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def load_resource ( resource_url : str , forceupdate : bool = False ) : """Load BEL Resource file Forceupdate will create a new index in Elasticsearch regardless of whether an index with the resource version already exists . Args : resource _ url : URL from which to download the resource to load into the BE...
log . info ( f"Loading resource {resource_url}" ) try : # Download resource fo = bel . utils . download_file ( resource_url ) if not fo : log . error ( f"Could not download and open file {resource_url}" ) return "Failed to download resource_url" # Get metadata fo . seek ( 0 ) with gz...
def parse ( cls , parser , text , pos ) : """Parse InspireKeyword . If the keyword is ` texkey ` , enable the parsing texkey expression flag , since its value contains ' : ' which normally isn ' t allowed ."""
try : remaining_text , keyword = parser . parse ( text , cls . grammar ) if keyword . lower ( ) == 'texkey' : parser . _parsing_texkey_expression = True return remaining_text , InspireKeyword ( keyword ) except SyntaxError as e : parser . _parsing_texkey_expression = False return text , e
def create_client ( self , client_id , client_secret , manifest = None , client_credentials = True , refresh_token = True , authorization_code = False , redirect_uri = [ ] ) : """Will create a new client for your application use . - client _ credentials : allows client to get access token - refresh _ token : ca...
self . assert_has_permission ( 'clients.admin' ) if authorization_code and not redirect_uri : raise ValueError ( "Must provide a redirect_uri for clients used with authorization_code" ) # Check if client already exists client = self . get_client ( client_id ) if client : return client uri = self . uri + '/oauth...
def require ( self , lock , guard_func , * guard_args , ** guard_kw ) : """Decorate a function to be run only when a lock is acquired . The lock is requested if the guard function returns True . The decorated function is called if the lock has been granted ."""
def decorator ( f ) : @ wraps ( f ) def wrapper ( * args , ** kw ) : if self . granted ( lock ) : self . msg ( 'Granted {}' . format ( lock ) ) return f ( * args , ** kw ) if guard_func ( * guard_args , ** guard_kw ) and self . acquire ( lock ) : return f ( * ...
def _build_mountpoint ( self , volume ) : """Given a generic volume definition , create the mountPoints element"""
self . add_volume ( self . _build_volume ( volume ) ) return { 'sourceVolume' : self . path_to_name ( volume . get ( 'host' ) ) , 'containerPath' : volume . get ( 'container' ) }
def _nemo_accpars ( self , vo , ro ) : """NAME : _ nemo _ accpars PURPOSE : return the accpars potential parameters for use of this potential with NEMO INPUT : vo - velocity unit in km / s ro - length unit in kpc OUTPUT : accpars string HISTORY : 2014-12-18 - Written - Bovy ( IAS )"""
warnings . warn ( "NEMO's LogPot does not allow flattening in z (for some reason); therefore, flip y and z in NEMO wrt galpy; also does not allow the triaxial b parameter" , galpyWarning ) ampl = self . _amp * vo ** 2. return "0,%s,%s,1.0,%s" % ( ampl , self . _core2 * ro ** 2. * self . _q ** ( 2. / 3. ) , # somewhat w...
def export_pages ( root_page , export_unpublished = False ) : """Create a JSON defintion of part of a site ' s page tree starting from root _ page and descending into its descendants By default only published pages are exported . If a page is unpublished it and all its descendants are pruned even if some of...
pages = Page . objects . descendant_of ( root_page , inclusive = True ) . order_by ( 'path' ) . specific ( ) if not export_unpublished : pages = pages . filter ( live = True ) page_data = [ ] exported_paths = set ( ) for ( i , page ) in enumerate ( pages ) : parent_path = page . path [ : - ( Page . steplen ) ] ...
def calculate_sunrise_sunset ( self , month , day , depression = 0.833 , is_solar_time = False ) : """Calculate sunrise , noon and sunset . Return : A dictionary . Keys are ( " sunrise " , " noon " , " sunset " )"""
datetime = DateTime ( month , day , hour = 12 , leap_year = self . is_leap_year ) return self . calculate_sunrise_sunset_from_datetime ( datetime , depression , is_solar_time )
def remove_tag ( self , name , user , message = None , date = None ) : """Removes tag with the given ` ` name ` ` . : param name : name of the tag to be removed : param user : full username , i . e . : " Joe Doe < joe . doe @ example . com > " : param message : message of the tag ' s removal commit : param ...
if name not in self . tags : raise TagDoesNotExistError ( "Tag %s does not exist" % name ) tagpath = posixpath . join ( self . _repo . refs . path , 'refs' , 'tags' , name ) try : os . remove ( tagpath ) self . _parsed_refs = self . _get_parsed_refs ( ) self . tags = self . _get_tags ( ) except OSError ...
def previous_active_pane ( self ) : """The previous active : class : ` . Pane ` or ` None ` if unknown ."""
p = self . _prev_active_pane and self . _prev_active_pane ( ) # Only return when this pane actually still exists in the current # window . if p and p in self . panes : return p
async def answer_inline_query ( self , inline_query_id : base . String , results : typing . List [ types . InlineQueryResult ] , cache_time : typing . Union [ base . Integer , None ] = None , is_personal : typing . Union [ base . Boolean , None ] = None , next_offset : typing . Union [ base . String , None ] = None , s...
results = prepare_arg ( results ) payload = generate_payload ( ** locals ( ) ) result = await self . request ( api . Methods . ANSWER_INLINE_QUERY , payload ) return result
def order_by_on_list ( objects , order_field , is_desc = False ) : """Utility function to sort objects django - style even for non - query set collections : param objects : list of objects to sort : param order _ field : field name , follows django conventions , so " foo _ _ bar " means ` foo . bar ` , can be a...
if callable ( order_field ) : objects . sort ( key = order_field , reverse = is_desc ) return def order_key ( x ) : v = getattr_path ( x , order_field ) if v is None : return MIN return v objects . sort ( key = order_key , reverse = is_desc )
def _sliced_shape ( self , shapes , i , major_axis ) : """Get the sliced shapes for the i - th executor . Parameters shapes : list of ( str , tuple ) The original ( name , shape ) pairs . i : int Which executor we are dealing with ."""
sliced_shapes = [ ] for desc , axis in zip ( shapes , major_axis ) : shape = list ( desc . shape ) if axis >= 0 : shape [ axis ] = self . slices [ i ] . stop - self . slices [ i ] . start sliced_shapes . append ( DataDesc ( desc . name , tuple ( shape ) , desc . dtype , desc . layout ) ) return slic...
def check_geographic_region ( self , ds ) : """6.1.1 When data is representative of geographic regions which can be identified by names but which have complex boundaries that cannot practically be specified using longitude and latitude boundary coordinates , a labeled axis should be used to identify the regions...
ret_val = [ ] region_list = [ # TODO maybe move this ( and other info like it ) into a config file ? 'africa' , 'antarctica' , 'arabian_sea' , 'aral_sea' , 'arctic_ocean' , 'asia' , 'atlantic_ocean' , 'australia' , 'baltic_sea' , 'barents_opening' , 'barents_sea' , 'beaufort_sea' , 'bellingshausen_sea' , 'bering_sea' ,...
def sign ( self , msg , key ) : """Create a signature over a message as defined in RFC7515 using an RSA key : param msg : the message . : type msg : bytes : returns : bytes , the signature of data . : rtype : bytes"""
if not isinstance ( key , rsa . RSAPrivateKey ) : raise TypeError ( "The key must be an instance of rsa.RSAPrivateKey" ) sig = key . sign ( msg , self . padding , self . hash ) return sig
def imagetransformer2d_base_8l_8_32_big ( ) : """hparams fo 8 layer big 2d model for cifar 10."""
hparams = image_transformer2d_base ( ) hparams . num_heads = 16 hparams . hidden_size = 1024 hparams . filter_size = 2048 hparams . num_decoder_layers = 8 hparams . batch_size = 1 hparams . layer_prepostprocess_dropout = 0.3 hparams . query_shape = ( 8 , 16 ) hparams . memory_flange = ( 0 , 32 ) hparams . unconditional...
def fetch_defense_data ( self ) : """Lazy initialization of data necessary to execute defenses ."""
if self . defenses_data_initialized : return logging . info ( 'Fetching defense data from datastore' ) # init data from datastore self . submissions . init_from_datastore ( ) self . dataset_batches . init_from_datastore ( ) self . adv_batches . init_from_datastore ( ) # read dataset metadata self . read_dataset_met...
def is_script ( self , container ) : """Returns ` True ` if this styled text is super / subscript ."""
try : style = self . _style ( container ) return style . get_value ( 'position' , container ) != TextPosition . NORMAL except StyleException : return False
def setSingleStep ( self , singleStep ) : """setter to _ singleStep . converts negativ values to positiv ones . Args : singleStep ( int ) : new _ singleStep value . converts negativ values to positiv ones . Raises : TypeError : If the given argument is not an integer . Returns : int or long : the absolu...
if not isinstance ( singleStep , int ) : raise TypeError ( "Argument is not of type int" ) # don ' t use negative values self . _singleStep = abs ( singleStep ) return self . _singleStep
def start_service ( self , stack , service ) : """启动服务 启动指定名称服务的所有容器 。 Args : - stack : 服务所属的服务组名称 - service : 服务名 Returns : 返回一个tuple对象 , 其格式为 ( < result > , < ResponseInfo > ) - result 成功返回空dict { } , 失败返回 { " error " : " < errMsg string > " } - ResponseInfo 请求的Response信息"""
url = '{0}/v3/stacks/{1}/services/{2}/start' . format ( self . host , stack , service ) return self . __post ( url )
def find_free_prefix ( self , auth , vrf , args ) : """Finds free prefixes in the sources given in ` args ` . * ` auth ` [ BaseAuth ] AAA options . * ` vrf ` [ vrf ] Full VRF - dict specifying in which VRF the prefix should be unique . * ` args ` [ find _ free _ prefix _ args ] Arguments to the find f...
# input sanity if type ( args ) is not dict : raise NipapInputError ( "invalid input, please provide dict as args" ) # TODO : find good default value for max _ num # TODO : let max _ num be configurable from configuration file max_count = 1000 if 'count' in args : if int ( args [ 'count' ] ) > max_count : ...
def destruct ( particles , index ) : """Fermion annihilation operator in matrix representation for a indexed particle in a bounded N - particles fermion fock space"""
mat = np . zeros ( ( 2 ** particles , 2 ** particles ) ) flipper = 2 ** index for i in range ( 2 ** particles ) : ispin = btest ( i , index ) if ispin == 1 : mat [ i ^ flipper , i ] = phase ( i , index ) return csr_matrix ( mat )
def addr ( self , address ) : '''returns dictionary with frame information for given address ( a tuple of two hex numbers )'''
if isinstance ( address , basestring ) : # If you just gave me a single string , assume its " XXXX XXXX " addr = address . split ( ) else : addr = list ( address ) # Convert to actual hex if you give me strings for i in xrange ( len ( addr ) ) : if isinstance ( addr [ i ] , basestring ) : addr [ i ]...
def delete_endpoint_subscriptions ( self , device_id , ** kwargs ) : # noqa : E501 """Delete subscriptions from an endpoint # noqa : E501 Deletes all resource subscriptions in a single endpoint . * * Example usage : * * curl - X DELETE \\ https : / / api . us - east - 1 . mbedcloud . com / v2 / subscriptions / { ...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'asynchronous' ) : return self . delete_endpoint_subscriptions_with_http_info ( device_id , ** kwargs ) # noqa : E501 else : ( data ) = self . delete_endpoint_subscriptions_with_http_info ( device_id , ** kwargs ) # noqa : E501 return data
def simple_locking ( lock_id , expiration = None ) : """A decorator that wraps a function in a single lock getting algorithm"""
def inner_decorator ( function ) : def wrapper ( * args , ** kwargs ) : try : # Trying to acquire lock lock = Lock . acquire_lock ( lock_id , expiration ) except LockError : # Unable to acquire lock - non fatal pass else : # Lock acquired , proceed normally , release ...
def GenerateHelpText ( self , env , sort = None ) : """Generate the help text for the options . env - an environment that is used to get the current values of the options . cmp - Either a function as follows : The specific sort function should take two arguments and return - 1 , 0 or 1 or a boolean to indic...
if callable ( sort ) : options = sorted ( self . options , key = cmp_to_key ( lambda x , y : sort ( x . key , y . key ) ) ) elif sort is True : options = sorted ( self . options , key = lambda x : x . key ) else : options = self . options def format ( opt , self = self , env = env ) : if opt . key in en...
def create_saved_search ( self , ** kwargs ) : # noqa : E501 """Create a saved search # noqa : E501 # noqa : E501 This method makes a synchronous HTTP request by default . To make an asynchronous HTTP request , please pass async _ req = True > > > thread = api . create _ saved _ search ( async _ req = True ...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'async_req' ) : return self . create_saved_search_with_http_info ( ** kwargs ) # noqa : E501 else : ( data ) = self . create_saved_search_with_http_info ( ** kwargs ) # noqa : E501 return data
def extended_flag ( self , which , new = None ) : """Get or set a extended flag . ' which ' can be either a string ( ' SERIAL _ API _ VISIBLE ' etc . ) , or an integer . You should ALWAYS use a string , unless you really know what you are doing ."""
flag = _get_flag ( which , ExtendedFlags ) if flag : if not self . capabilities . have_extended_flag ( flag ) : raise yubikey_base . YubiKeyVersionError ( 'Extended flag %s requires %s, and this is %s %d.%d' % ( which , flag . req_string ( self . capabilities . model ) , self . capabilities . model , self ....
def removeFileSafely ( filename , clobber = True ) : """Delete the file specified , but only if it exists and clobber is True ."""
if filename is not None and filename . strip ( ) != '' : if os . path . exists ( filename ) and clobber : os . remove ( filename )
def _removecleaner ( self , cleaner ) : """Remove the cleaner from the list if it already exists . Returns True if the cleaner was removed ."""
oldlen = len ( self . _old_cleaners ) self . _old_cleaners = [ oldc for oldc in self . _old_cleaners if not oldc . issame ( cleaner ) ] return len ( self . _old_cleaners ) != oldlen
async def get_metrics ( self , element ) : """Get all the metrics for a monitored element ."""
await self . get_data ( ) await self . get_plugins ( ) if element in self . plugins : self . values = self . data [ element ] else : raise exceptions . GlancesApiError ( "Element data not available" )
def adjustPhase ( self , adjustment ) : """Adjust the accelerating phase of the cavity by the value of ` ` adjustment ` ` . The adjustment is additive , so a value of ` ` scalingFactor = 0.0 ` ` will result in no change of the phase ."""
self . phase = self . phase . _replace ( val = self . phase . val + adjustment )
def find_group_consistencies ( groups1 , groups2 ) : r"""Returns a measure of group consistency Example : > > > # ENABLE _ DOCTEST > > > from utool . util _ alg import * # NOQA > > > groups1 = [ [ 1 , 2 , 3 ] , [ 4 ] , [ 5 , 6 ] ] > > > groups2 = [ [ 1 , 2 ] , [ 4 ] , [ 5 , 6 ] ] > > > common _ groups =...
group1_list = { tuple ( sorted ( _group ) ) for _group in groups1 } group2_list = { tuple ( sorted ( _group ) ) for _group in groups2 } common_groups = list ( group1_list . intersection ( group2_list ) ) return common_groups
def create_table ( self , model_class ) : '''Creates a table for the given model class , if it does not exist already .'''
if model_class . is_system_model ( ) : raise DatabaseException ( "You can't create system table" ) if getattr ( model_class , 'engine' ) is None : raise DatabaseException ( "%s class must define an engine" % model_class . __name__ ) self . _send ( model_class . create_table_sql ( self ) )
def dict_of ( validate_key , validate_item ) : """Returns a validator function that succeeds only if the input is a dict , and each key and value in the dict passes as input to the provided validators validate _ key and validate _ item , respectively . : param callable validate _ key : the validator function fo...
def validate ( value , should_raise = True ) : validate_type = is_type ( dict ) if not validate_type ( value , should_raise = should_raise ) : return False for key , item in value . items ( ) : try : validate_key ( key ) except TypeError as e : if should_raise...
def content_present ( self , x : int , y : int ) -> bool : """Determines if a line or printed text is at the given location ."""
# Text ? if ( x , y ) in self . entries : return True # Vertical line ? if any ( v . x == x and v . y1 < y < v . y2 for v in self . vertical_lines ) : return True # Horizontal line ? if any ( line_y == y and x1 < x < x2 for line_y , x1 , x2 , _ in self . horizontal_lines ) : return True return False
def align_CONLL_with_Text ( lines , text , feature_generator , ** kwargs ) : '''Aligns CONLL format syntactic analysis ( a list of strings ) with given EstNLTK ' s Text object . Basically , for each word position in the Text object , finds corresponding line ( s ) in the CONLL format output ; Returns a list...
from estnltk . text import Text if not isinstance ( text , Text ) : raise Exception ( '(!) Unexpected type of input argument! Expected EstNLTK\'s Text. ' ) if not isinstance ( lines , list ) : raise Exception ( '(!) Unexpected type of input argument! Expected a list of strings.' ) try : granularity = featur...
def json ( cls , status_code , process ) : """Callback to validate and extract a JSON object . The returned callback checks a given response for the given status _ code using : function : ` response _ boolean ` . On success the response JSON is parsed and returned . Args : status _ code ( int ) : The http...
def func ( response ) : ret = None if cls . boolean ( status_code ) ( response ) : ret = response . json ( ) or { } return process ( ret ) return func
def approx_contains ( self , point , atol ) : """Return ` ` True ` ` if ` ` point ` ` is " almost " contained in this set . Parameters point : ` array - like ` or float Point to be tested . Its length must be equal to ` ndim ` . In the 1d case , ` ` point ` ` can be given as a float . atol : float Maxim...
try : # Duck - typed check of type point = np . array ( point , dtype = np . float , copy = False , ndmin = 1 ) except ( ValueError , TypeError ) : return False if point . size == 0 : return True elif point . shape != ( self . ndim , ) : return False return self . dist ( point , exponent = np . inf ) <=...
def compileUiDir ( dir , recurse = False , map = None , ** compileUi_args ) : """compileUiDir ( dir , recurse = False , map = None , * * compileUi _ args ) Creates Python modules from Qt Designer . ui files in a directory or directory tree . dir is the name of the directory to scan for files whose name ends w...
import os # Compile a single . ui file . def compile_ui ( ui_dir , ui_file ) : # Ignore if it doesn ' t seem to be a . ui file . if ui_file . endswith ( '.ui' ) : py_dir = ui_dir py_file = ui_file [ : - 3 ] + '.py' # Allow the caller to change the name of the . py file or generate # ...
def run ( tpu_job_name , tpu , gcp_project , tpu_zone , model_dir , model_type = "bitransformer" , vocabulary = gin . REQUIRED , train_dataset_fn = None , eval_dataset_fn = None , dataset_split = "train" , autostack = True , checkpoint_path = "" , mode = "train" , iterations_per_loop = 100 , save_checkpoints_steps = 10...
if not isinstance ( batch_size , int ) : batch_size = batch_size ( sequence_length , mesh_shape , layout_rules ) tf . logging . info ( "mode=%s" % mode , ) tf . logging . info ( "batch_size=%s" % batch_size , ) tf . logging . info ( "sequence_length=%s" % sequence_length , ) tf . logging . info ( "mesh_shape=%s" % ...
def to_json ( value , ** kwargs ) : """Convert instance to JSON"""
if isinstance ( value , HasProperties ) : return value . serialize ( ** kwargs ) try : return json . loads ( json . dumps ( value ) ) except TypeError : raise TypeError ( "Cannot convert type {} to JSON without calling 'serialize' " "on an instance of Instance Property and registering a custom " "serializer...
def split_query ( qs , keep_blank_values = False ) : '''Split the query string . Note for empty values : If an equal sign ( ` ` = ` ` ) is present , the value will be an empty string ( ` ` ' ' ` ` ) . Otherwise , the value will be ` ` None ` ` : : > > > list ( split _ query ( ' a = & b ' , keep _ blank _ valu...
items = [ ] for pair in qs . split ( '&' ) : name , delim , value = pair . partition ( '=' ) if not delim and keep_blank_values : value = None if keep_blank_values or value : items . append ( ( name , value ) ) return items
def install_from_rpm_py_package ( self ) : """Run install from RPM Python binding RPM package ."""
self . _download_and_extract_rpm_py_package ( ) # Find . / usr / lib64 / pythonN . N / site - packages / rpm directory . # A binary built by same version Python with used Python is target # for the safe installation . if self . rpm . has_set_up_py_in ( ) : # If RPM has setup . py . in , this strict check is okay . # Be...
def weekday ( cls , year , month , day ) : """Returns the weekday of the date . 0 = aaitabar"""
return NepDate . from_bs_date ( year , month , day ) . weekday ( )
def register_action ( action ) : """Adds an action to the parser cli . : param action ( BaseAction ) : a subclass of the BaseAction class"""
sub = _subparsers . add_parser ( action . meta ( 'cmd' ) , help = action . meta ( 'help' ) ) sub . set_defaults ( cmd = action . meta ( 'cmd' ) ) for ( name , arg ) in action . props ( ) . items ( ) : sub . add_argument ( arg . name , arg . flag , ** arg . options ) _actions [ action . meta ( 'cmd' ) ] = action
def fit ( self , X , y = None ) : """Fits the GraphLasso covariance model to X . Closely follows sklearn . covariance . graph _ lasso . GraphLassoCV . Parameters X : ndarray , shape ( n _ samples , n _ features ) Data from which to compute the covariance estimate"""
# quic - specific outputs self . opt_ = None self . cputime_ = None self . iters_ = None self . duality_gap_ = None # these must be updated upon self . fit ( ) self . sample_covariance_ = None self . lam_scale_ = None self . is_fitted_ = False # initialize X = check_array ( X , ensure_min_features = 2 , estimator = sel...
def clear ( self ) : """Clear all contents in the relay memory"""
self . states [ : ] = 0 self . actions [ : ] = 0 self . rewards [ : ] = 0 self . terminate_flags [ : ] = 0 self . top = 0 self . size = 0
def pythonize ( self , val ) : """Convert value into a address ip format : : * If value is a list , try to take the last element * match ip address and port ( if available ) : param val : value to convert : type val : : return : address / port corresponding to value : rtype : dict"""
val = unique_value ( val ) matches = re . match ( r"^([^:]*)(?::(\d+))?$" , val ) if matches is None : raise ValueError addr = { 'address' : matches . group ( 1 ) } if matches . group ( 2 ) is not None : addr [ 'port' ] = int ( matches . group ( 2 ) ) return addr
def find_library ( library_root , additional_places = None ) : """Returns the name of the library without extension : param library _ root : root of the library to search , for example " cfitsio _ " will match libcfitsio _ 1.2.3.4 . so : return : the name of the library found ( NOTE : this is * not * the path )...
# find _ library searches for all system paths in a system independent way ( but NOT those defined in # LD _ LIBRARY _ PATH or DYLD _ LIBRARY _ PATH ) first_guess = ctypes . util . find_library ( library_root ) if first_guess is not None : # Found in one of the system paths if sys . platform . lower ( ) . find ( "l...
def matches ( self , * args , ** kwargs ) : """Test if a request matches a : ref : ` message spec < message spec > ` . Returns ` ` True ` ` or ` ` False ` ` ."""
request = make_prototype_request ( * args , ** kwargs ) if self . _prototype . opcode not in ( None , request . opcode ) : return False if self . _prototype . is_command not in ( None , request . is_command ) : return False for name in dir ( self . _prototype ) : if name . startswith ( '_' ) or name in requ...
def add_proof ( self , text , publisher_account , keeper ) : """Add a proof to the DDO , based on the public _ key id / index and signed with the private key add a static proof to the DDO , based on one of the public keys ."""
# just incase clear out the current static proof property self . _proof = None self . _proof = { 'type' : PROOF_TYPE , 'created' : DDO . _get_timestamp ( ) , 'creator' : publisher_account . address , 'signatureValue' : keeper . sign_hash ( text , publisher_account ) , }
def set_default ( self , section , option , default ) : """If the option did not exist , create a default value ."""
if not self . parser . has_option ( section , option ) : self . parser . set ( section , option , default )
def create_project ( name , include_examples = True ) : '''creates the initial project skeleton and files : param name : the project name : return :'''
# from the start directory , create a project directory with the project name path = "{}/{}" . format ( os . getcwd ( ) , name ) if os . path . exists ( path ) : return None , "path {} already exists" . format ( path ) print ( bright ( "creating new ezo project '{}" . format ( name ) ) ) # make project directory os...
def fit ( self , dpp_vector ) : """Finds row of self . dpp _ matrix most closely corresponds to X by means of Kendall tau distance . https : / / en . wikipedia . org / wiki / Kendall _ tau _ distance Args : dpp _ vector ( np . array ) : Array with shape ( n _ components , )"""
# decompose X and generate the rankings of the elements in the # decomposed matrix dpp_vector_decomposed = self . mf_model . transform ( dpp_vector ) dpp_vector_ranked = stats . rankdata ( dpp_vector_decomposed , method = 'dense' , ) max_agreement_index = None max_agreement = - 1 # min value of Kendall Tau agremment fo...
def get_parser ( commands ) : """Generate argument parser given a list of subcommand specifications . : type commands : list of ( str , function , function ) : arg commands : Each element must be a tuple ` ` ( name , adder , runner ) ` ` . : param name : subcommand : param adder : a function takes one obj...
parser = argparse . ArgumentParser ( formatter_class = Formatter , description = __doc__ , epilog = EPILOG , ) subparsers = parser . add_subparsers ( ) for ( name , adder , runner ) in commands : subp = subparsers . add_parser ( name , formatter_class = Formatter , description = runner . __doc__ and textwrap . dede...
def _parse_ppm_segment ( self , fptr ) : """Parse the PPM segment . Parameters fptr : file Open file object . Returns PPMSegment The current PPM segment ."""
offset = fptr . tell ( ) - 2 read_buffer = fptr . read ( 3 ) length , zppm = struct . unpack ( '>HB' , read_buffer ) numbytes = length - 3 read_buffer = fptr . read ( numbytes ) return PPMsegment ( zppm , read_buffer , length , offset )
def process_npdu ( self , npdu ) : """encode NPDUs from the service access point and send them downstream ."""
if _debug : DeviceToDeviceServerService . _debug ( "process_npdu %r" , npdu ) # broadcast messages go to peers if npdu . pduDestination . addrType == Address . localBroadcastAddr : destList = self . connections . keys ( ) else : if npdu . pduDestination not in self . connections : if _debug : ...
def q_mentioned_fields ( q , model ) : """Returns list of field names mentioned in Q object . Q ( a _ _ isnull = True , b = F ( ' c ' ) ) - > [ ' a ' , ' b ' , ' c ' ]"""
query = Query ( model ) where = query . _add_q ( q , used_aliases = set ( ) , allow_joins = False ) [ 0 ] return list ( sorted ( set ( expression_mentioned_fields ( where ) ) ) )
def add_subjects_to_group ( self , group_id , body , ** kwargs ) : # noqa : E501 """Add members to a group . # noqa : E501 An endpoint for adding users and API keys to a group . * * Example usage : * * ` curl - X POST https : / / api . us - east - 1 . mbedcloud . com / v3 / policy - groups / { group - id } - d ' ...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'asynchronous' ) : return self . add_subjects_to_group_with_http_info ( group_id , body , ** kwargs ) # noqa : E501 else : ( data ) = self . add_subjects_to_group_with_http_info ( group_id , body , ** kwargs ) # noqa : E501 return data
def append ( self , term , type = None , value = None ) : """Appends the given term to the taxonomy and tags it as the given type . Optionally , a disambiguation value can be supplied . For example : taxonomy . append ( " many " , " quantity " , " 50-200 " )"""
term = self . _normalize ( term ) type = self . _normalize ( type ) self . setdefault ( term , ( odict ( ) , odict ( ) ) ) [ 0 ] . push ( ( type , True ) ) self . setdefault ( type , ( odict ( ) , odict ( ) ) ) [ 1 ] . push ( ( term , True ) ) self . _values [ term ] = value
def get_facility_status ( self , facility ) : """Get the current status of a Guest Additions facility . in facility of type : class : ` AdditionsFacilityType ` Facility to check status for . out timestamp of type int Timestamp ( in ms ) of last status update seen by the host . return status of type : clas...
if not isinstance ( facility , AdditionsFacilityType ) : raise TypeError ( "facility can only be an instance of type AdditionsFacilityType" ) ( status , timestamp ) = self . _call ( "getFacilityStatus" , in_p = [ facility ] ) status = AdditionsFacilityStatus ( status ) return ( status , timestamp )
def to_iso_time_string ( self ) -> str : """Return the iso time string only"""
short_time = self . to_short_time_string ( ) second = self . time . second return f"{short_time}:{second:02}"
def acquire ( self ) : """Acquire the lock Raises : IOError : if the call to flock fails"""
self . _fd = open ( self . _path , mode = 'w+' ) os . chmod ( self . _path , 0o660 ) fcntl . flock ( self . _fd , self . _op )
def average_time_bounds ( ds ) : """Return the average of each set of time bounds in the Dataset . Useful for creating a new time array to replace the Dataset ' s native time array , in the case that the latter matches either the start or end bounds . This can cause errors in grouping ( akin to an off - by - ...
bounds = ds [ TIME_BOUNDS_STR ] new_times = bounds . mean ( dim = BOUNDS_STR , keep_attrs = True ) new_times = new_times . drop ( TIME_STR ) . rename ( TIME_STR ) new_times [ TIME_STR ] = new_times return new_times
def mqtt_subscribe ( self , topics , packet_id ) : """: param topics : array of topics [ { ' filter ' : ' / a / b ' , ' qos ' : 0x00 } , . . . ] : return :"""
# Build and send SUBSCRIBE message subscribe = SubscribePacket . build ( topics , packet_id ) yield from self . _send_packet ( subscribe ) # Wait for SUBACK is received waiter = futures . Future ( loop = self . _loop ) self . _subscriptions_waiter [ subscribe . variable_header . packet_id ] = waiter return_codes = yiel...
def _characterize_header ( self , header , hgroups ) : """Characterize header groups into different data types ."""
out = [ ] for h in [ header [ g [ 0 ] ] for g in hgroups ] : this_ctype = None for ctype , names in self . _col_types . items ( ) : if h . startswith ( names ) : this_ctype = ctype break out . append ( this_ctype ) return out
def get_webpack ( request , name = 'DEFAULT' ) : """Get the Webpack object for a given webpack config . Called at most once per request per config name ."""
if not hasattr ( request , '_webpack_map' ) : request . _webpack_map = { } wp = request . _webpack_map . get ( name ) if wp is None : wp = request . _webpack_map [ name ] = Webpack ( request , name ) return wp
def walk_snmp_values ( sess , helper , oid , check ) : """return a snmp value or exits the plugin with unknown"""
try : snmp_walk = sess . walk_oid ( oid ) result_list = [ ] for x in range ( len ( snmp_walk ) ) : result_list . append ( snmp_walk [ x ] . val ) if result_list != [ ] : return result_list else : raise SnmpException ( "No content" ) except SnmpException : helper . exit ( ...
def int ( self , q ) : """Converts the chimera _ index ` q ` into an linear _ index Parameters q : tuple The chimera _ index node label Returns r : int The linear _ index node label corresponding to q"""
u , w , k , z = q m , m1 = self . args return ( ( m * u + w ) * 12 + k ) * m1 + z
def newLayer ( self , name , color = None ) : """Make a new layer with * * name * * and * * color * * . * * name * * must be a : ref : ` type - string ` and * * color * * must be a : ref : ` type - color ` or ` ` None ` ` . > > > layer = font . newLayer ( " My Layer 3 " ) The will return the newly created ...
name = normalizers . normalizeLayerName ( name ) if name in self . layerOrder : layer = self . getLayer ( name ) if color is not None : layer . color = color return layer if color is not None : color = normalizers . normalizeColor ( color ) layer = self . _newLayer ( name = name , color = color ...
def get_occurrence ( event_id , occurrence_id = None , year = None , month = None , day = None , hour = None , minute = None , second = None , tzinfo = None ) : """Because occurrences don ' t have to be persisted , there must be two ways to retrieve them . both need an event , but if its persisted the occurrence ...
if ( occurrence_id ) : occurrence = get_object_or_404 ( Occurrence , id = occurrence_id ) event = occurrence . event elif None not in ( year , month , day , hour , minute , second ) : event = get_object_or_404 ( Event , id = event_id ) date = timezone . make_aware ( datetime . datetime ( int ( year ) , ...
def maximum_address ( self ) : """The maximum address of the data , or ` ` None ` ` if the file is empty ."""
maximum_address = self . _segments . maximum_address if maximum_address is not None : maximum_address //= self . word_size_bytes return maximum_address
def initLogging ( verbosity = 0 , name = "SCOOP" ) : """Creates a logger ."""
global loggingConfig verbose_levels = { - 2 : "CRITICAL" , - 1 : "ERROR" , 0 : "WARNING" , 1 : "INFO" , 2 : "DEBUG" , 3 : "DEBUG" , 4 : "NOSET" , } log_handlers = { "console" : { "class" : "logging.StreamHandler" , "formatter" : "{name}Formatter" . format ( name = name ) , "stream" : "ext://sys.stderr" , } , } loggingC...
def get_revision ( self , id , rev , ** kwargs ) : """Get specific audited revision of this build configuration This method makes a synchronous HTTP request by default . To make an asynchronous HTTP request , please define a ` callback ` function to be invoked when receiving the response . > > > def callbac...
kwargs [ '_return_http_data_only' ] = True if kwargs . get ( 'callback' ) : return self . get_revision_with_http_info ( id , rev , ** kwargs ) else : ( data ) = self . get_revision_with_http_info ( id , rev , ** kwargs ) return data
def match ( self , objects : List [ Any ] ) -> bool : """Return True if the list of objects matches the expression ."""
s = self . _make_string ( objects ) m = self . _compiled_expression . match ( s ) return m is not None
def run_ding0 ( self , session , mv_grid_districts_no = None , debug = False , export_figures = False ) : """Let DING0 run by shouting at this method ( or just call it from NetworkDing0 instance ) . This method is a wrapper for the main functionality of DING0. Parameters session : sqlalchemy . orm . session...
if debug : start = time . time ( ) # STEP 1 : Import MV Grid Districts and subjacent objects self . import_mv_grid_districts ( session , mv_grid_districts_no = mv_grid_districts_no ) # STEP 2 : Import generators self . import_generators ( session , debug = debug ) # STEP 3 : Parametrize MV grid self . mv_parametriz...
def _generate_sequences ( self , primary_label , secondary_label , ngrams ) : """Generates aligned sequences between each witness labelled ` primary _ label ` and each witness labelled ` secondary _ label ` , based around ` ngrams ` . : param primary _ label : label for one side of the pairs of witnesses to...
cols = [ constants . WORK_FIELDNAME , constants . SIGLUM_FIELDNAME ] primary_works = self . _matches [ self . _matches [ constants . LABEL_FIELDNAME ] == primary_label ] [ cols ] . drop_duplicates ( ) secondary_works = self . _matches [ self . _matches [ constants . LABEL_FIELDNAME ] == secondary_label ] [ cols ] . dro...
def GetMemSharedMB ( self ) : '''Retrieves the amount of physical memory associated with this virtual machine that is copy - on - write ( COW ) shared on the host .'''
counter = c_uint ( ) ret = vmGuestLib . VMGuestLib_GetMemSharedMB ( self . handle . value , byref ( counter ) ) if ret != VMGUESTLIB_ERROR_SUCCESS : raise VMGuestLibException ( ret ) return counter . value
def sls_build ( repository , tag = 'latest' , base = 'opensuse/python' , mods = None , dryrun = False , ** kwargs ) : '''. . versionchanged : : 2018.3.0 The repository and tag must now be passed separately using the ` ` repository ` ` and ` ` tag ` ` arguments , rather than together in the ( now deprecated ) ...
create_kwargs = __utils__ [ 'args.clean_kwargs' ] ( ** copy . deepcopy ( kwargs ) ) for key in ( 'image' , 'name' , 'cmd' , 'interactive' , 'tty' , 'extra_filerefs' ) : try : del create_kwargs [ key ] except KeyError : pass # start a new container ret = create ( image = base , cmd = 'sleep infin...
def print_solution ( model , solver ) : """Prints the solution associated with solver . If solver has already had Solve ( ) called on it , prints the solution . This includes each variable and its assignment , along with the objective function and its optimal value . If solver has not had Solve ( ) called o...
model_proto = model . Proto ( ) response_proto = solver . ResponseProto ( ) variables_in_objective_map = { } maximization = False if model_proto . HasField ( 'objective' ) : objective = model_proto . objective for i in range ( len ( objective . vars ) ) : variables_in_objective_map [ objective . vars [ ...
def numpy_bins_with_mask ( self ) -> Tuple [ np . ndarray , np . ndarray ] : """Bins in the numpy format , including the gaps in inconsecutive binnings . Returns edges , mask : np . ndarray See Also bin _ utils . to _ numpy _ bins _ with _ mask"""
bwm = to_numpy_bins_with_mask ( self . bins ) if not self . includes_right_edge : bwm [ 0 ] . append ( np . inf ) return bwm
def _run ( self , stdout = subprocess . PIPE ) : '''Internal . Starts running this command and those before it . Can only be called once . : param stdout : Where to send stdout for this link in the chain .'''
assert self . _pop is None if self . _input is not None : self . _input . _run ( ) cwd = ( self . _cwd if self . _cwd else os . getcwd ( ) ) + '/' def glob_or ( expr ) : res = [ expr ] if self . _expand and ( '*' in expr or '?' in expr ) : if expr and expr [ 0 ] != '/' : expr = cwd + exp...
def run ( self ) : """this is the actual execution of the ReadProbes thread : continuously read values from the probes"""
if self . probes is None : self . _stop = True while True : if self . _stop : break self . probes_values = { instrument_name : { probe_name : probe_instance . value for probe_name , probe_instance in probe . items ( ) } for instrument_name , probe in self . probes . items ( ) } self . updateProg...
def XYZ_to_lbd ( X , Y , Z , degree = False ) : """NAME : XYZ _ to _ lbd PURPOSE : transform from rectangular Galactic coordinates to spherical Galactic coordinates ( works with vector inputs ) INPUT : X - component towards the Galactic Center ( in kpc ; though this obviously does not matter ) ) Y - com...
# Whether to use degrees and scalar input is handled by decorators d = nu . sqrt ( X ** 2. + Y ** 2. + Z ** 2. ) b = nu . arcsin ( Z / d ) cosl = X / d / nu . cos ( b ) sinl = Y / d / nu . cos ( b ) l = nu . arcsin ( sinl ) l [ cosl < 0. ] = nu . pi - l [ cosl < 0. ] l [ ( cosl >= 0. ) * ( sinl < 0. ) ] += 2. * nu . pi...
def index_impl ( self ) : """Return { runName : { tagName : { displayName : . . . , description : . . . } } } ."""
if self . _db_connection_provider : # Read tags from the database . db = self . _db_connection_provider ( ) cursor = db . execute ( ''' SELECT Tags.tag_name, Tags.display_name, Runs.run_name FROM Tags JOIN Runs ON Tags.run_id = Runs.run_id ...
def _attr_to_property ( self , attr ) : """Common routine to translate a python attribute name to a property name and return the appropriate property ."""
# get the property prop = self . _properties . get ( attr ) if not prop : raise PropertyError ( attr ) # found it return prop
def to_dict ( self ) : """Get a dictionary serialization of the object to convert into a Json object . Returns dict"""
doc = { 'filename' : self . filename , 'mimeType' : self . mime_type } # Add path if present if self . filename != self . path : doc [ 'path' ] = self . path return doc
def getserialized ( self , key , decoder_func = None , ** kwargs ) : """Gets the setting value as a : obj : ` dict ` or : obj : ` list ` trying : meth : ` json . loads ` , followed by : meth : ` yaml . load ` . : rtype : dict , list"""
value = self . get ( key , cast_func = None , ** kwargs ) if isinstance ( value , ( dict , list , tuple ) ) or value is None : return value if decoder_func : return decoder_func ( value ) try : o = json . loads ( value ) return o except json . decoder . JSONDecodeError : pass try : o = yaml . lo...
def simple_slice ( value ) : """> > > simple _ slice ( ' 2:5 ' ) (2 , 5) > > > simple _ slice ( ' 0 : None ' ) (0 , None )"""
try : start , stop = value . split ( ':' ) start = ast . literal_eval ( start ) stop = ast . literal_eval ( stop ) if start is not None and stop is not None : assert start < stop except Exception : raise ValueError ( 'invalid slice: %s' % value ) return ( start , stop )
def autocomplete ( request , app_label = None , model = None ) : """returns ` ` \\ n ` ` delimited strings in the form < tag > | | ( # ) GET params are ` ` q ` ` , ` ` limit ` ` , ` ` counts ` ` , ` ` q ` ` is what the user has typed , ` ` limit ` ` defaults to 10 , and ` ` counts ` ` can be " model " , " all "...
# get the relevent model if applicable if app_label and model : try : model = ContentType . objects . get ( app_label = app_label , model = model ) except : raise Http404 else : model = None if not request . GET . has_key ( "q" ) : raise Http404 else : q = request . GET [ "q" ] # cou...
def WorkersDensity ( dataTasks ) : """Return the worker density data for the graph ."""
start_time , end_time = getTimes ( dataTasks ) graphdata = [ ] for name in getWorkersName ( dataTasks ) : vals = dataTasks [ name ] if hasattr ( vals , 'values' ) : # Data from worker workerdata = [ ] print ( "Plotting density map for {}" . format ( name ) ) # We only have 800 pixels ...
def _set_vni_add ( self , v , load = False ) : """Setter method for vni _ add , mapped from YANG variable / rbridge _ id / evpn _ instance / vni / vni _ add ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ vni _ add is considered as a private method . Bac...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = vni_add . vni_add , is_container = 'container' , presence = False , yang_name = "vni-add" , rest_name = "" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , register_paths = True , extens...
def setup_signal_handlers ( self ) : """Called when a child process is spawned to register the signal handlers"""
LOGGER . debug ( 'Registering signal handlers' ) signal . signal ( signal . SIGABRT , self . on_sigabrt )
def inserir ( self , id_script_type , script , model , description ) : """Inserts a new Script and returns its identifier . : param id _ script _ type : Identifier of the Script Type . Integer value and greater than zero . : param script : Script name . String with a minimum 3 and maximum of 40 characters : p...
script_map = dict ( ) script_map [ 'id_script_type' ] = id_script_type script_map [ 'script' ] = script script_map [ 'model' ] = model script_map [ 'description' ] = description code , xml = self . submit ( { 'script' : script_map } , 'POST' , 'script/' ) return self . response ( code , xml )
def does_external_program_run ( prog , verbose ) : """Test to see if the external programs can be run ."""
try : with open ( '/dev/null' ) as null : subprocess . call ( [ prog , '-h' ] , stdout = null , stderr = null ) result = True except OSError : if verbose > 1 : print ( "couldn't run {}" . format ( prog ) ) result = False return result
def push ( self , remote , branch = None ) : '''Push a repository : param remote : git - remote instance : param branch : name of the branch to push : return : PushInfo , git push output lines'''
pb = ProgressBar ( ) pb . setup ( self . name , ProgressBar . Action . PUSH ) if branch : result = remote . push ( branch , progress = pb ) else : # pragma : no cover result = remote . push ( progress = pb ) print ( ) return result , pb . other_lines
async def update_state ( self , short_name , state ) : """Set the current state of a service . If the state is unchanged from a previous attempt , this routine does nothing . Args : short _ name ( string ) : The short name of the service state ( int ) : The new stae of the service"""
if short_name not in self . services : raise ArgumentError ( "Service name is unknown" , short_name = short_name ) if state not in states . KNOWN_STATES : raise ArgumentError ( "Invalid service state" , state = state ) serv = self . services [ short_name ] [ 'state' ] if serv . state == state : return updat...
def extract_number ( text ) : """Extract digit character from text ."""
result = list ( ) chunk = list ( ) valid_char = set ( ".1234567890" ) for char in text : if char in valid_char : chunk . append ( char ) else : result . append ( "" . join ( chunk ) ) chunk = list ( ) result . append ( "" . join ( chunk ) ) result_new = list ( ) for number in result : ...
def _set_ssh ( self , v , load = False ) : """Setter method for ssh , mapped from YANG variable / rbridge _ id / ssh ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ ssh is considered as a private method . Backends looking to populate this variable should...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = ssh . ssh , is_container = 'container' , presence = False , yang_name = "ssh" , rest_name = "ssh" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , register_paths = True , extensions = { ...