signature
stringlengths
29
44.1k
implementation
stringlengths
0
85.2k
def prune_indices ( self , transforms = None ) : """Return indices of pruned rows and columns as list . The return value has one of three possible forms : * a 1 - element list of row indices ( in case of 1D cube ) * 2 - element list of row and col indices ( in case of 2D cube ) * n - element list of tuples ...
if self . ndim >= 3 : # In case of a 3D cube , return list of tuples # ( of row and col pruned indices ) . return self . _prune_3d_indices ( transforms ) def prune_non_3d_indices ( transforms ) : row_margin = self . _pruning_base ( hs_dims = transforms , axis = self . row_direction_axis ) row_indices = self...
def start_engines ( opts , proc_mgr , proxy = None ) : '''Fire up the configured engines !'''
utils = salt . loader . utils ( opts , proxy = proxy ) if opts [ '__role' ] == 'master' : runners = salt . loader . runner ( opts , utils = utils ) else : runners = [ ] funcs = salt . loader . minion_mods ( opts , utils = utils , proxy = proxy ) engines = salt . loader . engines ( opts , funcs , runners , utils...
def get_create_index_sql ( self , index , table ) : """Returns the SQL to create an index on a table on this platform . : param index : The index : type index : Index : param table : The table : type table : Table or str : rtype : str"""
if isinstance ( table , Table ) : table = table . get_quoted_name ( self ) name = index . get_quoted_name ( self ) columns = index . get_quoted_columns ( self ) if not columns : raise DBALException ( 'Incomplete definition. "columns" required.' ) if index . is_primary ( ) : return self . get_create_primary_...
def root_indices ( sec_list ) : """Returns the index of all sections without a parent ."""
roots = [ ] for i , section in enumerate ( sec_list ) : sref = h . SectionRef ( sec = section ) # has _ parent returns a float . . . cast to bool if sref . has_parent ( ) < 0.9 : roots . append ( i ) return roots
def receive_message ( self ) : """Receive a message from the file ."""
with self . lock : assert self . can_receive_messages ( ) message_type = self . _read_message_type ( self . _file ) message = message_type ( self . _file , self ) self . _message_received ( message )
def write_files ( self , jdoc , output_dir ) : '''Writes all jdoc records into files . One file per schema plus index file .'''
# get all distinct schema names from jdoc : schemas = [ j for j in jdoc if j . object_type == 'schema' ] schemas = [ j for j in schemas if len ( [ x for x in jdoc if x . object_type != 'schema' and x . schema_name == j . object_name ] ) > 0 ] if not os . path . exists ( output_dir ) : os . makedirs ( output_dir ) t...
def _fetch_itemslist ( self , current_item ) : """Get a all available apis"""
if current_item . is_root : html = requests . get ( self . base_url ) . text soup = BeautifulSoup ( html , 'html.parser' ) for item_html in soup . select ( ".row .col-md-6" ) : try : label = item_html . select_one ( "h2" ) . text except Exception : continue yi...
def get_custom_metrics ( ) : """: return : mxnet metric object"""
_rse = mx . metric . create ( rse ) _rae = mx . metric . create ( rae ) _corr = mx . metric . create ( corr ) return mx . metric . create ( [ _rae , _rse , _corr ] )
def set_cache ( self , value ) : """Assign the cache in cache ."""
value . update ( self . cache ) return self . cache_backend . set ( self . cache_key , value )
def batch_predict ( training_dir , prediction_input_file , output_dir , mode , batch_size = 16 , shard_files = True , output_format = 'csv' , cloud = False ) : """Blocking versoin of batch _ predict . See documentation of batch _ prediction _ async ."""
job = batch_predict_async ( training_dir = training_dir , prediction_input_file = prediction_input_file , output_dir = output_dir , mode = mode , batch_size = batch_size , shard_files = shard_files , output_format = output_format , cloud = cloud ) job . wait ( ) print ( 'Batch predict: ' + str ( job . state ) )
def _get_requirements ( fname ) : """Create a list of requirements from the output of the pip freeze command saved in a text file ."""
packages = _read ( fname ) . split ( '\n' ) packages = ( p . strip ( ) for p in packages ) packages = ( p for p in packages if p and not p . startswith ( '#' ) ) return list ( packages )
def respond_from_question ( self , question , user_question , importance ) : """Copy the answer given in ` question ` to the logged in user ' s profile . : param question : A : class : ` ~ . Question ` instance to copy . : param user _ question : An instance of : class : ` ~ . UserQuestion ` that correspond...
option_index = user_question . answer_text_to_option [ question . their_answer ] . id self . respond ( question . id , [ option_index ] , [ option_index ] , importance )
def open_array ( store = None , mode = 'a' , shape = None , chunks = True , dtype = None , compressor = 'default' , fill_value = 0 , order = 'C' , synchronizer = None , filters = None , cache_metadata = True , cache_attrs = True , path = None , object_codec = None , chunk_store = None , ** kwargs ) : """Open an arr...
# use same mode semantics as h5py # r : read only , must exist # r + : read / write , must exist # w : create , delete if exists # w - or x : create , fail if exists # a : read / write if exists , create otherwise ( default ) # handle polymorphic store arg clobber = mode == 'w' store = normalize_store_arg ( store , clo...
def generate_matches ( self , nodes ) : """Generator yielding matches for a sequence of nodes . Args : nodes : sequence of nodes Yields : ( count , results ) tuples where : count : the match comprises nodes [ : count ] ; results : dict containing named submatches ."""
if self . content is None : # Shortcut for special case ( see _ _ init _ _ . _ _ doc _ _ ) for count in xrange ( self . min , 1 + min ( len ( nodes ) , self . max ) ) : r = { } if self . name : r [ self . name ] = nodes [ : count ] yield count , r elif self . name == "bare_name" ...
def _api ( fn ) : """API decorator for common tests ( sessions open , etc . ) and throttle limitation ( calls per second ) ."""
@ _functools . wraps ( fn ) def _fn ( self , * args , ** kwargs ) : self . _throttle_wait ( ) if not self . _SID : raise RuntimeError ( 'Session closed. Invoke connect() before.' ) return fn ( self , * args , ** kwargs ) return _fn
def bq ( line , cell = None ) : """Implements the bq cell magic for ipython notebooks . The supported syntax is : % % bq < command > [ < args > ] < cell > or : % bq < command > [ < args > ] Use % bq - - help for a list of commands , or % bq < command > - - help for help on a specific command ."""
return google . datalab . utils . commands . handle_magic_line ( line , cell , _bigquery_parser )
def inject ( self , function = None , ** names ) : """Inject dependencies into ` funtion ` ' s arguments when called . > > > @ injector . inject . . . def use _ dependency ( dependency _ name ) : > > > use _ dependency ( ) The ` Injector ` will look for registered dependencies matching named arguments and...
def decorator ( function ) : @ wraps ( function ) def wrapper ( * args , ** kwargs ) : sig = signature ( function ) params = sig . parameters bound = sig . bind_partial ( * args , ** kwargs ) bound . apply_defaults ( ) injected_kwargs = { } for key , value in para...
def term_symbols ( self ) : """All possible Russell - Saunders term symbol of the Element eg . L = 1 , n _ e = 2 ( s2) returns [ [ ' 1D2 ' ] , [ ' 3P0 ' , ' 3P1 ' , ' 3P2 ' ] , [ ' 1S0 ' ] ]"""
L_symbols = 'SPDFGHIKLMNOQRTUVWXYZ' L , v_e = self . valence # for one electron in subshell L ml = list ( range ( - L , L + 1 ) ) ms = [ 1 / 2 , - 1 / 2 ] # all possible configurations of ml , ms for one e in subshell L ml_ms = list ( product ( ml , ms ) ) # Number of possible configurations for r electrons in subshell...
def make_frame ( fig , ax , plot_x : np . ndarray , plot_y : np . ndarray , frame_num : int , bodies : List [ str ] , plot_colors : Dict [ str , str ] , markersize_tbl : Dict [ str , float ] , fname : str ) : """Make a series of frames of the planetary orbits that can be assembled into a movie . q is a Nx3B array...
# Clear the axis ax . clear ( ) ax . set_title ( f'Inner Planetary Orbits in 2018' ) ax . set_xlabel ( 'x in J2000.0 Frame; Astronomical Units (au)' ) ax . set_ylabel ( 'y in J2000.0 Frame; Astronomical Units (au)' ) # Scale and tick size a = 2.0 da = 1.0 ticks = np . arange ( - a , a + da , da ) # Set limits and ticks...
def read_block ( self , size , from_date = None ) : """Read items and return them in blocks . : param from _ date : start date for incremental reading . : param size : block size . : return : next block of items when any available . : raises ValueError : ` metadata _ _ timestamp ` field not found in index ...
search_query = self . _build_search_query ( from_date ) hits_block = [ ] for hit in helpers . scan ( self . _es_conn , search_query , scroll = '300m' , index = self . _es_index , preserve_order = True ) : hits_block . append ( hit ) if len ( hits_block ) % size == 0 : yield hits_block # Reset hi...
def toc ( self ) : """End collecting for current batch and return results . Call after computation of current batch . Returns res : list of"""
if not self . activated : return [ ] for exe in self . exes : for array in exe . arg_arrays : array . wait_to_read ( ) for array in exe . aux_arrays : array . wait_to_read ( ) for exe in self . exes : for name , array in zip ( exe . _symbol . list_arguments ( ) , exe . arg_arrays ) : ...
def set_servo_angle ( self , goalangle , goaltime , led ) : """Sets the servo angle ( in degrees ) Enable torque using torque _ on function before calling this Args : goalangle ( int ) : The desired angle in degrees , range - 150 to 150 goaltime ( int ) : the time taken to move from present position to go...
if ( self . servomodel == 0x06 ) or ( self . servomodel == 0x04 ) : goalposition = scale ( goalangle , - 159.9 , 159.6 , 10627 , 22129 ) else : goalposition = scale ( goalangle , - 150 , 150 , 21 , 1002 ) self . set_servo_position ( goalposition , goaltime , led )
def walk_callbacks ( obj , func , log = None ) : """Call func ( callback , args ) for all callbacks and keep only those callbacks for which the function returns True ."""
callbacks = obj . _callbacks if isinstance ( callbacks , Node ) : node = callbacks try : if not func ( node . data , node . extra ) : obj . _callbacks = None except Exception : if log is None : log = logging . get_logger ( ) log . exception ( 'uncaught excepti...
def VersionPath ( ) : """Returns a path to version . ini ."""
# Try to get a version . ini . It should be in the resources if the code # was packed with " pip sdist " . It will be 2 levels up from grr _ response _ core # if the code was installed via " pip install - e " . version_ini = ( package . ResourcePath ( "grr-response-core" , "version.ini" ) or package . ResourcePath ( "g...
def gradient_descent ( self , start_x = None , tolerance = 1.0e-6 ) : """Optimise value of x using gradient descent"""
if start_x is None : start_x = self . _analytical_fitter . fit ( self . _c ) return optimise_gradient_descent ( start_x , self . _a , self . _c , tolerance )
def _config_create ( self ) : """- - genconf"""
# Create ~ / . config / urlscan / config . json if if doesn ' t exist if not exists ( self . conf ) : try : # Python 2/3 compatible recursive directory creation os . makedirs ( dirname ( expanduser ( self . conf ) ) ) except OSError as err : if errno . EEXIST != err . errno : raise ...
def from_stream ( cls , stream , marker_code , offset ) : """Return a generic | _ Marker | instance for the marker at * offset * in * stream * having * marker _ code * ."""
if JPEG_MARKER_CODE . is_standalone ( marker_code ) : segment_length = 0 else : segment_length = stream . read_short ( offset ) return cls ( marker_code , offset , segment_length )
def audiosamples ( language , word , key = '' ) : '''Returns a list of URLs to suitable audiosamples for a given word .'''
from lltk . audiosamples import forvo , google urls = [ ] urls += forvo ( language , word , key ) urls += google ( language , word ) return urls
def makedirs ( * args , ** kwargs ) : """Wrapper around os . makedirs that doesn ' t raise an exception if the directory already exists ."""
try : os . makedirs ( * args , ** kwargs ) except OSError as ex : if ex . errno != errno . EEXIST : raise
def per_event_source_id ( event_space ) : """: return : a seeder function that returns an event ' s source id only if that event ' s source space equals to ` ` event _ space ` ` ."""
def f ( event ) : if is_event ( event ) : v = peel ( event ) if v [ 'source' ] [ 'space' ] == event_space : return v [ 'source' ] [ 'id' ] else : return None else : return None return _wrap_none ( f )
def unify ( t1 , t2 ) : """Unify the two types t1 and t2. Makes the types t1 and t2 the same . Args : t1 : The first type to be made equivalent t2 : The second type to be be equivalent Returns : None Raises : InferenceError : Raised if the types cannot be unified ."""
a = prune ( t1 ) b = prune ( t2 ) if isinstance ( a , TypeVariable ) : if a != b : if occurs_in_type ( a , b ) : raise InferenceError ( "recursive unification" ) a . instance = b elif isinstance ( b , TypeVariable ) : unify ( b , a ) elif isinstance ( a , TypeOperator ) and a . name ...
def _build_arguments ( self ) : """build arguments for command ."""
self . _parser . add_argument ( '-a' , '--alias' , required = False , default = 'default' , type = str , help = 'registry alias created in freight-forwarder.yml. Example: tune_dev' )
def replace_version ( self , other , logger ) : """True if self can safely replace other based on version numbers only - snapshot and branch tags are ignored"""
if other . library_name != self . library_name : logger . debug ( 'not replacable: {} != {} ()' . format ( other . library_name , self . library_name , other . filename ) ) return False elif int ( other . major_version ) != int ( self . major_version ) : logger . debug ( 'not replacable: {} != {} ({})' . fo...
def to_strings ( self , resource ) : """Dumps the all resources reachable from the given resource to a map of string representations using the specified content _ type ( defaults to CSV ) . : returns : dictionary mapping resource member classes to string representations"""
collections = self . __collect ( resource ) # Build a map of representations . rpr_map = OrderedDict ( ) for ( mb_cls , coll ) in iteritems_ ( collections ) : strm = NativeIO ( 'w' ) dump_resource ( coll , strm , content_type = self . __content_type ) rpr_map [ mb_cls ] = strm . getvalue ( ) return rpr_map
def parameters_dict ( self ) : """Get the tool parameters as a simple dictionary : return : The tool parameters"""
d = { } for k , v in self . __dict__ . items ( ) : if not k . startswith ( "_" ) : d [ k ] = v return d
def set_driver ( self , driver = None ) : """Defines the driver that is used to recognize prompts and implement behavior depending on the remote system . The driver argument may be an instance of a protocols . drivers . Driver subclass , a known driver name ( string ) , or None . If the driver argument is N...
if driver is None : self . manual_driver = None elif isinstance ( driver , str ) : if driver not in driver_map : raise TypeError ( 'no such driver:' + repr ( driver ) ) self . manual_driver = driver_map [ driver ] elif isinstance ( driver , Driver ) : self . manual_driver = driver else : rai...
def _color_im_callback ( self , msg ) : """Callback for handling textures ( greyscale images ) ."""
try : data = self . _bridge . imgmsg_to_cv2 ( msg ) if np . max ( data ) > 255.0 : data = 255.0 * data / 1200.0 # Experimentally set value for white data = np . clip ( data , 0. , 255.0 ) . astype ( np . uint8 ) gsimage = GrayscaleImage ( data , frame = self . _frame ) self . _cur_co...
def from_array ( array ) : """Deserialize a new Game from a given dictionary . : return : new Game instance . : rtype : Game"""
if array is None or not array : return None # end if assert_type_or_raise ( array , dict , parameter_name = "array" ) from pytgbot . api_types . receivable . media import Animation from pytgbot . api_types . receivable . media import MessageEntity from pytgbot . api_types . receivable . media import PhotoSize data ...
def gen_checkbox_edit ( sig_dic ) : '''for checkbox'''
edit_wuneisheshi = '''<label for="{0}"><span> <a class="glyphicon glyphicon-star" style="color: red;font-size: xx-small;"> </a>{1}</span> ''' . format ( sig_dic [ 'en' ] , sig_dic [ 'zh' ] ) dic_tmp = sig_dic [ 'dic' ] for key in dic_tmp . keys ( ) : tmp_str = ''' <input id="{0}" name="{0}" ...
def find_ip4_by_id ( self , id_ip ) : """Get an IP by ID : param id _ ip : IP identifier . Integer value and greater than zero . : return : Dictionary with the following structure : { ips { id : < id _ ip4 > , oct1 : < oct1 > , oct2 : < oct2 > , oct3 : < oct3 > , oct4 : < oct4 > , equipamento : [ { ...
if not is_valid_int_param ( id_ip ) : raise InvalidParameterError ( u'Ip identifier is invalid or was not informed.' ) url = 'ip/get/' + str ( id_ip ) + "/" code , xml = self . submit ( None , 'GET' , url ) return self . response ( code , xml )
def language ( lang_code ) : '''Force a given language'''
ctx = None if not request : ctx = current_app . test_request_context ( ) ctx . push ( ) backup = g . get ( 'lang_code' ) g . lang_code = lang_code refresh ( ) yield g . lang_code = backup if ctx : ctx . pop ( ) refresh ( )
def off ( self , group = None ) : """Switch lights off . If group ( 1-4 ) is not specified , all four groups will be switched off ."""
if group is None or group == 0 : self . _send_to_group ( group , send_on = False , command = "all_off" ) return self . _send_to_group ( group , per_group = True , send_on = False , rgbw_cmd = self . RGBW_GROUP_X_OFF , white_cmd = self . WHITE_GROUP_X_OFF )
def event_matches ( self , event , simple = False , keys = False ) : """Get list of matches played at an event . : param event : Event key to get data on . : param keys : Return list of match keys only rather than full data on every match . : param simple : Get only vital data . : return : List of string ke...
if keys : return self . _get ( 'event/%s/matches/keys' % event ) else : return [ Match ( raw ) for raw in self . _get ( 'event/%s/matches%s' % ( event , '/simple' if simple else '' ) ) ]
def _optimize ( self , maxIter = 1000 , c1 = 1.193 , c2 = 1.193 , lookback = 0.25 , standard_dev = None ) : """: param maxIter : maximum number of swarm iterations : param c1 : social weight : param c2 : personal weight : param lookback : how many particles to assess when considering convergence : param sta...
gBests = [ ] for swarm in self . _sample ( maxIter , c1 , c2 , lookback , standard_dev ) : # swarms . append ( swarm ) gBests . append ( self . _gbest . copy ( ) ) return gBests
def tolerant_metaphone_processor ( words ) : '''Double metaphone word processor slightly modified so that when no words are returned by the algorithm , the original word is returned .'''
for word in words : r = 0 for w in double_metaphone ( word ) : if w : w = w . strip ( ) if w : r += 1 yield w if not r : yield word
def ScanForWindowsVolume ( self , source_path ) : """Scans for a Windows volume . Args : source _ path ( str ) : source path . Returns : bool : True if a Windows volume was found . Raises : ScannerError : if the source path does not exists , or if the source path is not a file or directory , or if the...
windows_path_specs = self . GetBasePathSpecs ( source_path ) if ( not windows_path_specs or self . _source_type == definitions . SOURCE_TYPE_FILE ) : return False file_system_path_spec = windows_path_specs [ 0 ] self . _file_system = resolver . Resolver . OpenFileSystem ( file_system_path_spec ) if file_system_path...
def handle_read ( self ) : """We got some output from a remote shell , this is one of the state machine"""
if self . state == STATE_DEAD : return global nr_handle_read nr_handle_read += 1 new_data = self . _handle_read_chunk ( ) if self . debug : self . print_debug ( b'==> ' + new_data ) if self . handle_read_fast_case ( self . read_buffer ) : return lf_pos = new_data . find ( b'\n' ) if lf_pos >= 0 : # Optimiza...
def ip_v4 ( self , with_port : bool = False ) -> str : """Generate a random IPv4 address . : param with _ port : Add port to IP . : return : Random IPv4 address . : Example : 19.121.223.58"""
ip = '.' . join ( str ( self . random . randint ( 0 , 255 ) ) for _ in range ( 4 ) ) if with_port : ip += ':{}' . format ( self . port ( ) ) return ip
def generate_json_docs ( module , pretty_print = False , user = None ) : """Return a JSON string format of a Pale module ' s documentation . This string can either be printed out , written to a file , or piped to some other tool . This method is a shorthand for calling ` generate _ doc _ dict ` and passing ...
indent = None separators = ( ',' , ':' ) if pretty_print : indent = 4 separators = ( ',' , ': ' ) module_doc_dict = generate_doc_dict ( module , user ) json_str = json . dumps ( module_doc_dict , indent = indent , separators = separators ) return json_str
def _compute_magnitude_scaling_term ( self , C , mag ) : """Compute magnitude scaling term as defined in equation 19 , page 2291 ( Tavakoli and Pezeshk , 2005)"""
assert mag <= 8.5 return C [ 'c1' ] + C [ 'c2' ] * mag + C [ 'c3' ] * ( 8.5 - mag ) ** 2.5
def create_intent ( project_id , display_name , training_phrases_parts , message_texts ) : """Create an intent of the given intent type ."""
import dialogflow_v2 as dialogflow intents_client = dialogflow . IntentsClient ( ) parent = intents_client . project_agent_path ( project_id ) training_phrases = [ ] for training_phrases_part in training_phrases_parts : part = dialogflow . types . Intent . TrainingPhrase . Part ( text = training_phrases_part ) ...
def get_lead ( self , lead_id ) : """Get a specific lead saved on your account . : param lead _ id : Id of the lead to search . Must be defined . : return : Lead found as a dict ."""
params = self . base_params endpoint = self . base_endpoint . format ( 'leads/' + str ( lead_id ) ) return self . _query_hunter ( endpoint , params )
async def get_final_destination ( self ) : """Get a list of final destinations for a stop ."""
dest = [ ] await self . get_departures ( ) for departure in self . _departures : dep = { } dep [ 'line' ] = departure . get ( 'line' ) dep [ 'destination' ] = departure . get ( 'destination' ) dest . append ( dep ) return [ dict ( t ) for t in { tuple ( d . items ( ) ) for d in dest } ]
def result_key_for ( self , op_name ) : """Checks for the presence of a ` ` result _ key ` ` , which defines what data should make up an instance . Returns ` ` None ` ` if there is no ` ` result _ key ` ` . : param op _ name : The operation name to look for the ` ` result _ key ` ` in . : type op _ name : s...
ops = self . resource_data . get ( 'operations' , { } ) op = ops . get ( op_name , { } ) key = op . get ( 'result_key' , None ) return key
def _CalculateHashesFileEntry ( self , file_system , file_entry , parent_full_path , output_writer ) : """Recursive calculates hashes starting with the file entry . Args : file _ system ( dfvfs . FileSystem ) : file system . file _ entry ( dfvfs . FileEntry ) : file entry . parent _ full _ path ( str ) : fu...
# Since every file system implementation can have their own path # segment separator we are using JoinPath to be platform and file system # type independent . full_path = file_system . JoinPath ( [ parent_full_path , file_entry . name ] ) for data_stream in file_entry . data_streams : hash_value = self . _Calculate...
def request_transfer ( subject , recipient , comment ) : '''Initiate a transfer request'''
TransferPermission ( subject ) . test ( ) if recipient == ( subject . organization or subject . owner ) : raise ValueError ( 'Recipient should be different than the current owner' ) transfer = Transfer . objects . create ( owner = subject . organization or subject . owner , recipient = recipient , subject = subject...
def record ( self ) : # type : ( ) - > bytes '''Generate a string representing the Rock Ridge Extension Selector record . Parameters : None . Returns : String containing the Rock Ridge record .'''
if not self . _initialized : raise pycdlibexception . PyCdlibInternalError ( 'ES record not yet initialized!' ) return b'ES' + struct . pack ( '=BBB' , RRESRecord . length ( ) , SU_ENTRY_VERSION , self . extension_sequence )
def _check_elements_equal ( lst ) : """Returns true if all of the elements in the list are equal ."""
assert isinstance ( lst , list ) , "Input value must be a list." return not lst or lst . count ( lst [ 0 ] ) == len ( lst )
def if_else_action ( self , text , loc , arg ) : """Code executed after recognising if statement ' s else body"""
exshared . setpos ( loc , text ) if DEBUG > 0 : print ( "IF_ELSE:" , arg ) if DEBUG == 2 : self . symtab . display ( ) if DEBUG > 2 : return # jump to exit after all statements for true condition are executed self . label_number = self . label_stack . pop ( ) label = self . codegen . label (...
def find_content ( self , text ) : """Find content ."""
for m in self . pattern . finditer ( self . norm_nl ( text ) ) : self . evaluate ( m )
def schemas_access_for_csv_upload ( self ) : """This method exposes an API endpoint to get the schema access control settings for csv upload in this database"""
if not request . args . get ( 'db_id' ) : return json_error_response ( 'No database is allowed for your csv upload' ) db_id = int ( request . args . get ( 'db_id' ) ) database = ( db . session . query ( models . Database ) . filter_by ( id = db_id ) . one ( ) ) try : schemas_allowed = database . get_schema_acce...
def _checkIndentationIssue ( self , node , node_type , linenoDocstring ) : """Check whether a docstring have consistent indentations . @ param node : the node currently checks by pylint @ param node _ type : type of given node @ param linenoDocstring : line number the docstring begins"""
indentDocstring = node . col_offset and node . col_offset or 0 indentDocstring += len ( re . findall ( r'\n( *)"""' , node . as_string ( ) ) [ 0 ] ) linesDocstring = node . doc . lstrip ( "\n" ) . split ( "\n" ) for nline , lineDocstring in enumerate ( linesDocstring ) : if ( nline < len ( linesDocstring ) - 1 and ...
def serializePath ( pathObj , options ) : """Reserializes the path data with some cleanups ."""
# elliptical arc commands must have comma / wsp separating the coordinates # this fixes an issue outlined in Fix https : / / bugs . launchpad . net / scour / + bug / 412754 return '' . join ( [ cmd + scourCoordinates ( data , options , control_points = controlPoints ( cmd , data ) , flags = flags ( cmd , data ) ) for c...
def task ( name = None , t = INFO , * args , ** kwargs ) : """This decorator modifies current function such that its start , end , and duration is logged in console . If the task name is not given , it will attempt to infer it from the function name . Optionally , the decorator can log information into files ...
def c_run ( name , f , t , args , kwargs ) : def run ( * largs , ** lkwargs ) : thread = __get_current_thread ( ) old_name = __THREAD_PARAMS [ thread ] [ __THREAD_PARAMS_FNAME_KEY ] __THREAD_PARAMS [ thread ] [ __THREAD_PARAMS_FNAME_KEY ] = name r = log ( name , f , t , largs , lkwar...
def set_state ( self , state ) : """: param state : a boolean of true ( on ) or false ( ' off ' ) : return : nothing"""
if self . index ( ) == 0 : values = { "outlets" : [ { "desired_state" : { "powered" : state } } , { } ] } else : values = { "outlets" : [ { } , { "desired_state" : { "powered" : state } } ] } response = self . api_interface . set_device_state ( self , values , id_override = self . parent_id ( ) , type_override ...
def check_role ( self , identifiers , role_s , logical_operator ) : """: param identifiers : a collection of identifiers : type identifiers : subject _ abcs . IdentifierCollection : param role _ s : 1 . . N role identifiers : type role _ s : a String or Set of Strings : param logical _ operator : indicates ...
self . assert_realms_configured ( ) has_role_s = self . has_role_collective ( identifiers , role_s , logical_operator ) if not has_role_s : msg = "Subject does not have role(s) assigned." raise UnauthorizedException ( msg )
def set_ctype ( self , ctype , orig_ctype = None ) : """Set the selected content type . Will not override the value of the content type if that has already been determined . : param ctype : The content type string to set . : param orig _ ctype : The original content type , as found in the configuration ."""
if self . ctype is None : self . ctype = ctype self . orig_ctype = orig_ctype
def add_blackbox_or_builtin_call ( self , node , blackbox ) : # noqa : C901 """Processes a blackbox or builtin function when it is called . Nothing gets assigned to ret _ func _ foo in the builtin / blackbox case . Increments self . function _ call _ index each time it is called , we can refer to it as N in the...
self . function_call_index += 1 saved_function_call_index = self . function_call_index self . undecided = False call_label_visitor = LabelVisitor ( ) call_label_visitor . visit ( node ) call_function_label = call_label_visitor . result [ : call_label_visitor . result . find ( '(' ) ] # Check if function call matches a ...
def kafka_install ( self ) : """kafka download and install : return :"""
with cd ( '/tmp' ) : if not exists ( 'kafka.tgz' ) : sudo ( 'wget {0} -O kafka.tgz' . format ( bigdata_conf . kafka_download_url ) ) sudo ( 'tar -zxf kafka.tgz' ) sudo ( 'rm -rf {0}' . format ( bigdata_conf . kafka_home ) ) sudo ( 'mv kafka_* {0}' . format ( bigdata_conf . kafka_home ) )
def authorization_documents ( self ) : """: rtype : twilio . rest . preview . hosted _ numbers . authorization _ document . AuthorizationDocumentList"""
if self . _authorization_documents is None : self . _authorization_documents = AuthorizationDocumentList ( self ) return self . _authorization_documents
def __validate_simple_subfield ( self , parameter , field , segment_list , _segment_index = 0 ) : """Verifies that a proposed subfield actually exists and is a simple field . Here , simple means it is not a MessageField ( nested ) . Args : parameter : String ; the ' . ' delimited name of the current field bei...
if _segment_index >= len ( segment_list ) : # In this case , the field is the final one , so should be simple type if isinstance ( field , messages . MessageField ) : field_class = field . __class__ . __name__ raise TypeError ( 'Can\'t use messages in path. Subfield %r was ' 'included but is a %s.' ...
def get_interval_timedelta ( self ) : """Spits out the timedelta in days ."""
now_datetime = timezone . now ( ) current_month_days = monthrange ( now_datetime . year , now_datetime . month ) [ 1 ] # Two weeks if self . interval == reminders_choices . INTERVAL_2_WEEKS : interval_timedelta = datetime . timedelta ( days = 14 ) # One month elif self . interval == reminders_choices . INTERVAL_ONE...
def delete_message ( current ) : """Delete a message . . code - block : : python # request : ' view ' : ' _ zops _ delete _ message , ' message _ key ' : key , # response : ' key ' : key , ' status ' : ' OK ' , ' code ' : 200"""
try : Message ( current ) . objects . get ( sender_id = current . user_id , key = current . input [ 'key' ] ) . delete ( ) current . output = { 'status' : 'Deleted' , 'code' : 200 , 'key' : current . input [ 'key' ] } except ObjectDoesNotExist : raise HTTPError ( 404 , "" )
def cublasDgemm ( handle , transa , transb , m , n , k , alpha , A , lda , B , ldb , beta , C , ldc ) : """Matrix - matrix product for real general matrix ."""
status = _libcublas . cublasDgemm_v2 ( handle , _CUBLAS_OP [ transa ] , _CUBLAS_OP [ transb ] , m , n , k , ctypes . byref ( ctypes . c_double ( alpha ) ) , int ( A ) , lda , int ( B ) , ldb , ctypes . byref ( ctypes . c_double ( beta ) ) , int ( C ) , ldc ) cublasCheckStatus ( status )
def send_exception ( self , code , exc_info = None , headers = None ) : "send an error response including a backtrace to the client"
if headers is None : headers = { } if not exc_info : exc_info = sys . exc_info ( ) self . send_error_msg ( code , traceback . format_exception ( * exc_info ) , headers )
def from_file ( cls , paramname , filename ) : """Returns a new MultipartParam object constructed from the local file at ` ` filename ` ` . ` ` filesize ` ` is determined by os . path . getsize ( ` ` filename ` ` ) ` ` filetype ` ` is determined by mimetypes . guess _ type ( ` ` filename ` ` ) [ 0] ` ` file...
return cls ( paramname , filename = os . path . basename ( filename ) , filetype = mimetypes . guess_type ( filename ) [ 0 ] , filesize = os . path . getsize ( filename ) , fileobj = open ( filename , "rb" ) )
def cross ( v1 , v2 ) : '''Computes the cross product of two vectors .'''
return ( v1 [ 1 ] * v2 [ 2 ] - v1 [ 2 ] * v2 [ 1 ] , v1 [ 2 ] * v2 [ 0 ] - v1 [ 0 ] * v2 [ 2 ] , v1 [ 0 ] * v2 [ 1 ] - v1 [ 1 ] * v2 [ 0 ] , )
def build_wheel ( ireq , sources , hashes = None , cache_dir = None ) : """Build a wheel file for the InstallRequirement object . An artifact is downloaded ( or read from cache ) . If the artifact is not a wheel , build one out of it . The dynamically built wheel is ephemeral ; do not depend on its existence ...
kwargs = _prepare_wheel_building_kwargs ( ireq ) finder = _get_finder ( sources , cache_dir = cache_dir ) # Not for upgrade , hash not required . Hashes are not required here even # when we provide them , because pip skips local wheel cache if we set it # to True . Hashes are checked later if we need to download the fi...
def geometrize_stops ( stops : List [ str ] , * , use_utm : bool = False ) -> DataFrame : """Given a stops DataFrame , convert it to a GeoPandas GeoDataFrame and return the result . Parameters stops : DataFrame A GTFS stops table use _ utm : boolean If ` ` True ` ` , then convert the output to local UTM...
import geopandas as gpd g = ( stops . assign ( geometry = lambda x : [ sg . Point ( p ) for p in x [ [ "stop_lon" , "stop_lat" ] ] . values ] ) . drop ( [ "stop_lon" , "stop_lat" ] , axis = 1 ) . pipe ( lambda x : gpd . GeoDataFrame ( x , crs = cs . WGS84 ) ) ) if use_utm : lat , lon = stops . loc [ 0 , [ "stop_lat...
def get_gradient ( self , value , colors , upper_limit = 100 ) : """Map a value to a color : param value : Some value : return : A Hex color code"""
index = int ( self . percentage ( value , upper_limit ) ) if index >= len ( colors ) : return colors [ - 1 ] elif index < 0 : return colors [ 0 ] else : return colors [ index ]
def switch_state_machine_execution_engine ( self , new_state_machine_execution_engine ) : """Switch the state machine execution engine the main window controller listens to . : param new _ state _ machine _ execution _ engine : the new state machine execution engine for this controller : return :"""
# relieve old one self . relieve_model ( self . state_machine_execution_model ) # register new self . state_machine_execution_model = new_state_machine_execution_engine self . observe_model ( self . state_machine_execution_model )
def get_playlist ( self , channel ) : """Return the playlist for the given channel : param channel : the channel : type channel : : class : ` models . Channel ` | : class : ` str ` : returns : the playlist : rtype : : class : ` m3u8 . M3U8 ` : raises : : class : ` requests . HTTPError ` if channel is offl...
if isinstance ( channel , models . Channel ) : channel = channel . name token , sig = self . get_channel_access_token ( channel ) params = { 'token' : token , 'sig' : sig , 'allow_audio_only' : True , 'allow_source' : True } r = self . usher_request ( 'GET' , 'channel/hls/%s.m3u8' % channel , params = params ) play...
def GetQueryValuesFromDict ( cls , d , version = sorted ( _SERVICE_MAP . keys ( ) ) [ - 1 ] ) : """Converts a dict of python types into a list of PQL types . Args : d : A dictionary of variable names to python types . version : A string identifying the Ad Manager version the values object is compatible with...
return [ { 'key' : key , 'value' : cls . GetValueRepresentation ( value , version ) } for key , value in d . iteritems ( ) ]
def flavor_rotation ( C_in , Uq , Uu , Ud , Ul , Ue , sm_parameters = True ) : """Gauge - invariant $ U ( 3 ) ^ 5 $ flavor rotation of all Wilson coefficients and SM parameters ."""
C = { } if sm_parameters : # shift of theta terms , see 0907.4763 C [ 'Thetas' ] = C_in [ 'Thetas' ] - 2 * argdet ( Uq ) + argdet ( Uu ) + argdet ( Ud ) C [ 'Theta' ] = C_in [ 'Theta' ] - 3 * argdet ( Uq ) - argdet ( Ul ) C [ 'Thetap' ] = ( C_in [ 'Thetap' ] - ( 1 / 6 ) * argdet ( Uq ) + ( 4 / 3 ) * argdet ...
def interleave ( * args ) : '''Interleaves the elements of the provided arrays . > > > a = [ ( 0 , 0 ) , ( 1 , 0 ) , ( 2 , 0 ) , ( 3 , 0 ) ] > > > b = [ ( 0 , 0 ) , ( 0 , 1 ) , ( 0 , 2 ) , ( 0 , 3 ) ] > > > interleave ( a , b ) [ ( 0 , 0 , 0 , 0 ) , ( 1 , 0 , 0 , 1 ) , ( 2 , 0 , 0 , 2 ) , ( 3 , 0 , 0 , 3 ) ...
result = [ ] for array in zip ( * args ) : result . append ( tuple ( flatten ( array ) ) ) return result
def utc_iso ( self , delimiter = 'T' , places = 0 ) : """Convert to an ISO 8601 string like ` ` 2014-01-18T01:35:38Z ` ` in UTC . If this time is an array of dates , then a sequence of strings is returned instead of a single string ."""
# " places " used to be the 1st argument , so continue to allow an # integer in that spot . TODO : deprecate this in Skyfield 2.0 # and remove it in 3.0. if isinstance ( delimiter , int ) : places = delimiter delimiter = 'T' if places : power_of_ten = 10 ** places offset = _half_second / power_of_ten ...
def get_area ( self , area_id , resolve_missing = False ) : """Get an area by its ID . : param area _ id : The area ID : type area _ id : Integer : param resolve _ missing : Query the Overpass API if the area is missing in the result set . : return : The area : rtype : overpy . Area : raises overpy . ex...
areas = self . get_areas ( area_id = area_id ) if len ( areas ) == 0 : if resolve_missing is False : raise exception . DataIncomplete ( "Resolve missing area is disabled" ) query = ( "\n" "[out:json];\n" "area({area_id});\n" "out body;\n" ) query = query . format ( area_id = area_id ) tmp_result...
def new_recruit ( self , match ) : """Dispatched to by notify ( ) . If a recruitment request has been issued , open a browser window for the a new participant ( in this case the person doing local debugging ) ."""
self . out . log ( "new recruitment request!" ) url = match . group ( 1 ) if self . proxy_port is not None : self . out . log ( "Using proxy port {}" . format ( self . proxy_port ) ) url = url . replace ( str ( get_config ( ) . get ( "base_port" ) ) , self . proxy_port ) new_webbrowser_profile ( ) . open ( url ...
def heptad_register ( self ) : """Returns the calculated register of the coiled coil and the fit quality ."""
base_reg = 'abcdefg' exp_base = base_reg * ( self . cc_len // 7 + 2 ) ave_ca_layers = self . calc_average_parameters ( self . ca_layers ) [ 0 ] [ : - 1 ] reg_fit = fit_heptad_register ( ave_ca_layers ) hep_pos = reg_fit [ 0 ] [ 0 ] return exp_base [ hep_pos : hep_pos + self . cc_len ] , reg_fit [ 0 ] [ 1 : ]
def AddAnalogShortIdMsecRecordNoStatus ( site_service , tag , time_value , msec , value ) : """This function will add an analog value to the specified eDNA service and tag , without an associated point status . : param site _ service : The site . service where data will be pushed : param tag : The eDNA tag to...
# Define all required variables in the correct ctypes format szService = c_char_p ( site_service . encode ( 'utf-8' ) ) szPointId = c_char_p ( tag . encode ( 'utf-8' ) ) tTime = c_long ( int ( time_value ) ) dValue = c_double ( value ) usMsec = c_ushort ( msec ) # Try to push the data . Function will return 0 if succes...
def _load_json_file_or_url ( self , json_path_or_url ) : '''Return the JSON at the local path or URL as a dict This method raises DataPackageRegistryException if there were any errors .'''
try : if os . path . isfile ( json_path_or_url ) : with open ( json_path_or_url , 'r' ) as f : result = json . load ( f ) else : res = requests . get ( json_path_or_url ) res . raise_for_status ( ) result = res . json ( ) return result except ( ValueError , reques...
def fft ( a , n = None , axis = - 1 , norm = None ) : """Compute the one - dimensional discrete Fourier Transform . This function computes the one - dimensional * n * - point discrete Fourier Transform ( DFT ) with the efficient Fast Fourier Transform ( FFT ) algorithm [ CT ] . Parameters a : array _ like...
output = mkl_fft . fft ( a , n , axis ) if _unitary ( norm ) : output *= 1 / sqrt ( output . shape [ axis ] ) return output
def basic_auth ( credentials ) : """Create an HTTP basic authentication callable Parameters credentials : ~ typing . Tuple [ str , str ] The ( username , password ) - tuple Returns ~ typing . Callable [ [ Request ] , Request ] A callable which adds basic authentication to a : class : ` Request ` ."""
encoded = b64encode ( ':' . join ( credentials ) . encode ( 'ascii' ) ) . decode ( ) return header_adder ( { 'Authorization' : 'Basic ' + encoded } )
def add_process ( self , command = None , vsplit = False , start_directory = None ) : """Add a new process to the current window . ( vsplit / hsplit ) ."""
assert command is None or isinstance ( command , six . text_type ) assert start_directory is None or isinstance ( start_directory , six . text_type ) window = self . arrangement . get_active_window ( ) pane = self . _create_pane ( window , command , start_directory = start_directory ) window . add_pane ( pane , vsplit ...
def add_document ( self , question , answer ) : """Add question answer set to DB . : param question : A question to an answer : type question : : class : ` str ` : param answer : An answer to a question : type answer : : class : ` str `"""
question = question . strip ( ) answer = answer . strip ( ) session = self . Session ( ) if session . query ( Document ) . filter_by ( text = question , answer = answer ) . count ( ) : logger . info ( 'Already here: {0} -> {1}' . format ( question , answer ) ) return logger . info ( 'add document: {0} -> {1}' ....
def read_samples ( self , parameters , array_class = None , ** kwargs ) : """Reads samples for the given parameter ( s ) . The ` ` parameters ` ` can be the name of any dataset in ` ` samples _ group ` ` , a virtual field or method of ` ` FieldArray ` ` ( as long as the file contains the necessary fields to d...
# get the type of array class to use if array_class is None : array_class = FieldArray # get the names of fields needed for the given parameters possible_fields = self [ self . samples_group ] . keys ( ) loadfields = array_class . parse_parameters ( parameters , possible_fields ) samples = self . read_raw_samples (...
def _batched_op_msg_impl ( operation , command , docs , check_keys , ack , opts , ctx , buf ) : """Create a batched OP _ MSG write ."""
max_bson_size = ctx . max_bson_size max_write_batch_size = ctx . max_write_batch_size max_message_size = ctx . max_message_size flags = b"\x00\x00\x00\x00" if ack else b"\x02\x00\x00\x00" # Flags buf . write ( flags ) # Type 0 Section buf . write ( b"\x00" ) buf . write ( _dict_to_bson ( command , False , opts ) ) # Ty...
def read_crtf ( filename , errors = 'strict' ) : """Reads a CRTF region file and returns a list of region objects . Parameters filename : ` str ` The file path errors : ` ` warn ` ` , ` ` ignore ` ` , ` ` strict ` ` , optional The error handling scheme to use for handling parsing errors . The default is...
with open ( filename ) as fh : if regex_begin . search ( fh . readline ( ) ) : region_string = fh . read ( ) parser = CRTFParser ( region_string , errors ) return parser . shapes . to_regions ( ) else : raise CRTFRegionParserError ( 'Every CRTF Region must start with "#CRTF" ' )
def _build_strain_specific_model ( self , strain_id , ref_functional_genes , orth_matrix , force_rerun = False ) : """Create strain GEMPRO , set functional genes"""
gp_noseqs_path = op . join ( self . model_dir , '{}_gp.pckl' . format ( strain_id ) ) if ssbio . utils . force_rerun ( flag = force_rerun , outfile = gp_noseqs_path ) : logging . disable ( logging . WARNING ) strain_gp = GEMPRO ( gem_name = strain_id ) # if self . reference _ gempro . model : # strain _...
def get_timestamp ( time = True , precice = False ) : '''What time is it ? : param time : Append ` ` - % H . % M . % S ` ` to the final string . : param precice : Append ` ` - % f ` ` to the final string . Is only recognized when ` time ` is set to ` ` True ` ` : returns : A timestamp string of now in...
f = '%Y.%m.%d' if time : f += '-%H.%M.%S' if precice : f += '-%f' return _datetime . now ( ) . strftime ( f )