ( item )
return refund_objs |
async def emit_event ( self , event ) :
"""Publish an event
: param event : Event object""" | self . log . info ( "publishing event on %s" , self . publish_topic )
if self . config . extra [ 'config' ] [ 'pub_options' ] [ 'retain' ] :
try :
await persist_event ( self . publish_topic , event , self . pool )
except SystemError as error :
self . log . error ( error )
return
loop = a... |
def from_line ( cls , line ) :
""": return : New RefLogEntry instance from the given revlog line .
: param line : line bytes without trailing newline
: raise ValueError : If line could not be parsed""" | line = line . decode ( defenc )
fields = line . split ( '\t' , 1 )
if len ( fields ) == 1 :
info , msg = fields [ 0 ] , None
elif len ( fields ) == 2 :
info , msg = fields
else :
raise ValueError ( "Line must have up to two TAB-separated fields." " Got %s" % repr ( line ) )
# END handle first split
oldhexsh... |
def custom_function ( func , input_files , output_file ) :
"""Calls a custom function which must create the output file .
The custom function takes 3 parameters : ` ` input _ files ` ` ,
` ` output _ file ` ` and a boolean ` ` release ` ` .""" | from . modules import utils
return { 'dependencies_fn' : utils . no_dependencies , 'compiler_fn' : func , 'input' : input_files , 'output' : output_file , 'kwargs' : { } , } |
def register ( self , entity ) :
"""Registers a new entity and returns the entity object with an ID""" | response = self . api . post_entity ( entity . serialize )
print ( response )
print ( )
if response [ 'status' ] [ 'code' ] == 200 :
entity . id = response [ 'id' ]
if response [ 'status' ] [ 'code' ] == 409 : # entity already exists
entity . id = next ( i . id for i in self . api . agent_entities if i . name =... |
def makeairplantloop ( data , commdct ) :
"""make the edges for the airloop and the plantloop""" | anode = "epnode"
endnode = "EndNode"
# in plantloop get :
# demand inlet , outlet , branchlist
# supply inlet , outlet , branchlist
plantloops = loops . plantloopfields ( data , commdct )
# splitters
# inlet
# outlet1
# outlet2
splitters = loops . splitterfields ( data , commdct )
# mixer
# outlet
# inlet1
# inlet2
mix... |
def _find_base_tds_url ( catalog_url ) :
"""Identify the base URL of the THREDDS server from the catalog URL .
Will retain URL scheme , host , port and username / password when present .""" | url_components = urlparse ( catalog_url )
if url_components . path :
return catalog_url . split ( url_components . path ) [ 0 ]
else :
return catalog_url |
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