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def add_continuous_regressors_to_design_matrix ( self , regressors ) : """add _ continuous _ regressors _ to _ design _ matrix appends continuously sampled regressors to the existing design matrix . One uses this addition to the design matrix when one expects the data to contain nuisance factors that aren ' t tied ...
previous_design_matrix_shape = self . design_matrix . shape if len ( regressors . shape ) == 1 : regressors = regressors [ np . newaxis , : ] if regressors . shape [ 1 ] != self . resampled_signal . shape [ 1 ] : self . logger . warning ( 'additional regressor shape %s does not conform to designmatrix shape %s'...
def disableGyro ( self ) : """Specifies the device should NOT write gyro values to the FIFO , is not applied until enableFIFO is called . : return :"""
logger . debug ( "Disabling gyro sensor" ) self . fifoSensorMask &= ~ self . enableGyroMask self . _gyroEnabled = False self . _setSampleSizeBytes ( )
def pivot_query_as_matrix ( facet = None , facet_pivot_fields = None , ** kwargs ) : """Pivot query"""
if facet_pivot_fields is None : facet_pivot_fields = [ ] logging . info ( "Additional args: {}" . format ( kwargs ) ) fp = search_associations ( rows = 0 , facet_fields = [ facet ] , facet_pivot_fields = facet_pivot_fields , ** kwargs ) [ 'facet_pivot' ] # we assume only one results = list ( fp . items ( ) ) [ 0 ] ...
def erase ( self , partition , timeout_ms = None ) : """Erases the given partition ."""
self . _simple_command ( 'erase' , arg = partition , timeout_ms = timeout_ms )
def _gser ( a , x ) : "Series representation of Gamma . NumRec sect 6.1."
ITMAX = 100 EPS = 3.e-7 gln = lgamma ( a ) assert ( x >= 0 ) , 'x < 0 in gser' if x == 0 : return 0 , gln ap = a delt = sum = 1. / a for i in range ( ITMAX ) : ap = ap + 1. delt = delt * x / ap sum = sum + delt if abs ( delt ) < abs ( sum ) * EPS : break else : print ( 'a too large, ITMA...
def verify_item_signature ( signature_attribute , encrypted_item , verification_key , crypto_config ) : # type : ( dynamodb _ types . BINARY _ ATTRIBUTE , dynamodb _ types . ITEM , DelegatedKey , CryptoConfig ) - > None """Verify the item signature . : param dict signature _ attribute : Item signature DynamoDB at...
signature = signature_attribute [ Tag . BINARY . dynamodb_tag ] verification_key . verify ( algorithm = verification_key . algorithm , signature = signature , data = _string_to_sign ( item = encrypted_item , table_name = crypto_config . encryption_context . table_name , attribute_actions = crypto_config . attribute_act...
def get_object_collection ( self , object_name = '' ) : """If the remote end exposes a collection of objects under the supplied object name ( empty for top level ) , this method returns a dictionary of these objects stored under their names on the server . This function performs n + 1 calls to the server , wh...
object_names = self . get_object ( object_name ) . get_objects ( ) return { obj : self . get_object ( obj ) for obj in object_names }
def get_coordinates_pdb ( filename ) : """Get coordinates from the first chain in a pdb file and return a vectorset with all the coordinates . Parameters filename : string Filename to read Returns atoms : list List of atomic types V : array ( N , 3 ) where N is number of atoms"""
# PDB files tend to be a bit of a mess . The x , y and z coordinates # are supposed to be in column 31-38 , 39-46 and 47-54 , but this is # not always the case . # Because of this the three first columns containing a decimal is used . # Since the format doesn ' t require a space between columns , we use the # above col...
def publish ( self , titles ) : """Publish a set of episodes to the Podcast ' s RSS feed . : param titles : Either a single episode title or a sequence of episode titles to publish ."""
if isinstance ( titles , Sequence ) and not isinstance ( titles , six . string_types ) : for title in titles : self . episodes [ title ] . publish ( ) elif isinstance ( titles , six . string_types ) : self . episodes [ titles ] . publish ( ) else : raise TypeError ( 'titles must be a string or a seq...
def _JModule ( spec , javaname ) : """( internal ) Front end for creating a java module dynamically"""
cls = _JImportFactory ( spec , javaname ) out = cls ( spec . name ) return out
def columns ( self , ** kw ) : """Creates a results set of column names in specified tables by executing the ODBC SQLColumns function . Each row fetched has the following columns . : param table : the table tname : param catalog : the catalog name : param schema : the schmea name : param column : string...
fut = self . _run_operation ( self . _impl . columns , ** kw ) return fut
def _make_info ( shape_list , num_classes ) : """Create an info - like tuple for feature given some shapes and vocab size ."""
feature_info = collections . namedtuple ( "FeatureInfo" , [ "shape" , "num_classes" ] ) cur_shape = list ( shape_list [ 0 ] ) # We need to merge the provided shapes , put None where they disagree . for shape in shape_list : if len ( shape ) != len ( cur_shape ) : raise ValueError ( "Shapes need to have the ...
def build_table_schema ( data , index = True , primary_key = None , version = True ) : """Create a Table schema from ` ` data ` ` . Parameters data : Series , DataFrame index : bool , default True Whether to include ` ` data . index ` ` in the schema . primary _ key : bool or None , default True column ...
if index is True : data = set_default_names ( data ) schema = { } fields = [ ] if index : if data . index . nlevels > 1 : for level in data . index . levels : fields . append ( convert_pandas_type_to_json_field ( level ) ) else : fields . append ( convert_pandas_type_to_json_fiel...
def c_array ( ctype , values ) : """Convert a python string to c array ."""
if isinstance ( values , np . ndarray ) and values . dtype . itemsize == ctypes . sizeof ( ctype ) : return ( ctype * len ( values ) ) . from_buffer_copy ( values ) return ( ctype * len ( values ) ) ( * values )
def update_empty_fields ( self , ** kwargs ) : """Updates the field of info about an OTU that might not be filled in by a match _ names or taxon call ."""
if self . _is_deprecated is None : self . _is_deprecated = kwargs . get ( 'is_deprecated' ) if self . _is_dubious is None : self . _is_dubious = kwargs . get ( 'is_dubious' ) if self . _is_synonym is None : self . _is_synonym = kwargs . get ( 'is_synonym' ) if self . _synonyms is _EMPTY_TUPLE : self . _...
def _set_enhanced_voq_discard_pkts ( self , v , load = False ) : """Setter method for enhanced _ voq _ discard _ pkts , mapped from YANG variable / telemetry / profile / enhanced _ voq _ discard _ pkts ( list ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ enhanced _ ...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = YANGListType ( "name" , enhanced_voq_discard_pkts . enhanced_voq_discard_pkts , yang_name = "enhanced-voq-discard-pkts" , rest_name = "enhanced-voq-discard-pkts" , parent = self , is_container = 'list' , user_ordered = False ...
def parse_args ( args = None ) : """Parse command line arguments and return a dictionary of options for ttfautohint . ttfautohint function . ` args ` can be either None , a list of strings , or a single string , that is split into individual options with ` shlex . split ` . When ` args ` is None , the conso...
import argparse from ttfautohint import __version__ , libttfautohint from ttfautohint . cli import USAGE , DESCRIPTION , EPILOG version_string = "ttfautohint-py %s (libttfautohint %s)" % ( __version__ , libttfautohint . version_string ) if args is None : capture_sys_exit = False else : capture_sys_exit = True ...
def get_ec_index ( self , ec_handle ) : '''Get the index of the execution context with the given handle . @ param ec _ handle The handle of the execution context to look for . @ type ec _ handle str @ return The index into the owned + participated arrays , suitable for use in methods such as @ ref activate ...
with self . _mutex : for ii , ec in enumerate ( self . owned_ecs ) : if ec . handle == ec_handle : return ii for ii , ec in enumerate ( self . participating_ecs ) : if ec . handle == ec_handle : return ii + len ( self . owned_ecs ) raise exceptions . NoECWithHandleErr...
def _set_all_lims ( self , which , lim , d , scale , fontsize = None ) : """Set limits and ticks for an axis for whole figure . This will set axis limits and tick marks for the entire figure . It can be overridden in the SinglePlot class . Args : which ( str ) : The indicator of which part of the plots to...
setattr ( self . general , which + 'lims' , lim ) setattr ( self . general , 'd' + which , d ) setattr ( self . general , which + 'scale' , scale ) if fontsize is not None : setattr ( self . general , which + '_tick_label_fontsize' , fontsize ) return
def text_height ( text ) : """Return the total height of the < text > and the length from the base point to the top of the text box ."""
( d1 , d2 , ymin , ymax ) = get_dimension ( text ) return ( ymax - ymin , ymax )
def set_remote_host_environment_variable ( host , variable_name , variable_value , env_file = '/etc/bashrc' ) : """Sets an environment variable on the remote host in the specified environment file : param host : ( str ) host to set environment variable on : param variable _ name : ( str ) name of the variable...
log = logging . getLogger ( mod_logger + '.set_remote_host_environment_variable' ) if not isinstance ( host , basestring ) : msg = 'host argument must be a string' log . error ( msg ) raise TypeError ( msg ) if not isinstance ( variable_name , basestring ) : msg = 'variable_name argument must be a strin...
def read ( self , filename ) : """Reads config file"""
try : conf_file = open ( filename , 'r' ) config = conf_file . read ( ) config_keys = re . findall ( r'\[.*\]' , config ) self . section_keys = [ key [ 1 : - 1 ] for key in config_keys ] except IOError as e : # Pass if file not found if e . errno != 2 : raise return self . config_parser . re...
def distance_correlation_sqr ( x , y , ** kwargs ) : """distance _ correlation _ sqr ( x , y , * , exponent = 1) Computes the usual ( biased ) estimator for the squared distance correlation between two random vectors . Parameters x : array _ like First random vector . The columns correspond with the indiv...
if _can_use_fast_algorithm ( x , y , ** kwargs ) : return _distance_correlation_sqr_fast ( x , y ) else : return _distance_correlation_sqr_naive ( x , y , ** kwargs )
def forward ( node , analysis ) : """Perform a given analysis on all functions within an AST ."""
if not isinstance ( analysis , Forward ) : raise TypeError ( 'not a valid forward analysis object' ) for succ in gast . walk ( node ) : if isinstance ( succ , gast . FunctionDef ) : cfg_obj = CFG . build_cfg ( succ ) analysis . visit ( cfg_obj . entry ) return node
def scrnaseq_concatenate_metadata ( samples ) : """Create file same dimension than mtx . colnames with metadata and sample name to help in the creation of the SC object ."""
barcodes = { } counts = "" metadata = { } has_sample_barcodes = False for sample in dd . sample_data_iterator ( samples ) : if dd . get_sample_barcodes ( sample ) : has_sample_barcodes = True with open ( dd . get_sample_barcodes ( sample ) ) as inh : for line in inh : col...
def _set_axis_limits ( self , axis , view , subplots , ranges ) : """Compute extents for current view and apply as axis limits"""
# Extents extents = self . get_extents ( view , ranges ) if not extents or self . overlaid : axis . autoscale_view ( scalex = True , scaley = True ) return valid_lim = lambda c : util . isnumeric ( c ) and not np . isnan ( c ) coords = [ coord if np . isreal ( coord ) or isinstance ( coord , np . datetime64 ) e...
def json ( self ) : """str : the ontology serialized in json format ."""
return json . dumps ( self . terms , indent = 4 , sort_keys = True , default = operator . attrgetter ( "__deref__" ) )
def load_from_rho_file ( self , filename ) : """Convenience function that loads two parameter sets from a rho . dat file , as used by CRMod for forward resistivity / phase models . Parameters filename : string , file path filename of rho . dat file Returns cid _ mag : int ID of magnitude parameter set...
data = np . loadtxt ( filename , skiprows = 1 ) cid_mag = self . add_data ( data [ : , 0 ] ) cid_pha = self . add_data ( data [ : , 1 ] ) return cid_mag , cid_pha
def match_sequence ( self , tokens , item ) : """Matches a sequence ."""
tail = None if len ( tokens ) == 2 : series_type , matches = tokens else : series_type , matches , tail = tokens self . add_check ( "_coconut.isinstance(" + item + ", _coconut.abc.Sequence)" ) if tail is None : self . add_check ( "_coconut.len(" + item + ") == " + str ( len ( matches ) ) ) else : self ....
def update ( name ) : '''Install a named update . : param str name : The name of the of the update to install . : return : True if successfully updated , otherwise False : rtype : bool CLI Example : . . code - block : : bash salt ' * ' softwareupdate . update < update - name >'''
if not update_available ( name ) : raise SaltInvocationError ( 'Update not available: {0}' . format ( name ) ) cmd = [ 'softwareupdate' , '--install' , name ] salt . utils . mac_utils . execute_return_success ( cmd ) return not update_available ( name )
def OnCellFontSize ( self , event ) : """Cell font size event handler"""
with undo . group ( _ ( "Font size" ) ) : self . grid . actions . set_attr ( "pointsize" , event . size ) self . grid . ForceRefresh ( ) self . grid . update_attribute_toolbar ( ) event . Skip ( )
def call_fget ( self , obj ) -> Any : """Return the predefined custom value when available , otherwise , the value defined by the getter function ."""
custom = vars ( obj ) . get ( self . name ) if custom is None : return self . fget ( obj ) return custom
def _upload_folder_in_background ( self , folder_path , container , ignore , upload_key , ttl = None ) : """Runs the folder upload in the background ."""
uploader = FolderUploader ( folder_path , container , ignore , upload_key , self , ttl = ttl ) uploader . start ( )
def prepareDatasetMigrationList ( self , conn , request ) : """Prepare the ordered lists of blocks based on input DATASET ( note Block is different ) 1 . Get list of blocks from source 2 . Check and see if these blocks are already at DST 3 . Check if dataset has parents 4 . Check if parent blocks are alread...
ordered_dict = { } order_counter = 0 srcdataset = request [ "migration_input" ] url = request [ "migration_url" ] try : tmp_ordered_dict = self . processDatasetBlocks ( url , conn , srcdataset , order_counter ) if tmp_ordered_dict != { } : ordered_dict . update ( tmp_ordered_dict ) self . logger...
def price_dataframe ( symbols = 'sp5002012' , start = datetime . datetime ( 2008 , 1 , 1 ) , end = datetime . datetime ( 2009 , 12 , 31 ) , price_type = 'actual_close' , cleaner = clean_dataframe , ) : """Retrieve the prices of a list of equities as a DataFrame ( columns = symbols ) Arguments : symbols ( list o...
if isinstance ( price_type , basestring ) : price_type = [ price_type ] start = util . normalize_date ( start or datetime . date ( 2008 , 1 , 1 ) ) end = util . normalize_date ( end or datetime . date ( 2009 , 12 , 31 ) ) symbols = normalize_symbols ( symbols ) t = du . getNYSEdays ( start , end , datetime . timede...
def _decreaseIndent ( self , indent ) : """Remove 1 indentation level"""
if indent . endswith ( self . _qpartIndent ( ) ) : return indent [ : - len ( self . _qpartIndent ( ) ) ] else : # oops , strange indentation , just return previous indent return indent
def start ( self ) : """Starts the uBridge hypervisor process ."""
env = os . environ . copy ( ) if sys . platform . startswith ( "win" ) : # add the Npcap directory to $ PATH to force uBridge to use npcap DLL instead of Winpcap ( if installed ) system_root = os . path . join ( os . path . expandvars ( "%SystemRoot%" ) , "System32" , "Npcap" ) if os . path . isdir ( system_roo...
def _get_vcap_services ( vcap_services = None ) : """Retrieves the VCAP Services information from the ` ConfigParams . VCAP _ SERVICES ` field in the config object . If ` vcap _ services ` is not specified , it takes the information from VCAP _ SERVICES environment variable . Args : vcap _ services ( str ) : ...
vcap_services = vcap_services or os . environ . get ( 'VCAP_SERVICES' ) if not vcap_services : raise ValueError ( "VCAP_SERVICES information must be supplied as a parameter or as environment variable 'VCAP_SERVICES'" ) # If it was passed to config as a dict , simply return it if isinstance ( vcap_services , dict ) ...
def plot ( self , save_path = None , close = False , bbox_inches = "tight" , pad_inches = 1 ) : """Plot figure . Parameters save _ path : string ( optional ) Save path . Default is None . close : boolean ( optional ) Toggle automatic figure closure after plotting . Default is False . bbox _ inches : n...
# final manipulations for plot in self . subplots . flatten ( ) : # set limits plot . set_xlim ( - 0.1 , 1.1 ) plot . set_ylim ( - 0.1 , 1.1 ) # remove guff plot . axis ( "off" ) # save if save_path : plt . savefig ( save_path , transparent = True , dpi = 300 , bbox_inches = bbox_inches , pad_inches...
def new_eventtype ( self , test_type_str = None ) : """Action : create dialog to add new event type ."""
if self . annot is None : # remove if buttons are disabled self . parent . statusBar ( ) . showMessage ( 'No score file loaded' ) return if test_type_str : answer = test_type_str , True else : answer = QInputDialog . getText ( self , 'New Event Type' , 'Enter new event\'s name' ) if answer [ 1 ] : s...
def prepare ( self , data_batch , sparse_row_id_fn = None ) : '''Prepares the module for processing a data batch . Usually involves switching bucket and reshaping . For modules that contain ` row _ sparse ` parameters in KVStore , it prepares the ` row _ sparse ` parameters based on the sparse _ row _ id _ fn...
assert self . binded if sparse_row_id_fn is not None : if not self . _kvstore or not self . _update_on_kvstore : warnings . warn ( UserWarning ( "Parameters are not updated in the KVStore. " "No need to call sparse_row_id_fn." ) ) else : row_ids = sparse_row_id_fn ( data_batch ) assert (...
def log_url ( self , url_data ) : """Send new url to all configured loggers ."""
self . check_active_loggers ( ) do_print = self . do_print ( url_data ) # Only send a transport object to the loggers , not the complete # object instance . for log in self . loggers : log . log_filter_url ( url_data , do_print )
def _check_permission ( self , request ) : """Check user permissions . : raises : Forbidden , if user doesn ' t have access to the resource ."""
if self . access_controller : self . access_controller . check_perm ( request , self )
def validate_value ( self , value ) : """Validate new user / group value against any User / Group restrictions Attempts to resolve generic UserGroup instances if necessary to respect special " Everyone " group , and " All Users " + " All Groups " options"""
super ( UserGroupField , self ) . validate_value ( value ) if value is not None : # Ignore validation if all users + groups are allowed if self . _show_all_groups and self . _show_all_users : return # Try to directly check allowed ids against user / group id first to avoid having to resolve generic ...
async def get_action_context_and_template ( chain , parent_link , decision_link ) : """Get the appropriate json - e context and template for an action task . Args : chain ( ChainOfTrust ) : the chain of trust . parent _ link ( LinkOfTrust ) : the parent link to test . decision _ link ( LinkOfTrust ) : the p...
actions_path = decision_link . get_artifact_full_path ( 'public/actions.json' ) all_actions = load_json_or_yaml ( actions_path , is_path = True ) [ 'actions' ] action_name = get_action_callback_name ( parent_link . task ) action_defn = _get_action_from_actions_json ( all_actions , action_name ) jsone_context = await po...
def runtime ( self ) : """Return ellapsed time and reset start ."""
t = time . time ( ) - self . start self . start = time . time ( ) return t
def follow_user ( self , user , delegate ) : """Follow the given user . Returns the user info back to the given delegate"""
parser = txml . Users ( delegate ) return self . __postPage ( '/friendships/create/%s.xml' % ( user ) , parser )
def p_statement_for ( p ) : 'statement : FOR LPAREN for _ expr SEMI for _ expr SEMI for _ expr RPAREN for _ statement'
p [ 0 ] = ast . For ( p [ 3 ] , p [ 5 ] , p [ 7 ] , p [ 9 ] , lineno = p . lineno ( 1 ) )
def _to_patches ( self , X ) : """Reshapes input to patches of the size of classifier ' s receptive field . For example : input X shape : [ n _ samples , n _ pixels _ y , n _ pixels _ x , n _ bands ] output : [ n _ samples * n _ pixels _ y / receptive _ field _ y * n _ pixels _ x / receptive _ field _ x , r...
window = self . receptive_field asteps = self . receptive_field if len ( X . shape ) == 4 : window += ( 0 , ) asteps += ( 1 , ) image_view = rolling_window ( X , window , asteps ) new_shape = image_view . shape # this makes a copy of the array ? can we do without reshaping ? image_view = image_view . reshape ( ...
def global_closeness_centrality ( g , node = None , normalize = True ) : """Calculates global closeness centrality for one or all nodes in the network . See : func : ` . node _ global _ closeness _ centrality ` for more information . Parameters g : networkx . Graph normalize : boolean If True , normalizes...
if not node : C = { } for node in g . nodes ( ) : C [ node ] = global_closeness_centrality ( g , node , normalize = normalize ) return C values = nx . shortest_path_length ( g , node ) . values ( ) c = sum ( [ 1. / pl for pl in values if pl != 0. ] ) / len ( g ) if normalize : ac = 0 for sg ...
def vm_created ( name , vm_name , cpu , memory , image , version , interfaces , disks , scsi_devices , serial_ports , datacenter , datastore , placement , ide_controllers = None , sata_controllers = None , cd_dvd_drives = None , advanced_configs = None , power_on = False ) : '''Creates a virtual machine with the gi...
result = { 'name' : name , 'result' : None , 'changes' : { } , 'comment' : '' } if __opts__ [ 'test' ] : result [ 'comment' ] = 'Virtual machine {0} will be created' . format ( vm_name ) return result service_instance = __salt__ [ 'vsphere.get_service_instance_via_proxy' ] ( ) try : info = __salt__ [ 'vsphe...
def _ParseInformationalOptions ( self , options ) : """Parses the informational options . Args : options ( argparse . Namespace ) : command line arguments ."""
self . _debug_mode = getattr ( options , 'debug' , False ) self . _quiet_mode = getattr ( options , 'quiet' , False ) if self . _debug_mode and self . _quiet_mode : logger . warning ( 'Cannot use debug and quiet mode at the same time, defaulting to ' 'debug output.' )
def username ( self , username ) : """Set username . . . note : : The username will be converted to lowercase . The display name will contain the original version ."""
validate_username ( username ) self . _username = username . lower ( ) self . _displayname = username
def on_property_change ( self , name , old_value , new_value ) : # pylint : disable = W0613 """A component property has been updated : param name : Name of the property : param old _ value : Previous value of the property : param new _ value : New value of the property"""
if name in self . _keys : try : if self . update_filter ( ) : # This is a key for the filter and the filter has changed # = > Force the handler to update its dependency self . _reset ( ) except ValueError : # Invalid filter : clear all references , this will invalidate # the comp...
def scaffold ( args ) : """% prog scaffold contigs . fasta MP * . fastq Run SSPACE scaffolding ."""
p = OptionParser ( scaffold . __doc__ ) p . set_aligner ( aligner = "bwa" ) p . set_home ( "sspace" ) p . set_cpus ( ) opts , args = p . parse_args ( args ) if len ( args ) < 1 : sys . exit ( not p . print_help ( ) ) contigs = args [ 0 ] libtxt = write_libraries ( args [ 1 : ] , aligner = opts . aligner ) # Require...
def get_connection_ip_list ( as_wmi_format = False , server = _DEFAULT_SERVER ) : '''Get the IPGrant list for the SMTP virtual server . : param bool as _ wmi _ format : Returns the connection IPs as a list in the format WMI expects . : param str server : The SMTP server name . : return : A dictionary of the I...
ret = dict ( ) setting = 'IPGrant' reg_separator = r',\s*' if as_wmi_format : ret = list ( ) addresses = _get_wmi_setting ( 'IIsIPSecuritySetting' , setting , server ) # WMI returns the addresses as a tuple of unicode strings , each representing # an address / subnet pair . Remove extra spaces that may be present ....
def in6_addrtovendor ( addr ) : """Extract the MAC address from a modified EUI - 64 constructed IPv6 address provided and use the IANA oui . txt file to get the vendor . The database used for the conversion is the one loaded by Scapy from a Wireshark installation if discovered in a well - known location . N...
mac = in6_addrtomac ( addr ) if mac is None or conf . manufdb is None : return None res = conf . manufdb . _get_manuf ( mac ) if len ( res ) == 17 and res . count ( ':' ) != 5 : # Mac address , i . e . unknown res = "UNKNOWN" return res
def writetb_parts ( path , kvs , num_per_file , ** kw ) : """Write typedbytes sequence files to HDFS given an iterator of KeyValue pairs This is useful when a task is CPU bound and wish to break up its inputs into pieces smaller than the HDFS block size . This causes Hadoop to launch one Map task per file . A...
out = [ ] part_num = 0 def _flush ( out , part_num ) : hadoopy . writetb ( '%s/part-%.5d' % ( path , part_num ) , out , ** kw ) return [ ] , part_num + 1 for kv in kvs : out . append ( kv ) if len ( out ) >= num_per_file : out , part_num = _flush ( out , part_num ) if out : out , part_num = ...
def touch ( fpath , times = None , verbose = True ) : r"""Creates file if it doesnt exist Args : fpath ( str ) : file path times ( None ) : verbose ( bool ) : Example : > > > # DISABLE _ DOCTEST > > > from utool . util _ path import * # NOQA > > > fpath = ' ? ' > > > times = None > > > verbose =...
try : if verbose : print ( '[util_path] touching %r' % fpath ) with open ( fpath , 'a' ) : os . utime ( fpath , times ) except Exception as ex : import utool utool . printex ( ex , 'touch %s' % fpath ) raise return fpath
def search_orbit ( ** kwargs ) : '''Query based on orbital elements : http : / / asterank . com / api / skymorph / search _ orbit ? < params > epochEpoch ( [ M ] JD or ISO ) ecceccentricity perPerihelion distance ( AU ) per _ datePerihelion date ( [ M ] JD or ISO ) omLongitude of ascending node ( deg ) ...
base_url = "http://asterank.com/api/skymorph/search_orbit?" for key in kwargs : base_url += str ( key ) + "=" + kwargs [ key ] + "&" # remove the unnecessary & at the end base_url = base_url [ : - 1 ] return dispatch_http_get ( base_url )
def set_integrity_location ( self , integrity_extent ) : # type : ( int ) - > None '''A method to set the location of the UDF Integrity sequence that this descriptor references . Parameters : integrity _ extent - The new extent that the UDF Integrity sequence should start at . Returns : Nothing .'''
if not self . _initialized : raise pycdlibexception . PyCdlibInternalError ( 'UDF Logical Volume Descriptor not initialized' ) self . integrity_sequence_extent = integrity_extent
def update_handler_result ( self , ddoc_id , handler_name , doc_id = None , data = None , ** params ) : """Creates or updates a document from the specified database based on the update handler function provided . Update handlers are used , for example , to provide server - side modification timestamps , and doc...
ddoc = DesignDocument ( self , ddoc_id ) if doc_id : resp = self . r_session . put ( '/' . join ( [ ddoc . document_url , '_update' , handler_name , doc_id ] ) , params = params , data = data ) else : resp = self . r_session . post ( '/' . join ( [ ddoc . document_url , '_update' , handler_name ] ) , params = p...
def most_recent_submission ( project , group ) : """Return the most recent submission for the user and project id ."""
return ( Submission . query_by ( project = project , group = group ) . order_by ( Submission . created_at . desc ( ) ) . first ( ) )
def getStore ( self ) : """return the store in a dict format"""
store = self . _store . getStore ( ) for priv in self . privates : v = getattr ( self , priv ) if v : store [ priv ] = v return store
def API520_F2 ( k , P1 , P2 ) : r'''Calculates coefficient F2 for subcritical flow for use in API 520 subcritical flow relief valve sizing . . . math : : F _ 2 = \ sqrt { \ left ( \ frac { k } { k - 1 } \ right ) r ^ \ frac { 2 } { k } \ left [ \ frac { 1 - r ^ \ frac { k - 1 } { k } } { 1 - r } \ right ] }...
r = P2 / P1 return ( k / ( k - 1 ) * r ** ( 2. / k ) * ( ( 1 - r ** ( ( k - 1. ) / k ) ) / ( 1. - r ) ) ) ** 0.5
def fetch_cached ( task_id , wait = 0 , broker = None ) : """Return the processed task from the cache backend"""
if not broker : broker = get_broker ( ) start = time ( ) while True : r = broker . cache . get ( '{}:{}' . format ( broker . list_key , task_id ) ) if r : task = SignedPackage . loads ( r ) t = Task ( id = task [ 'id' ] , name = task [ 'name' ] , func = task [ 'func' ] , hook = task . get ( ...
def dataset_status ( self , dataset ) : """call to get the status of a dataset from the API Parameters dataset : the string identified of the dataset should be in format [ owner ] / [ dataset - name ]"""
if dataset is None : raise ValueError ( 'A dataset must be specified' ) if '/' in dataset : self . validate_dataset_string ( dataset ) dataset_urls = dataset . split ( '/' ) owner_slug = dataset_urls [ 0 ] dataset_slug = dataset_urls [ 1 ] else : owner_slug = self . get_config_value ( self . CON...
def _inputcooker_store ( self , char ) : """Put the cooked data in the correct queue"""
if self . sb : self . sbdataq = self . sbdataq + char else : self . inputcooker_store_queue ( char )
def contains ( self , x , ctrs , kdtree = None ) : """Check if the set of balls contains ` x ` . Uses a K - D Tree to perform the search if provided ."""
return self . overlap ( x , ctrs , kdtree = kdtree ) > 0
def sporco_cupy_patch_module ( name , attrib = None ) : """Create a copy of the named sporco module , patch it to replace numpy with cupy , and register it in ` ` sys . modules ` ` . Parameters name : string Name of source module attrib : dict or None , optional ( default None ) Dict of attribute names ...
# Patched module name is constructed from source module name # by replacing ' sporco . ' with ' sporco . cupy . ' pname = re . sub ( '^sporco.' , 'sporco.cupy.' , name ) # Attribute dict always maps cupy module to ' np ' attribute in # patched module if attrib is None : attrib = { } attrib . update ( { 'np' : cp } ...
def pluck ( obj , selector , default = None , skipmissing = True ) : """Alternative implementation of ` plucks ` that accepts more complex selectors . It ' s a wrapper around ` pluckable ` , so a ` selector ` can be any valid Python expression comprising attribute getters ( ` ` . attr ` ` ) and item getters (...
if not selector : return obj if selector [ 0 ] != '[' : selector = '.%s' % selector wrapped_obj = pluckable ( obj , default = default , skipmissing = skipmissing , inplace = True ) return eval ( "wrapped_obj%s.value" % selector )
def get_symop ( self ) : """Returns all symmetry operations ( including inversions and subtranslations ) as a sequence of ( rotation , translation ) tuples ."""
symop = [ ] parities = [ 1 ] if self . centrosymmetric : parities . append ( - 1 ) for parity in parities : for subtrans in self . subtrans : for rot , trans in zip ( self . rotations , self . translations ) : newtrans = np . mod ( trans + subtrans , 1 ) symop . append ( ( parity...
def init ( options = None , ini_paths = None , argv = None , strict = False , ** parser_kwargs ) : """Initialize singleton config and read / parse configuration . : keyword bool strict : when true , will error out on invalid arguments ( default behavior is to ignore them ) : returns : the loaded configuration...
global SINGLETON SINGLETON = Config ( options = options , ini_paths = ini_paths , argv = argv , ** parser_kwargs ) SINGLETON . parse ( argv , strict = strict ) return SINGLETON
def get_state_actions ( self , state , ** kwargs ) : """Restarts instance containers . : param state : Configuration state . : type state : dockermap . map . state . ConfigState : param kwargs : Additional keyword arguments . : return : Actions on the client , map , and configurations . : rtype : list [ d...
if ( state . config_id . config_type == ItemType . CONTAINER and state . base_state != State . ABSENT and not state . state_flags & StateFlags . INITIAL ) : actions = [ ItemAction ( state , DerivedAction . RESTART_CONTAINER , extra_data = kwargs ) ] if self . restart_exec_commands : actions . append ( I...
def excepthook ( self , etype , evalue , etb ) : """Handle an uncaught exception . We always forward the exception on to whatever ` sys . excepthook ` was present upon setup . However , if the exception is a KeyboardInterrupt , we additionally kill ourselves with an uncaught SIGINT , so that invoking programs...
self . inner_excepthook ( etype , evalue , etb ) if issubclass ( etype , KeyboardInterrupt ) : # Don ' t try this at home , kids . On some systems os . kill ( 0 , . . . ) # signals our entire progress group , which is not what we want , # so we use os . getpid ( ) . signal . signal ( signal . SIGINT , signal . SIG_...
def lyr_proj ( lyr , t_srs , preserve_fields = True ) : """Reproject an OGR layer"""
# Need to check t _ srs s_srs = lyr . GetSpatialRef ( ) cT = osr . CoordinateTransformation ( s_srs , t_srs ) # Do everything in memory drv = ogr . GetDriverByName ( 'Memory' ) # Might want to save clipped , warped shp to disk ? # create the output layer # drv = ogr . GetDriverByName ( ' ESRI Shapefile ' ) # out _ fn =...
def reset_training_state ( self , dones , batch_info ) : """A hook for a model to react when during training episode is finished"""
for idx , done in enumerate ( dones ) : if done > 0.5 : self . processes [ idx ] . reset ( )
async def forward ( self , chat_id , disable_notification = None ) -> Message : """Forward this message : param chat _ id : : param disable _ notification : : return :"""
return await self . bot . forward_message ( chat_id , self . chat . id , self . message_id , disable_notification )
def next_frame_l2 ( ) : """Basic conv model with L2 modality ."""
hparams = next_frame_basic_deterministic ( ) hparams . loss [ "targets" ] = modalities . video_l2_loss hparams . top [ "targets" ] = modalities . video_l1_top hparams . video_modality_loss_cutoff = 2.4 return hparams
def getLimit ( self , alpha , upper = True ) : """Evaluate the limits corresponding to a C . L . of ( 1 - alpha ) % . Parameters alpha : limit confidence level . upper : upper or lower limits ."""
dlnl = onesided_cl_to_dlnl ( 1.0 - alpha ) return self . getDeltaLogLike ( dlnl , upper = upper )
def _set_tunnel_map ( self , v , load = False ) : """Setter method for tunnel _ map , mapped from YANG variable / interface / tunnel / tunnel _ map ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ tunnel _ map is considered as a private method . Backends ...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = tunnel_map . tunnel_map , is_container = 'container' , presence = False , yang_name = "tunnel-map" , rest_name = "map" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , register_paths = T...
def statistic_record ( self , desc = True , timeout = 3 , is_async = False , only_read = True , * keys ) : """Returns a list that each element is a dictionary of the statistic info of the cache item ."""
if len ( keys ) == 0 : records = self . _generate_statistic_records ( ) else : records = self . _generate_statistic_records_by_keys ( keys ) return sorted ( records , key = lambda t : t [ 'hit_counts' ] , reverse = desc )
def post_message ( self , message , duration = None , pause = True , style = "info" ) : """Post a message on the screen with Messenger . Arguments : message : The message to display . duration : The time until the message vanishes . ( Default : 2.55s ) pause : If True , the program waits until the message c...
if not duration : if not self . message_duration : duration = settings . DEFAULT_MESSAGE_DURATION else : duration = self . message_duration js_utils . post_message ( self . driver , message , duration , style = style ) if pause : duration = float ( duration ) + 0.15 time . sleep ( float ...
def sonTraceRootPath ( ) : """function for finding external location"""
import sonLib . bioio i = os . path . abspath ( sonLib . bioio . __file__ ) return os . path . split ( os . path . split ( os . path . split ( i ) [ 0 ] ) [ 0 ] ) [ 0 ]
def get_state ( self ) : """Create state from sensors and battery"""
# Include battery level in state battery = self . player . stats [ 'battery' ] / 100 # Create observation from sensor proximities # TODO : Have state persist , then update columns by ` sensed _ type ` # Multi - channel ; detecting ` items ` if len ( self . mode [ 'items' ] ) > 0 : observation = [ ] for sensor i...
def get_ldap ( cls , global_options = None ) : """Returns the ldap module . The unit test harness will assign a mock object to _ LDAPConfig . ldap . It is imperative that the ldap module not be imported anywhere else so that the unit tests will pass in the absence of python - ldap ."""
if cls . ldap is None : import ldap . filter # Support for python - ldap < 2.0.6 try : import ldap . dn except ImportError : from django_auth_ldap import dn ldap . dn = dn cls . ldap = ldap # Apply global LDAP options once if ( not cls . _ldap_configured ) and ( global_option...
def get ( self , key , default = None ) : """Get an item - return default ( None ) if not present"""
if key not in self . table : return default return self [ key ]
def cell_to_text ( self ) : """Return the text representation of a cell"""
if self . cell_type == 'markdown' : # Is an explicit region required ? if self . metadata or self . cell_reader ( self . fmt ) . read ( self . source ) [ 1 ] < len ( self . source ) : if self . metadata : region_start = [ '<!-- #region' ] if 'title' in self . metadata and '{' not in ...
def transformToNative ( obj ) : """Convert comma separated periods into tuples ."""
if obj . isNative : return obj obj . isNative = True if obj . value == '' : obj . value = [ ] return obj tzinfo = getTzid ( getattr ( obj , 'tzid_param' , None ) ) obj . value = [ stringToPeriod ( x , tzinfo ) for x in obj . value . split ( "," ) ] return obj
async def track_event ( event , state , service_name ) : """Store state of events in memory : param event : Event object : param state : EventState object : param service _ name : Name of service name"""
redis = await aioredis . create_redis ( ( EVENT_TRACKING_HOST , 6379 ) , loop = loop ) now = datetime . utcnow ( ) event_id = event . event_id tracking_data = json . dumps ( { "event_id" : event_id , "timestamp" : str ( now ) , "state" : state } ) await redis . rpush ( service_name , tracking_data ) redis . close ( ) a...
def Pipe ( self , * sequence , ** kwargs ) : """` Pipe ` runs any ` phi . dsl . Expression ` . Its highly inspired by Elixir ' s [ | > ( pipe ) ] ( https : / / hexdocs . pm / elixir / Kernel . html # % 7C % 3E / 2 ) operator . * * Arguments * * * * * * sequence * * : any variable amount of expressions . All exp...
state = kwargs . pop ( "refs" , { } ) return self . Seq ( * sequence , ** kwargs ) ( None , ** state )
def compute_pscale ( self , cd11 , cd21 ) : """Compute the pixel scale based on active WCS values ."""
return N . sqrt ( N . power ( cd11 , 2 ) + N . power ( cd21 , 2 ) ) * 3600.
def list_firmware_manifests ( self , ** kwargs ) : """List all manifests . : param int limit : number of manifests to retrieve : param str order : sort direction of manifests when ordered by time . ' desc ' or ' asc ' : param str after : get manifests after given ` image _ id ` : param dict filters : Dictio...
kwargs = self . _verify_sort_options ( kwargs ) kwargs = self . _verify_filters ( kwargs , FirmwareManifest , True ) api = self . _get_api ( update_service . DefaultApi ) return PaginatedResponse ( api . firmware_manifest_list , lwrap_type = FirmwareManifest , ** kwargs )
def calcRandW ( self , aLvlNow , pLvlNow ) : '''Calculates the interest factor and wage rate this period using each agent ' s capital stock to get the aggregate capital ratio . Parameters aLvlNow : [ np . array ] Agents ' current end - of - period assets . Elements of the list correspond to types in the e...
# Calculate aggregate savings AaggPrev = np . mean ( np . array ( aLvlNow ) ) / np . mean ( pLvlNow ) # End - of - period savings from last period # Calculate aggregate capital this period AggregateK = np . mean ( np . array ( aLvlNow ) ) # . . . becomes capital today # This version uses end - of - period assets and # ...
def filter ( self , exclude ) : """Return a HeaderSet excluding the headers in the exclude list ."""
filtered_headers = HeaderDict ( ) lowercased_ignore_list = [ x . lower ( ) for x in exclude ] for header , value in iteritems ( self ) : if header . lower ( ) not in lowercased_ignore_list : filtered_headers [ header ] = value return filtered_headers
def display ( fig = None , closefig = True , ** kwargs ) : """Convert a Matplotlib Figure to a Leaflet map . Embed in IPython notebook . Parameters fig : figure , default gcf ( ) Figure used to convert to map closefig : boolean , default True Close the current Figure"""
from IPython . display import HTML if fig is None : fig = plt . gcf ( ) if closefig : plt . close ( fig ) html = fig_to_html ( fig , ** kwargs ) # We embed everything in an iframe . iframe_html = '<iframe src="data:text/html;base64,{html}" width="{width}" height="{height}"></iframe>' . format ( html = base64 . ...
def QA_fetch_get_tdxtraderecord ( file ) : """QUANTAXIS 读取历史交易记录 通达信 历史成交 - 输出 - xlsfile - - 转换csvfile"""
try : with open ( './20180606.csv' , 'r' ) as f : l = csv . reader ( f ) data = [ item for item in l ] res = pd . DataFrame ( data [ 1 : ] , columns = data [ 0 ] ) return res except : raise IOError ( 'QA CANNOT READ THIS RECORD' )
def parse ( document , clean_html = True , unix_timestamp = False , encoding = None ) : """Parse a document and return a feedparser dictionary with attr key access . If clean _ html is False , the html in the feed will not be cleaned . If clean _ html is True , a sane version of lxml . html . clean . Cleaner wi...
if isinstance ( clean_html , bool ) : cleaner = default_cleaner if clean_html else fake_cleaner else : cleaner = clean_html result = feedparser . FeedParserDict ( ) result [ 'feed' ] = feedparser . FeedParserDict ( ) result [ 'entries' ] = [ ] result [ 'bozo' ] = 0 try : parser = SpeedParser ( document , cl...
def bots_update ( self , bot ) : """Update Bot : param bot : bot object to update : type bot : Bot"""
self . client . bots . __getattr__ ( bot . name ) . __call__ ( _method = "PUT" , _json = bot . to_json ( ) , _params = dict ( botName = bot . name ) )
def _run__http ( self , action , replace ) : """More complex HTTP query ."""
query = action [ 'query' ] # self . _ debug = True url = '{type}://{host}{path}' . format ( path = query [ 'path' ] , ** action ) content = None method = query . get ( 'method' , "get" ) . lower ( ) self . debug ( "{} {} url={}\n" , action [ 'type' ] , method , url ) if method == "post" : content = query [ 'content...