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def p_scope ( p ) : """scope : ' , ' SCOPE ' ( ' metaElementList ' ) '"""
slist = p [ 4 ] scopes = OrderedDict ( ) for i in ( 'CLASS' , 'ASSOCIATION' , 'INDICATION' , 'PROPERTY' , 'REFERENCE' , 'METHOD' , 'PARAMETER' , 'ANY' ) : scopes [ i ] = i in slist p [ 0 ] = scopes
def ecdh_derive_key ( key , epk , apu , apv , alg , dk_len ) : """ECDH key derivation , as defined by JWA : param key : Elliptic curve private key : param epk : Elliptic curve public key : param apu : PartyUInfo : param apv : PartyVInfo : param alg : Algorithm identifier : param dk _ len : Length of key...
# Compute shared secret shared_key = key . exchange ( ec . ECDH ( ) , epk ) # Derive the key # AlgorithmID | | PartyUInfo | | PartyVInfo | | SuppPubInfo otherInfo = bytes ( alg ) + struct . pack ( "!I" , len ( apu ) ) + apu + struct . pack ( "!I" , len ( apv ) ) + apv + struct . pack ( "!I" , dk_len ) return concat_sha...
def get_inner_data ( dictionary ) : """Gets 2nd - level data into 1st - level dictionary : param dictionary : dict : return : with 2nd - level data"""
out = { } for key in dictionary . keys ( ) : inner_keys = dictionary [ key ] . keys ( ) for inner_key in inner_keys : new_key = key + " " + inner_key # concatenate out [ new_key ] = dictionary [ key ] [ inner_key ] return out
def calculate_hex ( hex_string ) : """Credit for conversion to itsnotlupus / vesync _ wsproxy"""
hex_conv = hex_string . split ( ':' ) converted_hex = ( int ( hex_conv [ 0 ] , 16 ) + int ( hex_conv [ 1 ] , 16 ) ) / 8192 return converted_hex
def parse_property_array ( parser , event , node ) : # pylint : disable = unused - argument """Parse CIM / XML PROPERTY . ARRAY element and return CIMProperty"""
name = _get_required_attribute ( node , 'NAME' ) cim_type = _get_required_attribute ( node , 'TYPE' ) # TODO 2/16 KS : array _ size here is unused . It is valid attribute . array_size = _get_attribute ( node , 'ARRAYSIZE' ) class_origin = _get_attribute ( node , 'CLASSORIGIN' ) propagated = _get_attribute ( node , 'PRO...
def datasets ( self , libref : str = '' ) -> str : """This method is used to query a libref . The results show information about the libref including members . : param libref : the libref to query : return :"""
code = "proc datasets" if libref : code += " dd=" + libref code += "; quit;" if self . nosub : print ( code ) else : if self . results . lower ( ) == 'html' : ll = self . _io . submit ( code , "html" ) if not self . batch : self . DISPLAY ( self . HTML ( ll [ 'LST' ] ) ) ...
def summary_table ( pairs , key_header , descr_header = "Description" , width = 78 ) : """List of one - liner strings containing a reStructuredText summary table for the given pairs ` ` ( name , object ) ` ` ."""
from . lazy_text import rst_table , small_doc max_width = width - max ( len ( k ) for k , v in pairs ) table = [ ( k , small_doc ( v , max_width = max_width ) ) for k , v in pairs ] return rst_table ( table , ( key_header , descr_header ) )
def add_environment ( self , environment , sync = True ) : """add an environment to this OS instance . : param environment : the environment to add on this OS instance : param sync : If sync = True ( default ) synchronize with Ariane server . If sync = False , add the environment object on list to be added on...
LOGGER . debug ( "OSInstance.add_environment" ) if not sync : self . environment_2_add . append ( environment ) else : if environment . id is None : environment . save ( ) if self . id is not None and environment . id is not None : params = { 'id' : self . id , 'environmentID' : environment ...
async def set_utc ( pyvlx ) : """Enable house status monitor ."""
setutc = SetUTC ( pyvlx = pyvlx ) await setutc . do_api_call ( ) if not setutc . success : raise PyVLXException ( "Unable to set utc." )
def iter_doc_filepaths ( self , ** kwargs ) : """Generator that iterates over all detected documents . and returns the filesystem path to each doc . Order is by shard , but arbitrary within shards . @ TEMP not locked to prevent doc creation / deletion"""
for shard in self . _shards : for doc_id , blob in shard . iter_doc_filepaths ( ** kwargs ) : yield doc_id , blob
def add_pyspark_path ( ) : """Add PySpark to the library path based on the value of SPARK _ HOME ."""
try : spark_home = os . environ [ 'SPARK_HOME' ] sys . path . append ( os . path . join ( spark_home , 'python' ) ) py4j_src_zip = glob ( os . path . join ( spark_home , 'python' , 'lib' , 'py4j-*-src.zip' ) ) if len ( py4j_src_zip ) == 0 : raise ValueError ( 'py4j source archive not found in %s...
def connect ( self , driver ) : """Connect using the Telnet protocol specific FSM ."""
# 0 1 2 3 events = [ ESCAPE_CHAR , driver . press_return_re , driver . standby_re , driver . username_re , # 4 5 6 7 driver . password_re , driver . more_re , self . device . prompt_re , driver . rommon_re , # 8 9 10 11 12 driver . unable_to_connect_re , driver . timeout_re , pexpect . TIMEOUT , PASSWORD_OK , driver . ...
def get_caller ( stack_index = 2 , root_dir = None ) : '''Returns file . py : lineno of your caller . A stack _ index of 2 will provide the caller of the function calling this function . Notice that stack _ index of 2 or more will fail if called from global scope .'''
caller = inspect . getframeinfo ( inspect . stack ( ) [ stack_index ] [ 0 ] ) # Trim the filenames for readability . filename = caller . filename if root_dir is not None : filename = re . sub ( "^" + root_dir + "/" , "" , filename ) return "%s:%d" % ( filename , caller . lineno )
def set_config ( self , key , value ) : '''set { key : value } paris to self . config'''
self . config = self . read_file ( ) self . config [ key ] = value self . write_file ( )
def get_historical_minute_data ( self , ticker : str ) : """Request historical 5 minute data from DTN ."""
start = self . _start stop = self . _stop if len ( stop ) > 4 : stop = stop [ : 4 ] if len ( start ) > 4 : start = start [ : 4 ] for year in range ( int ( start ) , int ( stop ) + 1 ) : beg_time = ( '%s0101000000' % year ) end_time = ( '%s1231235959' % year ) msg = "HIT,%s,60,%s,%s,,,,1,,,s\r\n" % (...
def get_var_name ( self , i ) : """Return variable name"""
method = "get_var_name" A = None metadata = { method : i } send_array ( self . socket , A , metadata ) A , metadata = recv_array ( self . socket , poll = self . poll , poll_timeout = self . poll_timeout , flags = self . zmq_flags ) return metadata [ method ]
def _set_dxproject_id ( self , latest_project = False ) : """Searches for the project in DNAnexus based on the input arguments when instantiating the class . If multiple projects are found based on the search criteria , an exception will be raised . A few various search strategies are employed , based on the in...
dx_project_props = { } if self . library_name : dx_project_props [ "library_name" ] = self . library_name if self . uhts_run_name : dx_project_props [ "seq_run_name" ] = self . uhts_run_name if self . sequencing_lane : dx_project_props [ "seq_lane_index" ] = str ( self . sequencing_lane ) dx_proj = "" if se...
def groupfinder ( userid , request ) : """Default groupfinder implementaion for pyramid applications : param userid : : param request : : return :"""
if userid and hasattr ( request , "user" ) and request . user : groups = [ "group:%s" % g . id for g in request . user . groups ] return groups return [ ]
def policy_assignment_create ( name , scope , definition_name , ** kwargs ) : '''. . versionadded : : 2019.2.0 Create a policy assignment . : param name : The name of the policy assignment to create . : param scope : The scope of the policy assignment . : param definition _ name : The name of the policy def...
polconn = __utils__ [ 'azurearm.get_client' ] ( 'policy' , ** kwargs ) # " get " doesn ' t work for built - in policies per https : / / github . com / Azure / azure - cli / issues / 692 # Uncomment this section when the ticket above is resolved . # BEGIN # definition = policy _ definition _ get ( # name = definition _ ...
def _parse_boolean ( value ) : """Coerce value into an bool . : param str value : Value to parse . : returns : bool or None if the value is not a boolean string ."""
value = value . lower ( ) if value in _true_strings : return True elif value in _false_strings : return False else : return None
def get_authenticate_header ( self , request ) : """If a request is unauthenticated , determine the WWW - Authenticate header to use for 401 responses , if any ."""
authenticators = self . get_authenticators ( ) if authenticators : return authenticators [ 0 ] . authenticate_header ( request )
def from_statement ( cls , statement ) : """Create a selection function from a statement"""
if statement [ 0 ] in [ "TS" , "TIMESTAMP" , "UTCTIMESTAMP" , "UTCTS" ] : return TimestampFunction . from_statement ( statement ) elif statement [ 0 ] in [ "NOW" , "UTCNOW" ] : return NowFunction . from_statement ( statement ) else : raise SyntaxError ( "Unknown function %r" % statement [ 0 ] )
def _find_highest_supported_command ( self , * segment_classes , ** kwargs ) : """Search the BPD for the highest supported version of a segment ."""
return_parameter_segment = kwargs . get ( "return_parameter_segment" , False ) parameter_segment_name = "{}I{}S" . format ( segment_classes [ 0 ] . TYPE [ 0 ] , segment_classes [ 0 ] . TYPE [ 2 : ] ) version_map = dict ( ( clazz . VERSION , clazz ) for clazz in segment_classes ) max_version = self . bpd . find_segment_...
def getContainers ( self ) : """Return a list of all containers of this type"""
_containers = [ ] for container in self . bika_setup . bika_containers . objectValues ( ) : containertype = container . getContainerType ( ) if containertype and containertype . UID ( ) == self . UID ( ) : _containers . append ( container ) return _containers
def has ( prop , object_or_dct ) : """Implementation of ramda has : param prop : : param object _ or _ dct : : return :"""
return prop in object_or_dct if isinstance ( dict , object_or_dct ) else hasattr ( object_or_dct , prop )
def _add_consequences ( self , variant_obj , raw_variant_line ) : """Add the consequences found for a variant Args : variant _ obj ( puzzle . models . Variant ) raw _ variant _ line ( str ) : A raw vcf variant line"""
consequences = [ ] for consequence in SO_TERMS : if consequence in raw_variant_line : consequences . append ( consequence ) variant_obj . consequences = consequences
def pin_command ( self ) : """Compose pip - compile shell command"""
parts = [ 'pip-compile' , '--no-header' , '--verbose' , '--rebuild' , '--no-index' , '--output-file' , self . outfile , self . infile , ] if OPTIONS [ 'upgrade' ] : parts . insert ( 3 , '--upgrade' ) if self . add_hashes : parts . insert ( 1 , '--generate-hashes' ) return parts
def is_marginable ( self ) : """True if adding counts across this dimension axis is meaningful ."""
return self . dimension_type not in { DT . CA , DT . MR , DT . MR_CAT , DT . LOGICAL }
def dst ( self , dt , is_dst = None ) : '''See datetime . tzinfo . dst The is _ dst parameter may be used to remove ambiguity during DST transitions . > > > from pytz import timezone > > > tz = timezone ( ' America / St _ Johns ' ) > > > normal = datetime ( 2009 , 9 , 1) > > > tz . dst ( normal ) date...
if dt is None : return None elif dt . tzinfo is not self : dt = self . localize ( dt , is_dst ) return dt . tzinfo . _dst else : return self . _dst
def _hook_mem_unmapped ( self , uc , access , address , size , value , user_data , size_extension = True ) : # pylint : disable = unused - argument """This callback is called when unicorn needs to access data that ' s not yet present in memory ."""
# FIXME check angr hooks at ` address ` if size_extension : start = address & ( 0xfffffffffffff0000 ) length = ( ( address + size + 0xffff ) & ( 0xfffffffffffff0000 ) ) - start else : start = address & ( 0xffffffffffffff000 ) length = ( ( address + size + 0xfff ) & ( 0xffffffffffffff000 ) ) - start if (...
def _parseSections ( self , data ) : """Parse data and separate sections . Returns dictionary that maps section name to section data . @ param data : Multiline data . @ return : Dictionary that maps section names to section data ."""
section_dict = { } lines = data . splitlines ( ) idx = 0 numlines = len ( lines ) section = None while idx < numlines : line = lines [ idx ] idx += 1 mobj = re . match ( '^(\w[\w\s\(\)]+[\w\)])\s*:$' , line ) if mobj : section = mobj . group ( 1 ) section_dict [ section ] = [ ] else ...
def emulate_network ( network_constraints , roles = None , inventory_path = None , extra_vars = None ) : """Emulate network links . Read ` ` network _ constraints ` ` and apply ` ` tc ` ` rules on all the nodes . Constraints are applied between groups of machines . Theses groups are described in the ` ` netwo...
# 1 ) Retrieve the list of ips for all nodes ( Ansible ) # 2 ) Build all the constraints ( Python ) # { source : src , target : ip _ dest , device : if , rate : x , delay : y } # 3 ) Enforce those constraints ( Ansible ) if not network_constraints : return if roles is None and inventory is None : raise ValueErr...
def rmon_alarm_entry_alarm_owner ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) rmon = ET . SubElement ( config , "rmon" , xmlns = "urn:brocade.com:mgmt:brocade-rmon" ) alarm_entry = ET . SubElement ( rmon , "alarm-entry" ) alarm_index_key = ET . SubElement ( alarm_entry , "alarm-index" ) alarm_index_key . text = kwargs . pop ( 'alarm_index' ) alarm_owner = ET . ...
def from_tgt ( ksoc , tgt , key ) : """Sets up the kerberos object from tgt and the session key . Use this function when pulling the TGT from ccache file ."""
kc = KerbrosComm ( None , ksoc ) kc . kerberos_TGT = tgt kc . kerberos_cipher_type = key [ 'keytype' ] kc . kerberos_session_key = Key ( kc . kerberos_cipher_type , key [ 'keyvalue' ] ) kc . kerberos_cipher = _enctype_table [ kc . kerberos_cipher_type ] return kc
def eigenvalues_ ( self ) : """The eigenvalues associated with each principal component ."""
utils . validation . check_is_fitted ( self , 's_' ) return np . square ( self . s_ ) . tolist ( )
def describe_resource ( self , resource_path ) : """Describes a resource based on its resource path ( the URL path modulo host part ) . : Parameters : - ` resource _ path ` : The path of the resource to describe , for example , ` / api / v1 / namespaces / default / replicationcontrollers / webserver - rc `"""
res = self . execute_operation ( method = "GET" , ops_path = resource_path ) return res
def do_mute ( self , sender , body , args ) : """Temporarily mutes chatroom for a user"""
if sender . get ( 'MUTED' ) : self . send_message ( 'you are already muted' , sender ) else : self . broadcast ( '%s has muted this chatroom' % ( sender [ 'NICK' ] , ) ) sender [ 'QUEUED_MESSAGES' ] = [ ] sender [ 'MUTED' ] = True
def get_connected_components_as_subgraphs ( graph ) : """Finds all connected components of the graph . Returns a list of graph objects , each representing a connected component . Returns an empty list for an empty graph ."""
components = get_connected_components ( graph ) list_of_graphs = [ ] for c in components : edge_ids = set ( ) nodes = [ graph . get_node ( node ) for node in c ] for n in nodes : # - - Loop through the edges in each node , to determine if it should be included for e in n [ 'edges' ] : # - - Only add...
def PartialDynamicSystem ( self , ieq , variable ) : """returns dynamical system blocks associated to output variable"""
if ieq == 0 : # w2 = Rw1 if variable == self . physical_nodes [ 0 ] . variable : # w1 = w2 / R return [ Gain ( self . physical_nodes [ 1 ] . variable , variable , 1 / self . ratio ) ] elif variable == self . physical_nodes [ 1 ] . variable : # w2 = Rw1 return [ Gain ( self . physical_nodes [ 0 ]...
def load ( self , context ) : """Returns the plugin , if possible . Args : context : The TBContext flags . Returns : A InteractiveInferencePlugin instance or None if it couldn ' t be loaded ."""
try : # pylint : disable = g - import - not - at - top , unused - import import tensorflow except ImportError : return # pylint : disable = line - too - long , g - import - not - at - top from tensorboard . plugins . interactive_inference . interactive_inference_plugin import InteractiveInferencePlugin return I...
def _is_compatible_with ( self , other ) : """Return True if names are not incompatible . This checks that the gender of titles and compatibility of suffixes"""
title = self . _compare_title ( other ) suffix = self . _compare_suffix ( other ) return title and suffix
def imulti_stats ( self , start = 0 , end = - 1 , series = None , fields = None , stats = None ) : '''Perform cross multivariate statistics calculation of this : class : ` ColumnTS ` and other optional * series * from * start * to * end * . : parameter start : the start rank . : parameter start : the end ra...
stats = stats or self . default_multi_stats backend = self . read_backend return backend . execute ( backend . structure ( self ) . imulti_stats ( start , end , fields , series , stats ) , self . _stats )
def create_parsing_plan ( self , desired_type : Type [ T ] , filesystem_object : PersistedObject , logger : Logger , _main_call : bool = True ) : """Implements the abstract parent method by using the recursive parsing plan impl . Subclasses wishing to produce their own parsing plans should rather override _ creat...
in_root_call = False # - - log msg only for the root call , not for the children that will be created by the code below if _main_call and ( not hasattr ( AnyParser . thrd_locals , 'flag_init' ) or AnyParser . thrd_locals . flag_init == 0 ) : # print ( ' Building a parsing plan to parse ' + str ( filesystem _ object ) +...
def _load ( self , file_parser , section_name ) : """The current element is loaded from the configuration file , all constraints and requirements are checked ."""
# pylint : disable - msg = W0621 log = logging . getLogger ( 'argtoolbox' ) try : log . debug ( "looking for field (section=" + section_name + ") : " + self . _name ) data = None try : if self . e_type == int : data = file_parser . getint ( section_name , self . _name ) elif self...
def handle_method ( signature_node , module , object_name , cache ) : """Styles ` ` automethod ` ` entries . Adds ` ` abstract ` ` prefix to abstract methods . Adds link to originating class for inherited methods ."""
* class_names , attr_name = object_name . split ( "." ) # Handle nested classes class_ = module for class_name in class_names : class_ = getattr ( class_ , class_name , None ) if class_ is None : return attr = getattr ( class_ , attr_name ) try : inspected_attr = cache [ class_ ] [ attr_name ] d...
def parse_v2_signing_block ( self ) : """Parse the V2 signing block and extract all features"""
self . _v2_signing_data = [ ] # calling is _ signed _ v2 should also load the signature if not self . is_signed_v2 ( ) : return block_bytes = self . _v2_blocks [ self . _APK_SIG_KEY_V2_SIGNATURE ] block = io . BytesIO ( block_bytes ) view = block . getvalue ( ) # V2 signature Block data format : # * signer : # * si...
def options ( cls ) : """Provide a sorted list of options ."""
return sorted ( ( value , name ) for ( name , value ) in cls . __dict__ . items ( ) if not name . startswith ( '__' ) )
def webui ( cmd , hostport = '127.0.0.1:8800' , skip_browser = False ) : """start the webui server in foreground or perform other operation on the django application"""
dbpath = os . path . realpath ( os . path . expanduser ( config . dbserver . file ) ) if os . path . isfile ( dbpath ) and not os . access ( dbpath , os . W_OK ) : sys . exit ( 'This command must be run by the proper user: ' 'see the documentation for details' ) if cmd == 'start' : dbserver . ensure_on ( ) ...
def cli ( ctx , location , runtime , dependency_manager , output_dir , name , no_input ) : """Initialize a serverless application with a SAM template , folder structure for your Lambda functions , connected to an event source such as APIs , S3 Buckets or DynamoDB Tables . This application includes everything yo...
# All logic must be implemented in the ` do _ cli ` method . This helps ease unit tests do_cli ( ctx , location , runtime , dependency_manager , output_dir , name , no_input )
def _retrieve_remote ( fnames ) : """Retrieve remote inputs found in the same bucket as the template or metadata files ."""
for fname in fnames : if objectstore . is_remote ( fname ) : inputs = [ ] regions = [ ] remote_base = os . path . dirname ( fname ) for rfname in objectstore . list ( remote_base ) : if rfname . endswith ( tuple ( KNOWN_EXTS . keys ( ) ) ) : inputs . appen...
def eject_media ( self ) : """Ejects Virtual Media . : raises : SushyError , on an error from iLO ."""
try : super ( VirtualMedia , self ) . eject_media ( ) except sushy_exceptions . SushyError : target_uri = self . _get_action_element ( 'eject' ) . target_uri self . _conn . post ( target_uri , data = { } )
def get_reachable_volume_templates ( self , start = 0 , count = - 1 , filter = '' , query = '' , sort = '' , networks = None , scope_uris = '' , private_allowed_only = False ) : """Gets the storage templates that are connected on the specified networks based on the storage system port ' s expected network connect...
uri = self . URI + "/reachable-volume-templates" uri += "?networks={}&privateAllowedOnly={}" . format ( networks , private_allowed_only ) get_uri = self . _client . build_query_uri ( start = start , count = count , filter = filter , query = query , sort = sort , uri = uri , scope_uris = scope_uris ) return self . _clie...
def Ergun ( dp , voidage , vs , rho , mu , L = 1 ) : r'''Calculates pressure drop across a packed bed of spheres using a correlation developed in [ 1 ] _ , as shown in [ 2 ] _ and [ 3 ] _ . Eighteenth most accurate correlation overall in the review of [ 2 ] _ . Most often presented in the following form : ....
Re = dp * rho * vs / mu fp = ( 150 + 1.75 * ( Re / ( 1 - voidage ) ) ) * ( 1 - voidage ) ** 2 / ( voidage ** 3 * Re ) return fp * rho * vs ** 2 * L / dp
def _init_browser ( self ) : """Update this everytime the CERN SSO login form is refactored ."""
self . browser = splinter . Browser ( 'phantomjs' ) self . browser . visit ( self . server_url ) self . browser . find_link_by_partial_text ( "Sign in" ) . click ( ) self . browser . fill ( 'ctl00$ctl00$NICEMasterPageBodyContent$SiteContentPlaceholder$' 'txtFormsLogin' , self . user ) self . browser . fill ( 'ctl00$ctl...
def get_valid_managers ( cls , location ) : """Get the valid RepoManagers for this location ."""
def by_priority_attr ( c ) : return getattr ( c , 'priority' , 0 ) classes = sorted ( iter_subclasses ( cls ) , key = by_priority_attr , reverse = True ) all_managers = ( c ( location ) for c in classes ) return ( mgr for mgr in all_managers if mgr . is_valid ( ) )
def namePop ( ctxt ) : """Pops the top element name from the name stack"""
if ctxt is None : ctxt__o = None else : ctxt__o = ctxt . _o ret = libxml2mod . namePop ( ctxt__o ) return ret
def upsert ( self , doc , namespace , timestamp , update_spec = None ) : """Insert a document into Elasticsearch ."""
index , doc_type = self . _index_and_mapping ( namespace ) # No need to duplicate ' _ id ' in source document doc_id = u ( doc . pop ( "_id" ) ) metadata = { 'ns' : namespace , '_ts' : timestamp } # Index the source document , using lowercase namespace as index name . action = { '_op_type' : 'index' , '_index' : index ...
def save ( self ) : """Method that saves configuration parameter changes from instance of SHConfig class to global config class and to ` config . json ` file . Example of use case ` ` my _ config = SHConfig ( ) ` ` \n ` ` my _ config . instance _ id = ' < new instance id > ' ` ` \n ` ` my _ config . save ...
is_changed = False for prop in self . _instance . CONFIG_PARAMS : if getattr ( self , prop ) != getattr ( self . _instance , prop ) : is_changed = True setattr ( self . _instance , prop , getattr ( self , prop ) ) if is_changed : self . _instance . save_configuration ( )
def parse_args ( ) : """parse main ( ) args"""
description = ( "Get Wikipedia article info and Wikidata via MediaWiki APIs.\n\n" "Gets a random English Wikipedia article by default, or in the\n" "language -lang, or from the wikisite -wiki, or by specific\n" "title -title. The output is a plain text extract unless -HTML." ) epilog = ( "Powered by https://github.com/...
def laplace_crossover ( random , mom , dad , args ) : """Return the offspring of Laplace crossover on the candidates . This function performs Laplace crosssover ( LX ) , following the implementation specified in ( Deep and Thakur , " A new crossover operator for real coded genetic algorithms , " Applied Mathe...
crossover_rate = args . setdefault ( 'crossover_rate' , 1.0 ) if random . random ( ) < crossover_rate : bounder = args [ '_ec' ] . bounder a = args . setdefault ( 'lx_location' , 0 ) b = args . setdefault ( 'lx_scale' , 0.5 ) bro = copy . copy ( dad ) sis = copy . copy ( mom ) for i , ( m , d ) ...
def _get_split_rhat ( values , round_to = 2 ) : """Compute the split - rhat for a 2d array ."""
shape = values . shape if len ( shape ) != 2 : raise TypeError ( "Effective sample size calculation requires 2 dimensional arrays." ) _ , num_samples = shape num_split = num_samples // 2 # Calculate split chain mean split_chain_mean1 = np . mean ( values [ : , : num_split ] , axis = 1 ) split_chain_mean2 = np . mea...
def run_baton_query ( self , baton_binary : BatonBinary , program_arguments : List [ str ] = None , input_data : Any = None ) -> List [ Dict ] : """Runs a baton query . : param baton _ binary : the baton binary to use : param program _ arguments : arguments to give to the baton binary : param input _ data : i...
if program_arguments is None : program_arguments = [ ] baton_binary_location = os . path . join ( self . _baton_binaries_directory , baton_binary . value ) program_arguments = [ baton_binary_location ] + program_arguments _logger . info ( "Running baton command: '%s' with data '%s'" % ( program_arguments , input_da...
def sort_js_files ( js_files ) : """Sorts JavaScript files in ` js _ files ` . It sorts JavaScript files in a given ` js _ files ` into source files , mock files and spec files based on file extension . Output : * sources : source files for production . The order of source files is significant and should ...
modules = [ f for f in js_files if f . endswith ( MODULE_EXT ) ] mocks = [ f for f in js_files if f . endswith ( MOCK_EXT ) ] specs = [ f for f in js_files if f . endswith ( SPEC_EXT ) ] other_sources = [ f for f in js_files if ( not f . endswith ( MODULE_EXT ) and not f . endswith ( MOCK_EXT ) and not f . endswith ( S...
def call ( self , method , params , callback = None ) : """Call a remote method Arguments : method - remote method name params - remote method parameters Keyword Arguments : callback - callback function containing return data"""
self . _wait_for_connect ( ) self . ddp_client . call ( method , params , callback = callback )
def get_key_auth_cb ( key_filepath ) : """This is just a convenience function for key - based login ."""
def auth_cb ( ssh ) : key = ssh_pki_import_privkey_file ( key_filepath ) ssh . userauth_publickey ( key ) return auth_cb
def stringify_summary ( summary ) : """stringify summary , in order to dump json file and generate html report ."""
for index , suite_summary in enumerate ( summary [ "details" ] ) : if not suite_summary . get ( "name" ) : suite_summary [ "name" ] = "testcase {}" . format ( index ) for record in suite_summary . get ( "records" ) : meta_datas = record [ 'meta_datas' ] __stringify_meta_datas ( meta_data...
def convert ( self ) : """Convert file ( s ) from ` ` mwTab ` ` format to ` ` JSON ` ` format or from ` ` JSON ` ` format to ` ` mwTab ` ` format . : return : None : rtype : : py : obj : ` None `"""
if not os . path . exists ( os . path . dirname ( self . file_generator . to_path ) ) : dirname = os . path . dirname ( self . file_generator . to_path ) if dirname : os . makedirs ( dirname ) if os . path . isdir ( self . file_generator . from_path ) : self . _many_to_many ( ) elif os . path . isfi...
def choice ( self , other ) : '''( | ) This combinator implements choice . The parser p | q first applies p . If it succeeds , the value of p is returned . If p fails * * without consuming any input * * , parser q is tried . NOTICE : without backtrack .'''
@ Parser def choice_parser ( text , index ) : res = self ( text , index ) return res if res . status or res . index != index else other ( text , index ) return choice_parser
def of_operator ( context , x , y ) : """' of ' operator of permission if This operator is used to specify the target object of permission"""
return x . eval ( context ) , y . eval ( context )
def _cull_redundant_about ( obj ) : """Removes the @ about key from the ` obj ` dict if that value refers to the dict ' s ' @ id '"""
about_val = obj . get ( '@about' ) if about_val : id_val = obj . get ( '@id' ) if id_val and ( ( '#' + id_val ) == about_val ) : del obj [ '@about' ]
def _complete_transaction ( cleanup_only , recursive , max_attempts , run_count , cmd_ret_list ) : '''. . versionadded : : Fluorine Called from ` ` complete _ transaction ` ` to protect the arguments used for tail recursion , ` ` run _ count ` ` and ` ` cmd _ ret _ list ` ` .'''
cmd = [ 'yum-complete-transaction' ] if cleanup_only : cmd . append ( '--cleanup-only' ) cmd_ret_list . append ( __salt__ [ 'cmd.run_all' ] ( cmd , output_loglevel = 'trace' , python_shell = False ) ) if ( cmd_ret_list [ - 1 ] [ 'retcode' ] == salt . defaults . exitcodes . EX_OK and recursive and 'No unfinished tra...
def get_all ( kind = '2' ) : '''Get All the records .'''
return TabPost . select ( ) . where ( ( TabPost . kind == kind ) & ( TabPost . valid == 1 ) ) . order_by ( TabPost . time_update . desc ( ) )
def _get_registerd_func ( name_or_func ) : """get a xcorr function from a str or callable ."""
# get the function or register callable if callable ( name_or_func ) : func = register_array_xcorr ( name_or_func ) else : func = XCOR_FUNCS [ name_or_func or 'default' ] assert callable ( func ) , 'func is not callable' # ensure func has the added methods if not hasattr ( func , 'registered' ) : func = reg...
def _extract_programming_immediate_instructions_text ( self , element_id ) : """Extract assignment text ( instructions ) . @ param element _ id : Element id to extract assignment instructions from . @ type element _ id : str @ return : List of assignment text ( instructions ) . @ rtype : [ str ]"""
dom = get_page ( self . _session , OPENCOURSE_PROGRAMMING_IMMEDIATE_INSTRUCTIOINS_URL , json = True , course_id = self . _course_id , element_id = element_id ) return [ element [ 'assignmentInstructions' ] [ 'definition' ] [ 'value' ] for element in dom [ 'elements' ] ]
def _inclusiveNamespacePrefixes ( node , context , unsuppressedPrefixes ) : '''http : / / www . w3 . org / TR / xml - exc - c14n / InclusiveNamespaces PrefixList parameter , which lists namespace prefixes that are handled in the manner described by the Canonical XML Recommendation'''
inclusive = [ ] if node . prefix : usedPrefixes = [ 'xmlns:%s' % node . prefix ] else : usedPrefixes = [ 'xmlns' ] for a in _attrs ( node ) : if a . nodeName . startswith ( 'xmlns' ) or not a . prefix : continue usedPrefixes . append ( 'xmlns:%s' % a . prefix ) unused_namespace_dict = { } for at...
def load_profile ( ctx , variant_file , update , stats , profile_threshold ) : """Command for profiling of samples . User may upload variants used in profiling from a vcf , update the profiles for all samples , and get some stats from the profiles in the database . Profiling is used to monitor duplicates in t...
adapter = ctx . obj [ 'adapter' ] if variant_file : load_profile_variants ( adapter , variant_file ) if update : update_profiles ( adapter ) if stats : distance_dict = profile_stats ( adapter , threshold = profile_threshold ) click . echo ( table_from_dict ( distance_dict ) )
def serve_once ( self ) : """Listen and handle 1 request ."""
# 256 is the maximum size of a Modbus RTU frame . request_adu = self . serial_port . read ( 256 ) log . debug ( '<-- {0}' . format ( hexlify ( request_adu ) ) ) if len ( request_adu ) == 0 : raise ValueError response_adu = self . process ( request_adu ) self . respond ( response_adu )
def p_expr_GT_expr ( p ) : """expr : expr GT expr"""
p [ 0 ] = make_binary ( p . lineno ( 2 ) , 'GT' , p [ 1 ] , p [ 3 ] , lambda x , y : x > y )
def _set_type ( self , v , load = False ) : """Setter method for type , mapped from YANG variable / overlay / access _ list / type ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ type is considered as a private method . Backends looking to populate this ...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = type . type , is_container = 'container' , presence = False , yang_name = "type" , rest_name = "type" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , register_paths = True , extensions ...
def sort_dict ( unsorted_dict ) : """Return a OrderedDict ordered by key names from the : unsorted _ dict :"""
sorted_dict = OrderedDict ( ) # sort items before inserting them into a dict for key , value in sorted ( unsorted_dict . items ( ) , key = itemgetter ( 0 ) ) : sorted_dict [ key ] = value return sorted_dict
def nmb_neurons ( self ) -> Tuple [ int , ... ] : """Number of neurons of the hidden layers . > > > from hydpy import ANN > > > ann = ANN ( None ) > > > ann ( nmb _ inputs = 2 , nmb _ neurons = ( 2 , 1 ) , nmb _ outputs = 3) > > > ann . nmb _ neurons (2 , 1) > > > ann . nmb _ neurons = ( 3 , ) > > > a...
return tuple ( numpy . asarray ( self . _cann . nmb_neurons ) )
def process_result_value ( self , value , dialect ) : """convert value from json to a python object"""
if value is not None : value = simplejson . loads ( value ) return value
def find_longest_increasing_subsequence ( sequence ) : """This function calculates the length of the longest monotonically increasing subsequence in the input list . Args : sequence : A list of numeric values . Returns : An integer value that represents the length of the longest monotonically increasing sub...
sequence_len = len ( sequence ) subsequence_lengths = [ 1 ] * sequence_len for idx1 in range ( 1 , sequence_len ) : for idx2 in range ( 0 , idx1 ) : if sequence [ idx1 ] > sequence [ idx2 ] and subsequence_lengths [ idx1 ] < subsequence_lengths [ idx2 ] + 1 : subsequence_lengths [ idx1 ] = subse...
def reciprocal_rank ( truth , recommend ) : """Reciprocal Rank ( RR ) . Args : truth ( numpy 1d array ) : Set of truth samples . recommend ( numpy 1d array ) : Ordered set of recommended samples . Returns : float : RR ."""
for n in range ( recommend . size ) : if recommend [ n ] in truth : return 1. / ( n + 1 ) return 0.
def prox_max_entropy ( X , step , gamma = 1 ) : """Proximal operator for maximum entropy regularization . g ( x ) = gamma \ sum _ i x _ i ln ( x _ i ) has the analytical solution of gamma W ( 1 / gamma exp ( ( X - gamma ) / gamma ) ) , where W is the Lambert W function ."""
from scipy . special import lambertw gamma_ = _step_gamma ( step , gamma ) # minimize entropy : return gamma _ * np . real ( lambertw ( np . exp ( ( X - gamma _ ) / gamma _ ) / gamma _ ) ) above = X > 0 X [ above ] = gamma_ * np . real ( lambertw ( np . exp ( X [ above ] / gamma_ - 1 ) / gamma_ ) ) return X
def pixdump ( source , start = None , end = None , length = None , width = 64 , height = None , palette = None ) : """Print the contents of a byte string as a 256 colour image . source The byte string to print . start Start offset to read from ( default : start ) end End offset to stop reading at ( defa...
for line in pixdump_iter ( source , start , end , length , width , height , palette ) : print ( line )
def sendto ( self , transport , addr ) : """Send request to a given address via given transport . Args : transport ( asyncio . DatagramTransport ) : Write transport to send the message on . addr ( Tuple [ str , int ] ) : IP address and port pair to send the message to ."""
msg = bytes ( self ) + b'\r\n' logger . debug ( "%s:%s < %s" , * ( addr + ( self , ) ) ) transport . sendto ( msg , addr )
async def parseResults ( self , api_data ) : """See CoverSource . parseResults ."""
results = [ ] # parse page parser = lxml . etree . HTMLParser ( ) html = lxml . etree . XML ( api_data . decode ( "utf-8" ) , parser ) for page_struct_version , result_selector in enumerate ( __class__ . RESULTS_SELECTORS ) : result_nodes = result_selector ( html ) if result_nodes : break for rank , res...
def obfuscate_builtins ( module , tokens , name_generator , table = None ) : """Inserts an assignment , ' < obfuscated identifier > = < builtin function > ' at the beginning of * tokens * ( after the shebang and encoding if present ) for every Python built - in function that is used inside * tokens * . Also , r...
used_builtins = analyze . enumerate_builtins ( tokens ) obfuscated_assignments = remap_name ( name_generator , used_builtins , table ) replacements = [ ] for assignment in obfuscated_assignments . split ( '\n' ) : replacements . append ( assignment . split ( '=' ) [ 0 ] ) replacement_dict = dict ( zip ( used_builti...
def _handle_tag_definetext2 ( self ) : """Handle the DefineText2 tag ."""
obj = _make_object ( "DefineText2" ) self . _generic_definetext_parser ( obj , self . _get_struct_rgba ) return obj
def calculate_report_size ( self , current_type , report_header ) : """Determine the size of a report given its type and header"""
fmt = self . known_formats [ current_type ] return fmt . ReportLength ( report_header )
def register ( self , * args , ** kwargs ) : '''调用方可根据主键字段进行爬虫的创建或更新操作 : return : 返回符合接口定义的字典数据 : rtype : dict'''
return { 'name' : zhihu . name , 'display_name' : zhihu . display_name , 'author' : zhihu . author , 'email' : zhihu . email , 'description' : zhihu . description , 'meta' : { # 爬取计划 , 参考 crontab 配置方法 'crawl_schedule' : '0 23 * * *' , # 执行爬取的随机延时 , 单位秒 , 用于避免被 Ban 'crawl_random_delay' : str ( 60 * 60 ) , 'package_modul...
def tables ( self ) : """Return the list of table names in the database"""
tables = [ ] self . cursor . execute ( "SELECT name FROM sqlite_master WHERE type='table'" ) for table_info in self . cursor . fetchall ( ) : if table_info [ 0 ] != 'sqlite_sequence' : tables . append ( table_info [ 0 ] ) return tables
def check_path_matches_patterns ( path , patterns ) : '''Check if the path matches at least one of the provided patterns .'''
path = os . path . abspath ( path ) for patt in patterns : if isinstance ( patt , six . string_types ) : if path == patt : return True elif patt . search ( path ) : return True return False
def textrank ( self , sentence , topK = 20 , withWeight = False , allowPOS = ( 'ns' , 'n' , 'vn' , 'v' ) , withFlag = False ) : """Extract keywords from sentence using TextRank algorithm . Parameter : - topK : return how many top keywords . ` None ` for all possible words . - withWeight : if True , return a l...
self . pos_filt = frozenset ( allowPOS ) g = UndirectWeightedGraph ( ) cm = defaultdict ( int ) words = tuple ( self . tokenizer . cut ( sentence ) ) for i , wp in enumerate ( words ) : if self . pairfilter ( wp ) : for j in xrange ( i + 1 , i + self . span ) : if j >= len ( words ) : ...
def isograph ( self , min_weight = None ) : '''Remove short - circuit edges using the Isograph algorithm . min _ weight : float , optional Minimum weight of edges to consider removing . Defaults to max ( MST ) . From " Isograph : Neighbourhood Graph Construction Based On Geodesic Distance For Semi - Supervi...
W = self . matrix ( 'dense' ) # get candidate edges : all edges - MST edges tree = self . minimum_spanning_subtree ( ) candidates = np . argwhere ( ( W - tree . matrix ( 'dense' ) ) > 0 ) cand_weights = W [ candidates [ : , 0 ] , candidates [ : , 1 ] ] # order by increasing edge weight order = np . argsort ( cand_weigh...
def get_range ( self , start = None , stop = None ) : """Return a RangeMap for the range start to stop . Returns : A RangeMap"""
return self . from_iterable ( self . ranges ( start , stop ) )
def terminate ( self ) : """Terminate the Service execution . . . versionadded : : 1.13 : return : None if the termination request was successful : raises APIError : When the service execution could not be terminated ."""
url = self . _client . _build_url ( 'service_execution_terminate' , service_execution_id = self . id ) response = self . _client . _request ( 'GET' , url , params = dict ( format = 'json' ) ) if response . status_code != requests . codes . accepted : # pragma : no cover raise APIError ( "Could not execute service '...
def fit ( self , X , y , cost_mat , check_input = False ) : """Build a example - dependent cost - sensitive decision tree from the training set ( X , y , cost _ mat ) Parameters y _ true : array indicator matrix Ground truth ( correct ) labels . X : array - like of shape = [ n _ samples , n _ features ] T...
# TODO : Check input # TODO : Add random state n_samples , self . n_features_ = X . shape self . tree_ = self . _tree_class ( ) # Maximum number of features to be taken into account per split if isinstance ( self . max_features , six . string_types ) : if self . max_features == "auto" : max_features = max (...
def datasource_process ( self , datasource_id ) : """deprecated Запускает настроенные обработки в фиде : param datasource _ id : uuid"""
# TODO Выпилить потом класс используется для другого # TODO без applicationId не выбираются поля сущностей . Подумать на сколько это НЕ нормально response = self . __app . native_api_call ( 'feed' , 'datasource/' + datasource_id + '/process?applicationId=1' , { } , self . __options , False , None , False , http_method...