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def users ( self , proc ) : """Searches for all users running a given command . Returns : dict : each username as a key to a list of PIDs ( as strings ) that are running the given process . ` ` { } ` ` if neither ` ` USER ` ` nor ` ` UID ` ` is found or ` ` proc ` ` is not found . . . note : : ' proc ' ...
ret = { } if self . first_column in [ 'USER' , 'UID' ] : for row in self . data : if proc == row [ self . command_name ] : if row [ self . first_column ] not in ret : ret [ row [ self . first_column ] ] = [ ] ret [ row [ self . first_column ] ] . append ( row [ "PID" ...
def _timestamp ( ) : """Return a timestamp with microsecond precision ."""
moment = time . time ( ) moment_us = repr ( moment ) . split ( '.' ) [ 1 ] return time . strftime ( "%Y-%m-%d-%H-%M-%S-{}" . format ( moment_us ) , time . gmtime ( moment ) )
def _get_upper_bound ( self ) : r"""Return an upper bound on the eigenvalues of the Laplacian ."""
if self . lap_type == 'normalized' : return 2 # Equal iff the graph is bipartite . elif self . lap_type == 'combinatorial' : bounds = [ ] # Equal for full graphs . bounds += [ self . n_vertices * np . max ( self . W ) ] # Gershgorin circle theorem . Equal for regular bipartite graphs . # Spe...
def get_all_bundle_tasks ( self , bundle_ids = None , filters = None ) : """Retrieve current bundling tasks . If no bundle id is specified , all tasks are retrieved . : type bundle _ ids : list : param bundle _ ids : A list of strings containing identifiers for previously created bundling tasks . : type f...
params = { } if bundle_ids : self . build_list_params ( params , bundle_ids , 'BundleId' ) if filters : self . build_filter_params ( params , filters ) return self . get_list ( 'DescribeBundleTasks' , params , [ ( 'item' , BundleInstanceTask ) ] , verb = 'POST' )
def _tab_type ( self ) : """Private method to define the tab type"""
with open ( self . abspath ) as fobj : contents = fobj . readlines ( ) for line in contents : if 'COMPONENTS' in line : return 'keyword' else : return 'fixed'
def _write_bin ( self , stream , byte_order ) : '''Save a PLY element to a binary PLY file . The element may contain list properties .'''
for rec in self . data : for prop in self . properties : prop . _write_bin ( rec [ prop . name ] , stream , byte_order )
def compile_authors ( authors ) : """Compiles authors " Last , First " into a single list : param list authors : Raw author data retrieved from doi . org : return list : Author objects"""
author_list = [ ] for person in authors : author_list . append ( { 'name' : person [ 'family' ] + ", " + person [ 'given' ] } ) return author_list
def get_map_title ( hazard , exposure , hazard_category ) : """Helper to get map title . : param hazard : A hazard definition . : type hazard : dict : param exposure : An exposure definition . : type exposure : dict : param hazard _ category : A hazard category definition . : type hazard _ category : di...
if hazard == hazard_generic : map_title = tr ( '{exposure_name} affected' ) . format ( exposure_name = exposure [ 'name' ] ) else : if hazard_category == hazard_category_single_event : map_title = tr ( '{exposure_name} affected by {hazard_name} event' ) . format ( exposure_name = exposure [ 'name' ] , h...
def _verify_or_create_domain ( self ) : """Verify that a domain with the name self . domain exists . Else create it . : return :"""
# Get all domains registered with the user r = requests . get ( url = self . server + "/domains" , auth = ( self . username , self . password ) , headers = self . headers , json = self . data ) if r . ok : names = [ ] d = r . json ( ) rdata = d [ "data" ] if rdata : for d in rdata : ...
def kabsch_rmsd ( P , Q , translate = False ) : """Rotate matrix P unto Q using Kabsch algorithm and calculate the RMSD . Parameters P : array ( N , D ) matrix , where N is points and D is dimension . Q : array ( N , D ) matrix , where N is points and D is dimension . translate : bool Use centroids to...
if translate : Q = Q - centroid ( Q ) P = P - centroid ( P ) P = kabsch_rotate ( P , Q ) return rmsd ( P , Q )
def from_surface ( renderer , surface ) : """Create a texture from an existing surface . Args : surface ( Surface ) : The surface containing pixel data used to fill the texture . Returns : Texture : A texture containing the pixels from surface . Raises : SDLError : If an error is encountered ."""
texture = object . __new__ ( Texture ) texture . _ptr = check_ptr_err ( lib . SDL_CreateTextureFromSurface ( renderer . _ptr , surface . _ptr ) ) return texture
def _get_chromecast_from_host ( host , tries = None , retry_wait = None , timeout = None , blocking = True ) : """Creates a Chromecast object from a zeroconf host ."""
# Build device status from the mDNS info , this information is # the primary source and the remaining will be fetched # later on . ip_address , port , uuid , model_name , friendly_name = host _LOGGER . debug ( "_get_chromecast_from_host %s" , host ) cast_type = CAST_TYPES . get ( model_name . lower ( ) , CAST_TYPE_CHRO...
def CheckHashes ( self , hashes , unused_external = True ) : """Checks a list of hashes for presence in the store . Only unique sha1 hashes are checked , if there is duplication in the hashes input it is the caller ' s responsibility to maintain any necessary mappings . Args : hashes : A list of Hash object...
hash_map = { } for hsh in hashes : if hsh . HasField ( "sha1" ) : hash_urn = self . PATH . Add ( str ( hsh . sha1 ) ) logging . debug ( "Checking URN %s" , str ( hash_urn ) ) hash_map [ hash_urn ] = hsh for metadata in aff4 . FACTORY . Stat ( list ( hash_map ) ) : yield metadata [ "urn" ...
def zoneToRegion ( zone ) : """Get a region ( e . g . us - west - 2 ) from a zone ( e . g . us - west - 1c ) ."""
from toil . lib . context import Context return Context . availability_zone_re . match ( zone ) . group ( 1 )
def get_xy_environment ( self , xy ) : '''Get manager address for the environment which should have the agent with given * xy * coordinate , or None if no such environment is in this multi - environment .'''
x = xy [ 0 ] y = xy [ 1 ] for origin , addr in self . _slave_origins : ox = origin [ 0 ] oy = origin [ 1 ] if ox <= x < ox + self . gs [ 0 ] and oy <= y < oy + self . gs [ 1 ] : return addr return None
def _on_connection_open ( self , connection ) : """Callback invoked when the connection is successfully established . Args : connection ( pika . connection . SelectConnection ) : The newly - estabilished connection ."""
_log . info ( "Successfully opened connection to %s" , connection . params . host ) self . _channel = connection . channel ( on_open_callback = self . _on_channel_open )
def write_min_config ( self , filename , header = "# Generated by Kconfiglib (https://github.com/ulfalizer/Kconfiglib)\n" ) : """Writes out a " minimal " configuration file , omitting symbols whose value matches their default value . The format matches the one produced by ' make savedefconfig ' . The resultin...
with self . _open ( filename , "w" ) as f : f . write ( header ) for sym in self . unique_defined_syms : # Skip symbols that cannot be changed . Only check # non - choice symbols , as selects don ' t affect choice # symbols . if not sym . choice and sym . visibility <= expr_value ( sym . rev_dep...
def op_list_apps ( self ) : """Prints out and returns a list of known applications . : rtype : list : return : list of applications"""
self . logger . info ( 'Listing known applications ...' ) apps = self . get_apps ( ) for app in apps : self . logger . info ( 'Found `%s`' % app ) else : self . logger . info ( '\nDONE. No applications found in `%s` directory.\n' % APPS_DIRNAME ) return apps
def parse_assign_target ( self , with_tuple = True , name_only = False , extra_end_rules = None , with_namespace = False ) : """Parse an assignment target . As Jinja2 allows assignments to tuples , this function can parse all allowed assignment targets . Per default assignments to tuples are parsed , that can b...
if with_namespace and self . stream . look ( ) . type == 'dot' : token = self . stream . expect ( 'name' ) next ( self . stream ) # dot attr = self . stream . expect ( 'name' ) target = nodes . NSRef ( token . value , attr . value , lineno = token . lineno ) elif name_only : token = self . strea...
def lookup_hostname ( self , ip ) : """Look up a lease object with given ip address and return the associated client hostname . @ type ip : str @ rtype : str or None @ raises ValueError : @ raises OmapiError : @ raises OmapiErrorNotFound : if no lease object with the given ip address could be found @ ra...
res = self . lookup_by_lease ( ip = ip ) if "client-hostname" not in res : raise OmapiErrorAttributeNotFound ( ) return res [ "client-hostname" ] . decode ( 'utf-8' )
def launch ( thing , title = False ) : """analyze a thing , create a nice HTML document , and launch it ."""
html = htmlFromThing ( thing , title = title ) if not html : print ( "no HTML was generated." ) return fname = "%s/%s.html" % ( tempfile . gettempdir ( ) , str ( time . time ( ) ) ) with open ( fname , 'w' ) as f : f . write ( html ) webbrowser . open ( fname )
def index_based_complete ( self , text : str , line : str , begidx : int , endidx : int , index_dict : Mapping [ int , Union [ Iterable , Callable ] ] , all_else : Union [ None , Iterable , Callable ] = None ) -> List [ str ] : """Tab completes based on a fixed position in the input string : param text : the stri...
# Get all tokens through the one being completed tokens , _ = self . tokens_for_completion ( line , begidx , endidx ) if not tokens : return [ ] matches = [ ] # Get the index of the token being completed index = len ( tokens ) - 1 # Check if token is at an index in the dictionary if index in index_dict : match_...
def get_default_config ( self ) : """Returns the default collector settings"""
config = super ( VMSDomsCollector , self ) . get_default_config ( ) config . update ( { 'path' : 'vms' } ) return config
def create_api_v4_ipv4 ( self ) : """Get an instance of Api V4 IPv4 services facade ."""
return ApiV4IPv4 ( self . networkapi_url , self . user , self . password , self . user_ldap )
def collect_results ( ) : """Runs all platforms / backends / benchmarks and returns as list of BenchmarkResults , sorted by benchmark and time taken ."""
results = [ ] for exe , backendname in EXE_BACKEND_MATRIX : results . extend ( benchmark_process_and_backend ( exe , backendname ) ) results . extend ( benchmark_go ( ) ) results . sort ( key = lambda br : ( br . benchmark , float ( br . time ) , br . platform , br . backend ) ) return results
def run ( self , callback = None , limit = 0 ) : """Start pcap ' s loop over the interface , calling the given callback for each packet : param callback : a function receiving ( win _ pcap , param , header , pkt _ data ) for each packet intercepted : param limit : how many packets to capture ( A value of - 1 or...
if self . _handle is None : raise self . DeviceIsNotOpen ( ) # Set new callback self . _callback = callback # Run loop with callback wrapper wtypes . pcap_loop ( self . _handle , limit , self . _callback_wrapper , None )
def _fqdn ( o , oset = True , recheck = False , pmodule = None ) : """Returns the fully qualified name of the object . Args : o ( type ) : instance of the object ' s type . oset ( bool ) : when True , the fqdn will also be set on the object as attribute ` _ _ fqdn _ _ ` . recheck ( bool ) : for sub - clas...
if id ( o ) in _set_failures or o is None : return None if recheck or not _safe_hasattr ( o , "__fqdn__" ) : import inspect if not hasattr ( o , "__name__" ) : msg . warn ( "Skipped object {}: no __name__ attribute." . format ( o ) , 3 ) return result = None if hasattr ( o , "__acorn...
def __open ( self , url , headers = None , data = None , baseurl = "" ) : """Use raw urlopen command ."""
headers = headers or { } if not baseurl : baseurl = self . baseurl req = Request ( "%s%s" % ( baseurl , url ) , headers = headers ) _LOGGER . debug ( url ) try : req . data = urlencode ( data ) . encode ( 'utf-8' ) except TypeError : pass opener = build_opener ( ) try : resp = opener . open ( req ) ...
def invalidate_and_update_screen ( self , screen_id ) : """Redraw the specified VM screen . in screen _ id of type int The guest screen to redraw ."""
if not isinstance ( screen_id , baseinteger ) : raise TypeError ( "screen_id can only be an instance of type baseinteger" ) self . _call ( "invalidateAndUpdateScreen" , in_p = [ screen_id ] )
def makeLUTfromCTF ( sclist , N = None ) : """Use a Color Transfer Function to generate colors in a vtk lookup table . See ` here < http : / / www . vtk . org / doc / nightly / html / classvtkColorTransferFunction . html > ` _ . : param list sclist : a list in the form ` ` [ ( scalar1 , [ r , g , b ] ) , ( scal...
ctf = vtk . vtkColorTransferFunction ( ) ctf . SetColorSpaceToDiverging ( ) for sc in sclist : scalar , col = sc r , g , b = getColor ( col ) ctf . AddRGBPoint ( scalar , r , g , b ) if N is None : N = len ( sclist ) lut = vtk . vtkLookupTable ( ) lut . SetNumberOfTableValues ( N ) lut . Build ( ) for i...
def get_exptime ( self , img ) : """Obtain EXPTIME"""
header = self . get_header ( img ) if 'EXPTIME' in header . keys ( ) : etime = header [ 'EXPTIME' ] elif 'EXPOSED' in header . keys ( ) : etime = header [ 'EXPOSED' ] else : etime = 1.0 return etime
def get_form ( self , form_class = None ) : form = super ( LineAlbaranUpdate , self ) . get_form ( form_class ) raise Exception ( "Cambiar ProductStock por ProductUnique" ) """ps = ProductStock . objects . filter ( line _ albaran = self . object ) . first ( ) if ps : # initial field form . fields [ ' ...
return form
def _rpc ( self , method , * args ) : """Sends an rpc to the app . Args : method : str , The name of the method to execute . args : any , The args of the method . Returns : The result of the rpc . Raises : ProtocolError : Something went wrong with the protocol . ApiError : The rpc went through , how...
with self . _lock : apiid = next ( self . _counter ) data = { 'id' : apiid , 'method' : method , 'params' : args } request = json . dumps ( data ) self . _client_send ( request ) response = self . _client_receive ( ) if not response : raise ProtocolError ( self . _ad , ProtocolError . NO_RESPONS...
def SLIT_DIFFRACTION ( x , g ) : """Instrumental ( slit ) function ."""
y = zeros ( len ( x ) ) index_zero = x == 0 index_nonzero = ~ index_zero dk_ = pi / g x_ = dk_ * x [ index_nonzero ] w_ = sin ( x_ ) r_ = w_ ** 2 / x_ ** 2 y [ index_zero ] = 1 y [ index_nonzero ] = r_ / g return y
def operator_complexity ( self ) : """Operator complexity of this multigrid hierarchy . Defined as : Number of nonzeros in the matrix on all levels / Number of nonzeros in the matrix on the finest level"""
return sum ( [ level . A . nnz for level in self . levels ] ) / float ( self . levels [ 0 ] . A . nnz )
def use_kwargs ( args , locations = None , inherit = None , apply = None , ** kwargs ) : """Inject keyword arguments from the specified webargs arguments into the decorated view function . Usage : . . code - block : : python from marshmallow import fields @ use _ kwargs ( { ' name ' : fields . Str ( ) , '...
kwargs . update ( { 'locations' : locations } ) def wrapper ( func ) : options = { 'args' : args , 'kwargs' : kwargs , } annotate ( func , 'args' , [ options ] , inherit = inherit , apply = apply ) return activate ( func ) return wrapper
async def emit ( self , event , data , namespace = None , room = None , skip_sid = None , callback = None , ** kwargs ) : """Emit a message to a single client , a room , or all the clients connected to the namespace . This method takes care or propagating the message to all the servers that are connected thro...
if kwargs . get ( 'ignore_queue' ) : return await super ( ) . emit ( event , data , namespace = namespace , room = room , skip_sid = skip_sid , callback = callback ) namespace = namespace or '/' if callback is not None : if self . server is None : raise RuntimeError ( 'Callbacks can only be issued from ...
def normalize ( A , axis = None , inplace = False ) : """Normalize the input array so that it sums to 1. Parameters A : array , shape ( n _ samples , n _ features ) Non - normalized input data . axis : int Dimension along which normalization is performed . Returns normalized _ A : array , shape ( n _ ...
if not inplace : A = A . copy ( ) A += np . finfo ( float ) . eps Asum = A . sum ( axis ) if axis and A . ndim > 1 : # Make sure we don ' t divide by zero . Asum [ Asum == 0 ] = 1 shape = list ( A . shape ) shape [ axis ] = 1 Asum . shape = shape A /= Asum return A
def ssn ( self ) : """Ukrainian " Реєстраційний номер облікової картки платника податків " also known as " Ідентифікаційний номер фізичної особи " ."""
digits = [ ] # Number of days between 1899-12-31 and a birth date for digit in str ( ( self . generator . date_object ( ) - date ( 1899 , 12 , 31 ) ) . days ) : digits . append ( int ( digit ) ) # Person ' s sequence number for _ in range ( 4 ) : digits . append ( self . random_int ( 0 , 9 ) ) checksum = ( digi...
def get_chain ( self , group_name ) : """Provides the component and group names for an analysis chain . : param group _ name : The group name of the last step in the analysis chain e . g . ' Basecall _ 1D _ 000' : returns : A list of component - name / group - name pairs ( tuples ) . This will include each ...
self . assert_open ( ) endgroup = 'Analyses/{}' . format ( group_name ) attr = self . handle [ endgroup ] . attrs if 'component' in attr : component = attr [ 'component' ] else : component = LEGACY_COMPONENT_NAMES [ group_name [ : - 4 ] ] chain = deque ( ) chain . append ( ( component , group_name ) ) groups_to...
def _getClassDefinition ( self , ref ) : """Reads class definition from the stream ."""
is_ref = ref & REFERENCE_BIT == 0 ref >>= 1 if is_ref : class_def = self . context . getClassByReference ( ref ) return class_def name = self . readBytes ( ) alias = None if name == '' : name = pyamf . ASObject try : alias = pyamf . get_class_alias ( name ) except pyamf . UnknownClassAlias : if self...
def check_id_has_no_blanks ( self , ds ) : '''Check if there are blanks in the id field : param netCDF4 . Dataset ds : An open netCDF dataset'''
if not hasattr ( ds , u'id' ) : return if ' ' in getattr ( ds , u'id' ) : return Result ( BaseCheck . MEDIUM , False , 'no_blanks_in_id' , msgs = [ u'There should be no blanks in the id field' ] ) else : return Result ( BaseCheck . MEDIUM , True , 'no_blanks_in_id' , msgs = [ ] )
def run_head ( self , proposals , stage ) : """Args : proposals : BoxProposals stage : 0 , 1 , 2 Returns : FastRCNNHead Nx4 , updated boxes"""
reg_weights = tf . constant ( cfg . CASCADE . BBOX_REG_WEIGHTS [ stage ] , dtype = tf . float32 ) pooled_feature = self . roi_func ( proposals . boxes ) # N , C , S , S pooled_feature = self . scale_gradient ( pooled_feature ) head_feature = self . fastrcnn_head_func ( 'head' , pooled_feature ) label_logits , box_logit...
def plotTimeline ( dataTask , filename ) : """Build a timeline"""
fig = plt . figure ( ) ax = fig . gca ( ) worker_names = [ x for x in dataTask . keys ( ) if "broker" not in x ] min_time = getMinimumTime ( dataTask ) ystep = 1. / ( len ( worker_names ) + 1 ) y = 0 for worker , vals in dataTask . items ( ) : if "broker" in worker : continue y += ystep if hasattr (...
def Reverse ( self , copy = False ) : """Reverse the order of the points"""
numPoints = self . GetN ( ) if copy : revGraph = self . Clone ( ) else : revGraph = self X = self . GetX ( ) EXlow = self . GetEXlow ( ) EXhigh = self . GetEXhigh ( ) Y = self . GetY ( ) EYlow = self . GetEYlow ( ) EYhigh = self . GetEYhigh ( ) for i in range ( numPoints ) : index = numPoints - 1 - i re...
def put ( local , remote ) : """Put a file or folder and its contents on the board . Put will upload a local file or folder to the board . If the file already exists on the board it will be overwritten with no warning ! You must pass at least one argument which is the path to the local file / folder to uplo...
# Use the local filename if no remote filename is provided . if remote is None : remote = os . path . basename ( os . path . abspath ( local ) ) # Check if path is a folder and do recursive copy of everything inside it . # Otherwise it ' s a file and should simply be copied over . if os . path . isdir ( local ) : #...
def attach_foreignkey ( objects , field , related = [ ] , database = None ) : """Shortcut method which handles a pythonic LEFT OUTER JOIN . ` ` attach _ foreignkey ( posts , Post . thread ) ` ` Works with both ForeignKey and OneToOne ( reverse ) lookups ."""
if not objects : return if database is None : database = list ( objects ) [ 0 ] . _state . db is_foreignkey = isinstance ( field , SingleRelatedObjectDescriptor ) if not is_foreignkey : field = field . field accessor = '_%s_cache' % field . name model = field . rel . to lookup = 'pk' column ...
def sort ( self , column_name = None , reverse = False ) : """Sort rows in this table , preserving a record of how that sorting is done in TableFu . options [ ' sorted _ by ' ]"""
if not column_name and self . options . has_key ( 'sorted_by' ) : column_name = self . options [ 'sorted_by' ] . keys ( ) [ 0 ] if column_name not in self . default_columns : raise ValueError ( "%s isn't a column in this table" % column_name ) index = self . default_columns . index ( column_name ) self . table ...
def mavlink_packet ( self , m ) : '''handle an incoming mavlink packet'''
# do nothing if not caibrating if ( self . calibrating == False ) : return if m . get_type ( ) == 'RC_CHANNELS_RAW' : for i in range ( 1 , self . num_channels + 1 ) : v = getattr ( m , 'chan%u_raw' % i ) if self . get_cal_min ( i ) > v : self . set_cal_min ( i , v ) self ...
def error_handler ( _ , err , arg ) : """Update the mutable integer ` arg ` with the error code ."""
arg . value = err . error return libnl . handlers . NL_STOP
def host2id ( self , hostname ) : """return member id by hostname"""
for key , value in self . server_map . items ( ) : if value == hostname : return key
def cli ( env , abuse , address1 , address2 , city , company , country , firstname , lastname , postal , public , state ) : """Edit the RWhois data on the account ."""
mgr = SoftLayer . NetworkManager ( env . client ) update = { 'abuse_email' : abuse , 'address1' : address1 , 'address2' : address2 , 'company_name' : company , 'city' : city , 'country' : country , 'first_name' : firstname , 'last_name' : lastname , 'postal_code' : postal , 'state' : state , 'private_residence' : publi...
def execute_lite ( self , instructions , context = None ) : """Execute a list of instructions . It does not support loops ."""
if context : self . __cpu . registers = dict ( context ) for instr in instructions : self . __execute_one ( instr ) return dict ( self . __cpu . registers ) , self . __mem
def encode ( self , value ) : """Return a bytestring representation of the value"""
if isinstance ( value , Token ) : return b ( value . value ) if isinstance ( value , bytes ) : return value elif isinstance ( value , ( int , long ) ) : value = b ( str ( value ) ) elif isinstance ( value , float ) : value = repr ( value ) elif not isinstance ( value , basestring ) : value = str ( v...
def text_has_been_edited ( self , text ) : """Find text has been edited ( this slot won ' t be triggered when setting the search pattern combo box text programmatically )"""
self . find ( changed = True , forward = True , start_highlight_timer = True )
def splitclass ( classofdevice ) : """Splits the given class of device to return a 3 - item tuple with the major service class , major device class and minor device class values . These values indicate the device ' s major services and the type of the device ( e . g . mobile phone , laptop , etc . ) . If you ...
if not isinstance ( classofdevice , int ) : try : classofdevice = int ( classofdevice ) except ( TypeError , ValueError ) : raise TypeError ( "Given device class '%s' cannot be split" % str ( classofdevice ) ) data = classofdevice >> 2 # skip over the 2 " format " bits service = data >> 11 major...
async def message_from_token ( self , token : Text , payload : Any ) -> Optional [ BaseMessage ] : """There is two ways of getting a FB user : either with a signed request or either with a platform token . Both are tried out ."""
methods = [ self . _message_from_sr , self . _message_from_token , ] for method in methods : msg = method ( token , payload ) if msg : return msg
def set_temperature ( self , max_set_point = None ) : """: param max _ set _ point : a float for the max set point value in celsius : return : nothing"""
desired_state = { } if max_set_point : desired_state [ 'max_set_point' ] = max_set_point response = self . api_interface . set_device_state ( self , { "desired_state" : desired_state } ) self . _update_state_from_response ( response )
def sftp ( task : Task , src : str , dst : str , action : str , dry_run : Optional [ bool ] = None ) -> Result : """Transfer files from / to the device using sftp protocol Example : : nornir . run ( files . sftp , action = " put " , src = " README . md " , dst = " / tmp / README . md " ) Arguments : d...
dry_run = task . is_dry_run ( dry_run ) actions = { "put" : put , "get" : get } client = task . host . get_connection ( "paramiko" , task . nornir . config ) scp_client = SCPClient ( client . get_transport ( ) ) sftp_client = paramiko . SFTPClient . from_transport ( client . get_transport ( ) ) files_changed = actions ...
def writeFile ( self , directory = None ) : """Writes back the file to a temporary path ( optionaly specified )"""
if directory : # If a directory was specified full_path = os . path . join ( directory , self . filename ) with open ( full_path , 'wb' ) as f : f . write ( pickle . loads ( self . data ) . read ( ) ) return full_path # if no directory was specified , create a temporary file this_file = tempfile . N...
def open ( self , path , encoding = None , use_cached_encoding = True ) : """Open a file and set its content on the editor widget . pyqode does not try to guess encoding . It ' s up to the client code to handle encodings . You can either use a charset detector to detect encoding or rely on a settings in your ...
ret_val = False if encoding is None : encoding = locale . getpreferredencoding ( ) self . opening = True settings = Cache ( ) self . _path = path # get encoding from cache if use_cached_encoding : try : cached_encoding = settings . get_file_encoding ( path , preferred_encoding = encoding ) except Ke...
def view ( route : str ) : """Retrieves the contents of the file specified by the view route if it exists ."""
project = cauldron . project . get_internal_project ( ) results_path = project . results_path if project else None if not project or not results_path : return '' , 204 path = os . path . join ( results_path , route ) if not os . path . exists ( path ) : return '' , 204 return flask . send_file ( path , mimetype...
def _add_subscribers_for_type ( self , callback_type , subscribers , callbacks , ** kwargs ) : '''add a done / queued / progress callback to the appropriate list'''
for subscriber in subscribers : callback_name = 'on_' + callback_type if hasattr ( subscriber , callback_name ) : _function = functools . partial ( getattr ( subscriber , callback_name ) , ** kwargs ) callbacks . append ( _function )
def __decode_data_time ( self , payload ) : """Extract time and decode payload ( based on mime type ) from payload . Applies to E _ FEEDDATA and E _ RECENTDATA . Returns tuple of data , mime , time ."""
data , mime = self . __bytes_to_share_data ( payload ) try : time = datetime . strptime ( payload . get ( P_TIME ) , self . __share_time_fmt ) except ( ValueError , TypeError ) : logger . warning ( 'Share payload from container has invalid timestamp (%s), will use naive local time' , payload . get ( P_TIME ) ) ...
def set_last_build_date ( self ) : """Parses last build date and set value"""
try : self . last_build_date = self . soup . find ( 'lastbuilddate' ) . string except AttributeError : self . last_build_date = None
def generate_null_timeseries ( self , ts , mu , sigma ) : """Generate a time series with a given mu and sigma . This serves as the NULL distribution ."""
l = len ( ts ) return np . random . normal ( mu , sigma , l )
def _partial_corr ( self , x = None , y = None , covar = None , x_covar = None , y_covar = None , tail = 'two-sided' , method = 'pearson' ) : """Partial and semi - partial correlation ."""
stats = partial_corr ( data = self , x = x , y = y , covar = covar , x_covar = x_covar , y_covar = y_covar , tail = tail , method = method ) return stats
def partial_trace ( self , qubits : Qubits ) -> 'QubitVector' : """Return the partial trace over some subset of qubits"""
N = self . qubit_nb R = self . rank if R == 1 : raise ValueError ( 'Cannot take trace of vector' ) new_qubits : List [ Qubit ] = list ( self . qubits ) for q in qubits : new_qubits . remove ( q ) if not new_qubits : raise ValueError ( 'Cannot remove all qubits with partial_trace.' ) indices = [ self . qubit...
def multihead_attention ( queries , keys , scope = "multihead_attention" , num_units = None , num_heads = 4 , dropout_rate = 0 , is_training = True , causality = False ) : '''Applies multihead attention . Args : queries : A 3d tensor with shape of [ N , T _ q , C _ q ] . keys : A 3d tensor with shape of [ N ,...
global look5 with tf . variable_scope ( scope ) : # Set the fall back option for num _ units if num_units is None : num_units = queries . get_shape ( ) . as_list ( ) [ - 1 ] Q_ = [ ] K_ = [ ] V_ = [ ] for head_i in range ( num_heads ) : Q = tf . layers . dense ( queries , num_units /...
def pday ( dayfmt ) : """P the day > > > print ( pday ( ' 2012-08-24 ' ) ) Friday the 24th"""
year , month , day = map ( int , dayfmt . split ( '-' ) ) return '{day} the {number}' . format ( day = calendar . day_name [ calendar . weekday ( year , month , day ) ] , number = inflect . engine ( ) . ordinal ( day ) , )
def calculate_size ( name , timeout_millis ) : """Calculates the request payload size"""
data_size = 0 data_size += calculate_size_str ( name ) data_size += LONG_SIZE_IN_BYTES return data_size
def prodmix ( I , K , a , p , epsilon , LB ) : """prodmix : robust production planning using soco Parameters : I - set of materials K - set of components a [ i ] [ k ] - coef . matrix p [ i ] - price of material i LB [ k ] - amount needed for k Returns a model , ready to be solved ."""
model = Model ( "robust product mix" ) x , rhs = { } , { } for i in I : x [ i ] = model . addVar ( vtype = "C" , name = "x(%s)" % i ) for k in K : rhs [ k ] = model . addVar ( vtype = "C" , name = "rhs(%s)" % k ) model . addCons ( quicksum ( x [ i ] for i in I ) == 1 ) for k in K : model . addCons ( rhs [ k...
def _init_trace ( self , n , color , style , linewidth = 2.5 , zorder = None , marker = None , markersize = 6 ) : """used for building set of traces"""
while n >= len ( self . traces ) : self . traces . append ( LineProperties ( ) ) line = self . traces [ n ] label = "trace %i" % ( n + 1 ) line . label = label line . drawstyle = 'default' if zorder is None : zorder = 5 * ( n + 1 ) line . zorder = zorder if color is not None : line . color = color if style ...
def update_resources ( Cnt ) : '''Update resources . py with the paths to the new installed apps .'''
# list of path names which will be saved key_list = [ 'PATHTOOLS' , 'RESPATH' , 'REGPATH' , 'DCM2NIIX' , 'HMUDIR' ] # get the local path to NiftyPET resources . py path_resources = cs . path_niftypet_local ( ) resources_file = os . path . join ( path_resources , 'resources.py' ) # update resources . py if os . path . i...
def eci2geodetic ( eci : np . ndarray , t : datetime , useastropy : bool = True ) -> Tuple [ float , float , float ] : """convert ECI to geodetic coordinates Parameters eci : tuple of float [ meters ] Nx3 target ECI location ( x , y , z ) t : datetime . datetime , float length N vector of datetime OR gree...
ecef = np . atleast_2d ( eci2ecef ( eci , t , useastropy = useastropy ) ) return np . asarray ( ecef2geodetic ( ecef [ : , 0 ] , ecef [ : , 1 ] , ecef [ : , 2 ] ) ) . squeeze ( )
def wait_for_zap ( self , timeout ) : """Wait for ZAP to be ready to receive API calls ."""
timeout_time = time . time ( ) + timeout while not self . is_running ( ) : if time . time ( ) > timeout_time : raise ZAPError ( 'Timed out waiting for ZAP to start.' ) time . sleep ( 2 )
def _add_token_span_to_document ( self , span_element ) : """adds an < intro > , < act > or < conclu > token span to the document ."""
for token in span_element . text . split ( ) : token_id = self . _add_token_to_document ( token ) if span_element . tag == 'act' : # doc can have 0 + acts self . _add_spanning_relation ( 'act_{}' . format ( self . act_count ) , token_id ) else : # < intro > or < conclu > self . _add_spanning...
def pre ( self ) : """Initialize system for power flow study Returns None"""
logger . info ( '-> Power flow study: {} method, {} start' . format ( self . config . method . upper ( ) , 'flat' if self . config . flatstart else 'non-flat' ) ) t , s = elapsed ( ) system = self . system dae = self . system . dae system . dae . init_xy ( ) for device , pflow , init0 in zip ( system . devman . devices...
def get_raw_query ( self ) : """Returns the raw query to use for current search , based on the base query + update query"""
query = self . base_query . copy ( ) search_query = self . search_query . copy ( ) query . update ( search_query ) # Add sorting criteria sorting = self . resolve_sorting ( query ) query . update ( sorting ) # Check if sort _ on is an index and if is sortable . Otherwise , assume # the sorting must be done manually cat...
def num_rewards ( self ) : """Returns the number of distinct rewards . Returns : Returns None if the reward range is infinite or the processed rewards aren ' t discrete , otherwise returns the number of distinct rewards ."""
# Pre - conditions : reward range is finite . # : processed rewards are discrete . if not self . is_reward_range_finite : tf . logging . error ( "Infinite reward range, `num_rewards returning None`" ) return None if not self . is_processed_rewards_discrete : tf . logging . error ( "Processed rewards are not...
def textFileStream ( self , directory , process_all = False ) : """Monitor a directory and process all text files . File names starting with ` ` . ` ` are ignored . : param string directory : a path : param bool process _ all : whether to process pre - existing files : rtype : DStream . . warning : : Th...
deserializer = FileTextStreamDeserializer ( self . _context ) file_stream = FileStream ( directory , process_all ) self . _on_stop_cb . append ( file_stream . stop ) return DStream ( file_stream , self , deserializer )
def recalculate_current_specimen_interpreatations ( self ) : """recalculates all interpretations on all specimens for all coordinate systems . Does not display recalcuated data ."""
self . initialize_CART_rot ( self . s ) if str ( self . s ) in self . pmag_results_data [ 'specimens' ] : for fit in self . pmag_results_data [ 'specimens' ] [ self . s ] : if fit . get ( 'specimen' ) and 'calculation_type' in fit . get ( 'specimen' ) : fit . put ( self . s , 'specimen' , self ....
def stage_tc_create_tag ( self , tag , resource ) : """Add a tag to a resource . Args : tag ( str ) : The tag to be added to the resource . resource ( obj ) : An instance of tcex resource class ."""
tag_resource = resource . tags ( self . tcex . safetag ( tag ) ) tag_resource . http_method = 'POST' t_response = tag_resource . request ( ) if t_response . get ( 'status' ) != 'Success' : self . log . warning ( '[tcex] Failed adding tag "{}" ({}).' . format ( tag , t_response . get ( 'response' ) . text ) )
def debug ( self , msg , indent = 0 , ** kwargs ) : """invoke ` ` self . logger . debug ` `"""
return self . logger . debug ( self . _indent ( msg , indent ) , ** kwargs )
def calc_common_dist ( df ) : '''calculate a common distribution ( for col qn only ) that will be used to qn'''
# axis is col tmp_arr = np . array ( [ ] ) col_names = df . columns . tolist ( ) for inst_col in col_names : # sort column tmp_vect = df [ inst_col ] . sort_values ( ascending = False ) . values # stacking rows vertically ( will transpose ) if tmp_arr . shape [ 0 ] == 0 : tmp_arr = tmp_vect else...
def forwards ( self , orm ) : "Write your forwards methods here ."
db . execute ( 'DELETE FROM cohort_variant' ) db . execute ( 'DELETE FROM cohort_sample' ) db . execute ( 'DELETE FROM cohort' ) samples = orm [ 'samples.Sample' ] . objects . filter ( published = True ) count = samples . count ( ) cohort = orm [ 'samples.Cohort' ] ( name = 'World' , autocreated = True , published = bo...
def multi_log_probs_from_logits_and_actions ( policy_logits , actions ) : """Computes action log - probs from policy logits and actions . In the notation used throughout documentation and comments , T refers to the time dimension ranging from 0 to T - 1 . B refers to the batch size and ACTION _ SPACE refers t...
log_probs = [ ] for i in range ( len ( policy_logits ) ) : log_probs . append ( - tf . nn . sparse_softmax_cross_entropy_with_logits ( logits = policy_logits [ i ] , labels = actions [ i ] ) ) return log_probs
def log_to_file ( filename , level = DEBUG ) : """send paramiko logs to a logfile , if they ' re not already going somewhere"""
logger = logging . getLogger ( "paramiko" ) if len ( logger . handlers ) > 0 : return logger . setLevel ( level ) f = open ( filename , "a" ) handler = logging . StreamHandler ( f ) frm = "%(levelname)-.3s [%(asctime)s.%(msecs)03d] thr=%(_threadid)-3d" frm += " %(name)s: %(message)s" handler . setFormatter ( loggin...
def _build_entry ( parts , existing_list_d , key_value , key_field_num , key_is_field_number , header = None , output_type = OutputType . error_on_dups , ignore_missing_keys = False , keep_key_col = False ) : """Build and add an entry to existing _ list _ d . If the key is a field number , the entry added will be...
if key_value . strip ( ) == "" : if ignore_missing_keys : return raise MissingKeyError ( "missing key value" ) if key_value in existing_list_d : if output_type is OutputType . error_on_dups : raise DuplicateKeyError ( key_value + " appears multiple times as key" ) elif ( output_type is O...
def array2series ( self , array ) : """Prefix the information of the actual Timegrid object to the given array and return it . The Timegrid information is stored in the first thirteen values of the first axis of the returned series . Initialize a Timegrid object and apply its ` array2series ` method on a si...
try : array = numpy . array ( array , dtype = float ) except BaseException : objecttools . augment_excmessage ( 'While trying to prefix timegrid information to the ' 'given array' ) if len ( array ) != len ( self ) : raise ValueError ( f'When converting an array to a sequence, the lengths of the ' f'timegri...
def paste_action_callback ( self , * event ) : """Callback method for paste action"""
if react_to_event ( self . view , self . tree_view , event ) : sm_selection , _ = self . get_state_machine_selection ( ) # only list specific elements are cut by widget if len ( sm_selection . states ) == 1 : global_clipboard . paste ( sm_selection . get_selected_state ( ) , limited = [ 'states' , '...
def compare ( self ) : # pylint : disable = no - self - use """Computes the difference between the candidate config and the running config ."""
# becuase we emulate the configuration history # the difference is between the last committed config and the running - config running_config = self . _download_running_config ( ) running_config_lines = running_config . splitlines ( ) last_committed_config = self . _last_working_config last_committed_config_lines = last...
def threat ( self , name , ** kwargs ) : """Add Threat data to Batch object Args : name ( str ) : The name for this Group . date _ added ( str , kwargs ) : The date timestamp the Indicator was created . xid ( str , kwargs ) : The external id for this Group . Returns : obj : An instance of Threat ."""
group_obj = Threat ( name , ** kwargs ) return self . _group ( group_obj )
def _get_channel ( self ) : """: returns : The detected sound channel : rtype : string"""
if self . channel is None : # Get default channel as the first one that pops up in # ' amixer scontrols ' output , which contains strings in the # following format : # Simple mixer control ' Master ' , 0 # Simple mixer control ' Capture ' , 0 out = check_output ( [ 'amixer' , 'scontrols' ] ) . decode ( ) m = re...
def _get_http ( url , temp_file_name , initial_size , file_size , verbose_bool , progressbar , ncols = 80 ) : """Safely ( resume a ) download to a file from http ( s ) ."""
# Actually do the reading req = urllib . request . Request ( url ) if initial_size > 0 : req . headers [ 'Range' ] = 'bytes=%s-' % ( initial_size , ) try : response = urllib . request . urlopen ( req ) except Exception : # There is a problem that may be due to resuming , some # servers may not support the " Ran...
def _valid_locales ( locales , normalize ) : """Return a list of normalized locales that do not throw an ` ` Exception ` ` when set . Parameters locales : str A string where each locale is separated by a newline . normalize : bool Whether to call ` ` locale . normalize ` ` on each locale . Returns v...
if normalize : normalizer = lambda x : locale . normalize ( x . strip ( ) ) else : normalizer = lambda x : x . strip ( ) return list ( filter ( can_set_locale , map ( normalizer , locales ) ) )
def get_gif_frames ( img ) : """Extracts the frames from an animated gif . : param img : A PIL Image object : return : An array of PIL image objects , each corresponding to a frame in the animation ."""
gif_frames = [ ] n = 0 while img : if img . mode != "RGB" : image = img . convert ( mode = "RGB" ) else : image = img gif_frames . append ( image ) n += 1 try : img . seek ( n ) except EOFError : break return gif_frames
def write ( self , filename = None , io = None , coors = None , igs = None , out = None , float_format = None , ** kwargs ) : """Write mesh + optional results in ` out ` to a file . Parameters filename : str , optional The file name . If None , the mesh name is used instead . io : MeshIO instance or ' auto ...
if filename is None : filename = self . name + '.mesh' if io is None : io = self . io if io is None : io = 'auto' if io == 'auto' : io = MeshIO . any_from_filename ( filename ) if coors is None : coors = self . coors if igs is None : igs = range ( len ( self . conns ) ) aux_mesh = Mesh ....
def prt_summary ( self , prt = sys . stdout ) : """Print summary of grouping / sorting run ."""
# Grouping summary fmtstr = "Grouped: {U:3,} User GOs, using {h:2,} of {H:,} Grouping GOs, for run: {NAME}\n" prt . write ( fmtstr . format ( NAME = self . grpname , U = len ( self . usrgos ) , h = len ( self . hdrobj . hdrgos . intersection ( self . hdrgo2usrgos . keys ( ) ) ) , H = self . hdrobj . num_hdrgos ( ) ) )
def get_default_ndex_cred ( ndex_cred ) : """Gets the NDEx credentials from the dict , or tries the environment if None"""
if ndex_cred : username = ndex_cred . get ( 'user' ) password = ndex_cred . get ( 'password' ) if username is not None and password is not None : return username , password username = get_config ( 'NDEX_USERNAME' ) password = get_config ( 'NDEX_PASSWORD' ) return username , password