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def show_firmware_version_output_show_firmware_version_switchid ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) show_firmware_version = ET . Element ( "show_firmware_version" ) config = show_firmware_version output = ET . SubElement ( show_firmware_version , "output" ) show_firmware_version = ET . SubElement ( output , "show-firmware-version" ) switchid = ET . SubElement ( show_firmware_version...
def reorient_wf ( name = 'ReorientWorkflow' ) : """A workflow to reorient images to ' RPI ' orientation"""
workflow = pe . Workflow ( name = name ) inputnode = pe . Node ( niu . IdentityInterface ( fields = [ 'in_file' ] ) , name = 'inputnode' ) outputnode = pe . Node ( niu . IdentityInterface ( fields = [ 'out_file' ] ) , name = 'outputnode' ) deoblique = pe . Node ( afni . Refit ( deoblique = True ) , name = 'deoblique' )...
async def stepper_config ( self , steps_per_revolution , stepper_pins ) : """Configure stepper motor prior to operation . This is a FirmataPlus feature . : param steps _ per _ revolution : number of steps per motor revolution : param stepper _ pins : a list of control pin numbers - either 4 or 2 : returns :...
data = [ PrivateConstants . STEPPER_CONFIGURE , steps_per_revolution & 0x7f , ( steps_per_revolution >> 7 ) & 0x7f ] for pin in range ( len ( stepper_pins ) ) : data . append ( stepper_pins [ pin ] ) await self . _send_sysex ( PrivateConstants . STEPPER_DATA , data )
def set_value ( self , value ) : """Set value of the checkbox . Parameters value : bool value for the checkbox"""
if value : self . setCheckState ( Qt . Checked ) else : self . setCheckState ( Qt . Unchecked )
def parse_cookies_str ( cookies ) : """parse cookies str to dict : param cookies : cookies str : type cookies : str : return : cookie dict : rtype : dict"""
cookie_dict = { } for record in cookies . split ( ";" ) : key , value = record . strip ( ) . split ( "=" , 1 ) cookie_dict [ key ] = value return cookie_dict
def one ( self ) : """Shows one row of the dataframe and the field names wiht count : return : a pandas dataframe : rtype : pd . DataFrame : example : ` ` ds . one ( ) ` `"""
try : return self . show ( 1 ) except Exception as e : self . err ( e , self . one , "Can not display dataframe" )
def parse_single_ad ( ad , global_names , common_words , args = { } ) : """An example extraction of a Backpage ad , with the following parameters : ad - > A dict representing an ad that is scraped as such : ad = items . BackpageScrapeItem ( backpage _ id = response . url . split ( ' . ' ) [ 0 ] . split ( ' / ...
multiple_phones = False if 'multiple_phones' not in args else args [ 'multiple_phones' ] item = { } # Backpage category # # 1 - - > FemaleEscorts # # 2 - - > BodyRubs # # 3 - - > Dating section ( after 1/9/17 Backpage shutdown of FemaleEscorts and BodyRubs ) # # 4 - - > TherapeuticMassage section ( 1/23/17 partial begi...
def clear ( self ) : """Removes all pending Jobs from the queue and return them in a list . This method does * * no * * t call # Job . cancel ( ) on any of the jobs . If you want that , use # cancel _ all ( ) or call it manually ."""
with synchronized ( self . __queue ) : jobs = self . __queue . snapshot ( ) self . __queue . clear ( ) return jobs
def del_bridge_port ( name , port ) : '''Delete a port from the named openvswitch bridge'''
log ( 'Deleting port {} from bridge {}' . format ( port , name ) ) subprocess . check_call ( [ "ovs-vsctl" , "--" , "--if-exists" , "del-port" , name , port ] ) subprocess . check_call ( [ "ip" , "link" , "set" , port , "down" ] ) subprocess . check_call ( [ "ip" , "link" , "set" , port , "promisc" , "off" ] )
def _add_assertion_provenance ( self , assoc_id , evidence_line_bnode ) : """Add assertion level provenance , currently always IMPC : param assoc _ id : : param evidence _ line _ bnode : : return :"""
provenance_model = Provenance ( self . graph ) model = Model ( self . graph ) assertion_bnode = self . make_id ( "assertion{0}{1}" . format ( assoc_id , self . localtt [ 'IMPC' ] ) , '_' ) model . addIndividualToGraph ( assertion_bnode , None , self . globaltt [ 'assertion' ] ) provenance_model . add_assertion ( assert...
def geom2localortho ( geom ) : """Convert existing geom to local orthographic projection Useful for local cartesian distance / area calculations"""
cx , cy = geom . Centroid ( ) . GetPoint_2D ( ) lon , lat , z = cT_helper ( cx , cy , 0 , geom . GetSpatialReference ( ) , wgs_srs ) local_srs = localortho ( lon , lat ) local_geom = geom_dup ( geom ) geom_transform ( local_geom , local_srs ) return local_geom
def update ( gandi , ip , reverse , background ) : """Update an ip ."""
if not reverse : return return gandi . ip . update ( ip , { 'reverse' : reverse } , background )
def sql ( self , stmt , parameters = None , bulk_parameters = None ) : """Execute SQL stmt against the crate server ."""
if stmt is None : return None data = _create_sql_payload ( stmt , parameters , bulk_parameters ) logger . debug ( 'Sending request to %s with payload: %s' , self . path , data ) content = self . _json_request ( 'POST' , self . path , data = data ) logger . debug ( "JSON response for stmt(%s): %s" , stmt , content )...
def merge_wheres ( self , wheres , bindings ) : """Merge a list of where clauses and bindings : param wheres : A list of where clauses : type wheres : list : param bindings : A list of bindings : type bindings : list : rtype : None"""
self . wheres = self . wheres + wheres self . _bindings [ 'where' ] = self . _bindings [ 'where' ] + bindings
def closest_timezone_at ( self , * , lat , lng , delta_degree = 1 , exact_computation = False , return_distances = False , force_evaluation = False ) : """This function searches for the closest polygon in the surrounding shortcuts . Make sure that the point does not lie within a polygon ( for that case the algori...
def exact_routine ( polygon_nr ) : coords = self . coords_of ( polygon_nr ) nr_points = len ( coords [ 0 ] ) empty_array = empty ( [ 2 , nr_points ] , dtype = DTYPE_FORMAT_F_NUMPY ) return distance_to_polygon_exact ( lng , lat , nr_points , coords , empty_array ) def normal_routine ( polygon_nr ) : ...
def get_alias_table ( ) : """Get the current alias table ."""
try : alias_table = get_config_parser ( ) alias_table . read ( azext_alias . alias . GLOBAL_ALIAS_PATH ) return alias_table except Exception : # pylint : disable = broad - except return get_config_parser ( )
def unbuffered_write ( self , buf ) : """Performs an unbuffered write , the default unless socket . send does not send everything , in which case an unbuffered write is done and the write method is set to be a buffered write until the buffer is empty once again . buf - - bytes to send"""
if self . closed : raise ConnectionClosed ( ) result = 0 try : result = self . sock . send ( buf ) except EnvironmentError as e : # if the socket is simply backed up ignore the error if e . errno != errno . EAGAIN : self . _close ( e ) return # when the socket buffers are full / backed up th...
def serialize_to_dict ( dictionary ) : '''Make a json - serializable dictionary from input dictionary by converting non - serializable data types such as numpy arrays .'''
retval = { } for k , v in dictionary . items ( ) : if isinstance ( v , dict ) : retval [ k ] = serialize_to_dict ( v ) else : # This is when custom serialization happens if isinstance ( v , np . ndarray ) : if v . dtype == 'float64' : # We don ' t support float64 on js side ...
def predict ( self , peptides , alleles = None , allele = None , throw = True , centrality_measure = DEFAULT_CENTRALITY_MEASURE ) : """Predict nM binding affinities . If multiple predictors are available for an allele , the predictions are the geometric means of the individual model predictions . One of ' all...
df = self . predict_to_dataframe ( peptides = peptides , alleles = alleles , allele = allele , throw = throw , include_percentile_ranks = False , include_confidence_intervals = False , centrality_measure = centrality_measure , ) return df . prediction . values
def acknowledge_alarm ( self , alarm , comment = None ) : """Acknowledges a specific alarm associated with a parameter . : param alarm : Alarm instance : type alarm : : class : ` . Alarm ` : param str comment : Optional comment to associate with the state change ."""
url = '/processors/{}/{}/parameters{}/alarms/{}' . format ( self . _instance , self . _processor , alarm . name , alarm . sequence_number ) req = rest_pb2 . EditAlarmRequest ( ) req . state = 'acknowledged' if comment is not None : req . comment = comment self . _client . put_proto ( url , data = req . SerializeToS...
def bed_writer ( parser , keep , extract , args ) : """Writes BED / BIM / FAM files ."""
# The output bed and bim file bim_fn = args . output + ".bim" with open ( bim_fn , "w" ) as bim , PyPlink ( args . output , "w" ) as bed : # Getting the samples samples = np . array ( parser . get_samples ( ) , dtype = str ) k = _get_sample_select ( samples = samples , keep = keep ) # Writing the FAM file ...
def processNickList ( nicks , platforms = None , rutaDescarga = "./" , avoidProcessing = True , avoidDownload = True , nThreads = 12 , verbosity = 1 , logFolder = "./logs" ) : """Process a list of nicks to check whether they exist . This method receives as a parameter a series of nicks and verifies whether thos...
if platforms == None : platforms = platform_selection . getAllPlatformNames ( "usufy" ) # Defining the output results variable res = [ ] # Processing the whole list of terms . . . for nick in nicks : # If the process is executed by the current app , we use the Processes . It is faster than pools . if nThreads <...
def send ( self , message ) : """Send message to device ."""
serialized = message . SerializeToString ( ) log_binary ( _LOGGER , '>> Send' , Data = serialized ) if self . _chacha : serialized = self . _chacha . encrypt ( serialized ) log_binary ( _LOGGER , '>> Send' , Encrypted = serialized ) data = write_variant ( len ( serialized ) ) + serialized self . _transport . wr...
def valid_web_plugin ( self , plugin ) : """Validate a web plugin , ensuring it is a web plugin and has the necessary fields present . ` plugin ` is a subclass of scruffy ' s Plugin class ."""
if ( issubclass ( plugin , WebPlugin ) and hasattr ( plugin , 'plugin_type' ) and plugin . plugin_type == 'web' and hasattr ( plugin , 'name' ) and plugin . name != None ) : return True return False
def list ( self , session = None ) : """List the names of all files stored in this instance of : class : ` GridFS ` . : Parameters : - ` session ` ( optional ) : a : class : ` ~ pymongo . client _ session . ClientSession ` . . versionchanged : : 3.6 Added ` ` session ` ` parameter . . . versionchanged...
# With an index , distinct includes documents with no filename # as None . return [ name for name in self . __files . distinct ( "filename" , session = session ) if name is not None ]
def get_kx ( N , dx ) : """GET _ KX : summary : Returns the frequencies to be used with FFT analysis : parameter N : number of samples in data : parameter dx : sampling step : return : Returns * k : frequency * L : length * imx : index of maximum frequency ( for separating positive and negative freque...
# to work with dimensional axes L = N * dx # Odd or even odd = N & 1 and True or False # Get frequency & wavenumber k = ft . fftfreq ( N , d = dx ) # k = f * N imx = ( N - 1 ) / 2 if odd else N / 2 # Maximum frequency # Convert into frequencies # k / = L return k , L , imx
def get_instance ( self , payload ) : """Build an instance of DependentHostedNumberOrderInstance : param dict payload : Payload response from the API : returns : twilio . rest . preview . hosted _ numbers . authorization _ document . dependent _ hosted _ number _ order . DependentHostedNumberOrderInstance : r...
return DependentHostedNumberOrderInstance ( self . _version , payload , signing_document_sid = self . _solution [ 'signing_document_sid' ] , )
def _dims_in_order ( self , dimension_order ) : ''': param list dimension _ order : A list of axes : rtype : bool : return : Returns True if the dimensions are in order U * , T , Z , Y , X , False otherwise'''
regx = regex . compile ( r'^[^TZYX]*T?Z?Y?X?$' ) dimension_string = '' . join ( dimension_order ) return regx . match ( dimension_string ) is not None
def build_logger_tree ( ) : """Build a DFS tree representing the logger layout . Adapted with much appreciation from : https : / / github . com / brandon - rhodes / logging _ tree"""
cache = { } tree = make_logger_node ( "" , root ) for name , logger in sorted ( root . manager . loggerDict . items ( ) ) : if "." in name : parent_name = "." . join ( name . split ( "." ) [ : - 1 ] ) parent = cache [ parent_name ] else : parent = tree cache [ name ] = make_logger_no...
def _enqueue_function ( self ) : """Internal method used by AddEventHandler . Provides functionality of enqueue / dequeue of the events and triggering callbacks ."""
from UcsBase import _GenericMO , UcsUtils , WriteObject myThread = self . _enqueueThread self . _enqueueThreadSignal . acquire ( ) try : xmlQuery = '<eventSubscribe cookie="' + self . _cookie + '"/>' uri = self . Uri ( ) + '/nuova' req = urllib2 . Request ( url = uri , data = xmlQuery ) self . _watchWeb...
def manage_actor ( self , monitor , actor , stop = False ) : '''If an actor failed to notify itself to the arbiter for more than the timeout , stop the actor . : param actor : the : class : ` Actor ` to manage . : param stop : if ` ` True ` ` , stop the actor . : return : if the actor is alive 0 if it is no...
if not monitor . is_running ( ) : stop = True if not actor . is_alive ( ) : if not actor . should_be_alive ( ) and not stop : return 1 actor . join ( ) self . _remove_monitored_actor ( monitor , actor ) return 0 timeout = None started_stopping = bool ( actor . stopping_start ) # if started _...
def configure_uploadfor ( self , ns , definition ) : """Register an upload - for relation endpoint . The definition ' s func should be an upload function , which must : - accept kwargs for path data and query string parameters - accept a list of tuples of the form ( formname , tempfilepath , filename ) - op...
upload_for = self . create_upload_func ( ns , definition , ns . relation_path , Operation . UploadFor ) upload_for . __doc__ = "Upload a {} for a {}" . format ( ns . subject_name , ns . object_name )
def get_template ( filename_or_string , is_string = False ) : '''Gets a jinja2 ` ` Template ` ` object for the input filename or string , with caching based on the filename of the template , or the SHA1 of the input string .'''
# Cache against string sha or just the filename cache_key = sha1_hash ( filename_or_string ) if is_string else filename_or_string if cache_key in TEMPLATES : return TEMPLATES [ cache_key ] if is_string : # Set the input string as our template template_string = filename_or_string else : # Load template data into...
def _num_players ( self ) : """Compute number of players , both human and computer ."""
self . _player_num = 0 self . _computer_num = 0 for player in self . _header . scenario . game_settings . player_info : if player . type == 'human' : self . _player_num += 1 elif player . type == 'computer' : self . _computer_num += 1
def add_field ( self , name , script , lang = None , params = None , ignore_failure = False ) : """Add a field to script _ fields"""
data = { } if lang : data [ "lang" ] = lang if script : data [ 'script' ] = script else : raise ScriptFieldsError ( "Script is required for script_fields definition" ) if params : if isinstance ( params , dict ) : if len ( params ) : data [ 'params' ] = params else : rais...
def wrap ( self , LayoutClass , * args , ** kwargs ) : """Wraps every layout object pointed in ` self . slice ` under a ` LayoutClass ` instance with ` args ` and ` kwargs ` passed ."""
def wrap_object ( layout_object , j ) : layout_object . fields [ j ] = self . wrapped_object ( LayoutClass , layout_object . fields [ j ] , * args , ** kwargs ) self . pre_map ( wrap_object )
def exists ( self ) : """Retrieves whether the document exists in the remote database or not . : returns : True if the document exists in the remote database , otherwise False"""
if '_id' not in self or self [ '_id' ] is None : return False resp = self . r_session . head ( self . document_url ) if resp . status_code not in [ 200 , 404 ] : resp . raise_for_status ( ) return resp . status_code == 200
def incompatibilities_for ( self , package ) : # type : ( DependencyPackage ) - > List [ Incompatibility ] """Returns incompatibilities that encapsulate a given package ' s dependencies , or that it can ' t be safely selected . If multiple subsequent versions of this package have the same dependencies , this ...
if package . is_root ( ) : dependencies = package . all_requires else : dependencies = package . requires if not package . python_constraint . allows_all ( self . _package . python_constraint ) : intersection = package . python_constraint . intersect ( package . dependency . transitive_python_constr...
def add_property ( self , property_name , use_context = True ) : """Add simple property to schema : param property _ name : str , property name : param use _ context : bool , whether custom context should be used : return : shiftschema . property . SimpleProperty"""
if self . has_property ( property_name ) : err = 'Property "{}" already exists' raise PropertyExists ( err . format ( property_name ) ) prop = SimpleProperty ( use_context = bool ( use_context ) ) self . properties [ property_name ] = prop return prop
def update ( self , data ) : """Updates the object information based on live data , if there were any changes made . Any changes will be automatically applied to the object , but will not be automatically persisted . You must manually call ` db . session . add ( instance ) ` on the object . Args : data ( : ...
updated = False if 'missing_tags' in data : updated |= self . set_property ( 'missing_tags' , data [ 'missing_tags' ] ) if 'notes' in data : updated |= self . set_property ( 'notes' , data [ 'notes' ] ) if 'state' in data : updated |= self . set_property ( 'state' , data [ 'state' ] ) if 'last_alert' in dat...
async def add ( self , device , recursive = None ) : """Mount or unlock the device depending on its type . : param device : device object , block device path or mount path : param bool recursive : recursively mount and unlock child devices : returns : whether all attempted operations succeeded"""
device , created = await self . _find_device_losetup ( device ) if created and recursive is False : return device if device . is_filesystem : success = await self . mount ( device ) elif device . is_crypto : success = await self . unlock ( device ) if success and recursive : await self . udisks ...
def get_list_url ( self , kind_slug = None ) : """Get the list URL for this Work . You can also pass a kind _ slug in ( e . g . ' movies ' ) and it will use that instead of the Work ' s kind _ slug . ( Why ? Useful in views . Or tests of views , at least . )"""
if kind_slug is None : kind_slug = self . KIND_SLUGS [ self . kind ] return reverse ( 'spectator:events:work_list' , kwargs = { 'kind_slug' : kind_slug } )
def _findRedundantProteins ( protToPeps , pepToProts , proteins = None ) : """Returns a set of proteins with redundant peptide evidence . After removing the redundant proteins from the " protToPeps " and " pepToProts " mapping , all remaining proteins have at least one unique peptide . The remaining proteins ...
if proteins is None : proteins = viewkeys ( protToPeps ) pepFrequency = _getValueCounts ( pepToProts ) protPepCounts = _getValueCounts ( protToPeps ) getCount = operator . itemgetter ( 1 ) getProt = operator . itemgetter ( 0 ) # TODO : quick and dirty solution # NOTE : add a test for merged proteins proteinTuples =...
def main ( args = None ) : """Start application ."""
dlx = Downloader ( ) epilog = dlx . epilog ( ) options , arguments = parse ( args , epilog ) # create list of video files that don ' t have accompanying ' srt ' subtitles targets = [ p for p in arguments if os . path . isfile ( p ) and not os . path . exists ( os . path . splitext ( p ) [ 0 ] + '.srt' ) ] if not target...
def create ( cls , location = None , storage_class = None , ** kwargs ) : r"""Create a bucket . : param location : Location of a bucket ( instance or name ) . Default : Default location . : param storage _ class : Storage class of a bucket . Default : Default storage class . : param \ * * kwargs : Keyword...
with db . session . begin_nested ( ) : if location is None : location = Location . get_default ( ) elif isinstance ( location , six . string_types ) : location = Location . get_by_name ( location ) obj = cls ( default_location = location . id , default_storage_class = storage_class or curren...
def GetList ( self ) : """Get Info on Current List This is run in _ _ init _ _ so you don ' t have to run it again . Access from self . schema"""
# Build Request soap_request = soap ( 'GetList' ) soap_request . add_parameter ( 'listName' , self . listName ) self . last_request = str ( soap_request ) # Send Request response = self . _session . post ( url = self . _url ( 'Lists' ) , headers = self . _headers ( 'GetList' ) , data = str ( soap_request ) , verify = s...
def conforms ( cntxt : Context , n : Node , S : ShExJ . Shape ) -> bool : """` 5.6.1 Schema Validation Requirement < http : / / shex . io / shex - semantics / # validation - requirement > ` _ A graph G is said to conform with a schema S with a ShapeMap m when : Every , SemAct in the startActs of S has a success...
# return semActsSatisfied ( cntxt . schema . startActs , cntxt ) and \ # all ( reference _ of ( cntxt . schema , sa . shapeLabel ) is not None and return True
def incidental ( self ) : """Returns incidental properties ."""
result = [ p for p in self . lazy_properties if p . feature . incidental ] result . extend ( self . incidental_ ) return result
def merge ( cls , tables , fillna = False ) : """Merge a list of tables"""
cols = set ( itertools . chain ( * [ table . dtype . descr for table in tables ] ) ) tables_to_merge = [ ] for table in tables : missing_cols = cols - set ( table . dtype . descr ) if missing_cols : if fillna : n = len ( table ) n_cols = len ( missing_cols ) col_names...
def _get_filesystem_path ( self , url_path , basedir = settings . MEDIA_ROOT ) : """Makes a filesystem path from the specified URL path"""
if url_path . startswith ( settings . MEDIA_URL ) : url_path = url_path [ len ( settings . MEDIA_URL ) : ] # strip media root url return os . path . normpath ( os . path . join ( basedir , url2pathname ( url_path ) ) )
def _starting_consonants_only ( self , letters : list ) -> list : """Return a list of starting consonant positions ."""
for idx , letter in enumerate ( letters ) : if not self . _contains_vowels ( letter ) and self . _contains_consonants ( letter ) : return [ idx ] if self . _contains_vowels ( letter ) : return [ ] if self . _contains_vowels ( letter ) and self . _contains_consonants ( letter ) : retu...
def reset ( self ) : """Resets the value of config item to its default value ."""
old_value = self . _value old_raw_str_value = self . raw_str_value self . _value = not_set self . raw_str_value = not_set new_value = self . _value if old_value is not_set : # Nothing to report return if self . section : self . section . dispatch_event ( self . section . hooks . item_value_changed , item = self...
def load_toolbars ( self ) : """Loads the last visible toolbars from the . ini file ."""
toolbars_names = CONF . get ( 'main' , 'last_visible_toolbars' , default = [ ] ) if toolbars_names : dic = { } for toolbar in self . toolbars : dic [ toolbar . objectName ( ) ] = toolbar toolbar . toggleViewAction ( ) . setChecked ( False ) toolbar . setVisible ( False ) for name in ...
def add_rule_entry ( self , rule_info ) : """Add host data object to the rule _ info list ."""
new_rule = IpMacPort ( rule_info . get ( 'ip' ) , rule_info . get ( 'mac' ) , rule_info . get ( 'port' ) ) LOG . debug ( 'Added rule info %s to the list' , rule_info ) self . rule_info . append ( new_rule )
def visit_ellipsis ( self , node , parent ) : """visit an Ellipsis node by returning a fresh instance of it"""
return nodes . Ellipsis ( getattr ( node , "lineno" , None ) , getattr ( node , "col_offset" , None ) , parent )
def write ( self , version ) : # type : ( str ) - > None """Write the project version to . py file . This will regex search in the file for a ` ` _ _ version _ _ = VERSION _ STRING ` ` and substitute the version string for the new version ."""
with open ( self . version_file ) as fp : content = fp . read ( ) ver_statement = "__version__ = '{}'" . format ( version ) new_content = RE_PY_VERSION . sub ( ver_statement , content ) fs . write_file ( self . version_file , new_content )
def update_environment ( ApplicationName = None , EnvironmentId = None , EnvironmentName = None , GroupName = None , Description = None , Tier = None , VersionLabel = None , TemplateName = None , SolutionStackName = None , PlatformArn = None , OptionSettings = None , OptionsToRemove = None ) : """Updates the enviro...
pass
def connection_from_host ( self , host , port = 80 , scheme = 'http' ) : """Get a : class : ` ConnectionPool ` based on the host , port , and scheme . Note that an appropriate ` ` port ` ` value is required here to normalize connection pools in our container most effectively ."""
pool_key = ( scheme , host , port ) # If the scheme , host , or port doesn ' t match existing open connections , # open a new ConnectionPool . pool = self . pools . get ( pool_key ) if pool : return pool # Make a fresh ConnectionPool of the desired type pool_cls = pool_classes_by_scheme [ scheme ] pool = pool_cls (...
def ml_entropy ( lst ) : """General Machine Learning Formulas Intermezzo - computing Logarithms log2 ( x ) = y < = > 2 ^ y = x Definition of Entropy E = - SUM ( p [ i ] log2 ( p [ i ] ) i = 1 where k = possible values enumerated 1,2 , . . . , k p [ i ] = c [ i ] / n is the fraction of elements havin...
tot = sum ( lst ) res = 0 for v in lst : if v > 0 : p = v / tot l = math . log ( p , 2 ) res += round ( p * l , 6 ) res = round ( res * - 1 , 6 ) print ( 'lst = ' , lst , 'entropy = ' , res ) return res
def _set_attr ( self , name , doc = None , preload = False ) : "Initially sets up an attribute ."
if doc is None : doc = 'The {name} attribute.' . format ( name = name ) if not hasattr ( self . _attr_func_ , name ) : attr_prop = property ( functools . partial ( self . _setable_get_ , name ) , functools . partial ( self . _setable_set_ , name ) , doc = doc ) elif preload : func = getattr ( self . _attr_f...
def using_env ( self , env , clean = True , silent = True , filename = None ) : """This context manager allows the contextual use of a different env Example of settings . toml : : [ development ] message = ' This is in dev ' [ other ] message = ' this is in other env ' Program : : > > > from dynaconf ...
try : self . setenv ( env , clean = clean , silent = silent , filename = filename ) self . logger . debug ( "In env: %s" , env ) yield finally : if env . lower ( ) != self . ENV_FOR_DYNACONF . lower ( ) : del self . loaded_envs [ - 1 ] self . logger . debug ( "Out env: %s" , env ) self ....
def thread_function ( self ) : """Thread function ."""
self . __subscribed = True url = SUBSCRIBE_ENDPOINT + "?token=" + self . _session_token data = self . _session . query ( url , method = 'GET' , raw = True , stream = True ) if not data or not data . ok : _LOGGER . debug ( "Did not receive a valid response. Aborting.." ) return None self . __sseclient = sseclien...
def get_reply ( self , message ) : """根据 message 的内容获取 Reply 对象 。 : param message : 要处理的 message : return : 获取的 Reply 对象"""
session_storage = self . session_storage id = None session = None if session_storage and hasattr ( message , "source" ) : id = to_binary ( message . source ) session = session_storage [ id ] handlers = self . get_handlers ( message . type ) try : for handler , args_count in handlers : args = [ messa...
def load_rnn_checkpoint ( cells , prefix , epoch ) : """Load model checkpoint from file . Pack weights after loading . Parameters cells : mxnet . rnn . RNNCell or list of RNNCells The RNN cells used by this symbol . prefix : str Prefix of model name . epoch : int Epoch number of model we would like ...
sym , arg , aux = load_checkpoint ( prefix , epoch ) if isinstance ( cells , BaseRNNCell ) : cells = [ cells ] for cell in cells : arg = cell . pack_weights ( arg ) return sym , arg , aux
def write ( filename , samples , write_params = None , static_args = None , injtype = None , ** metadata ) : """Writes the injection samples to the given hdf file . Parameters filename : str The name of the file to write to . samples : io . FieldArray FieldArray of parameters . write _ params : list , o...
# DELETE the following " if " once xml is dropped ext = os . path . basename ( filename ) if ext . endswith ( ( '.xml' , '.xml.gz' , '.xmlgz' ) ) : _XMLInjectionSet . write ( filename , samples , write_params , static_args ) else : # try determine the injtype if it isn ' t given if injtype is None : if ...
def handle_scrollwheel ( self , event ) : """Make endev from appkit scroll wheel event ."""
delta_x , delta_y , delta_z = self . _get_deltas ( event ) if delta_x : self . events . append ( self . emulate_wheel ( delta_x , 'x' , self . timeval ) ) if delta_y : self . events . append ( self . emulate_wheel ( delta_y , 'y' , self . timeval ) ) if delta_z : self . events . append ( self . emulate_whee...
def from_records ( cls , data , index = None , exclude = None , columns = None , coerce_float = False , nrows = None ) : """Convert structured or record ndarray to DataFrame . Parameters data : ndarray ( structured dtype ) , list of tuples , dict , or DataFrame index : string , list of fields , array - like ...
# Make a copy of the input columns so we can modify it if columns is not None : columns = ensure_index ( columns ) if is_iterator ( data ) : if nrows == 0 : return cls ( ) try : first_row = next ( data ) except StopIteration : return cls ( index = index , columns = columns ) ...
def fetch_task_failures ( self ) : """Read in the error file from bsub"""
error_file = os . path . join ( self . tmp_dir , "job.err" ) if os . path . isfile ( error_file ) : with open ( error_file , "r" ) as f_err : errors = f_err . readlines ( ) else : errors = '' return errors
def request ( input , representation , resolvers = None , get3d = False , tautomers = False , ** kwargs ) : """Make a request to CIR and return the XML response . : param string input : Chemical identifier to resolve : param string representation : Desired output representation : param list ( string ) resolve...
url = construct_api_url ( input , representation , resolvers , get3d , tautomers , ** kwargs ) log . debug ( 'Making request: %s' , url ) response = urlopen ( url ) return etree . parse ( response ) . getroot ( )
def _normalize_address_type ( self , addr ) : # pylint : disable = no - self - use """Convert address of different types to a list of mapping between region IDs and offsets ( strided intervals ) . : param claripy . ast . Base addr : Address to convert : return : A list of mapping between region IDs and offsets ...
addr_e = _raw_ast ( addr ) if isinstance ( addr_e , ( claripy . bv . BVV , claripy . vsa . StridedInterval , claripy . vsa . ValueSet ) ) : raise SimMemoryError ( '_normalize_address_type() does not take claripy models.' ) if isinstance ( addr_e , claripy . ast . Base ) : if not isinstance ( addr_e . _model_vsa...
def indent ( self ) : """Indents the document text under cursor . : return : Method success . : rtype : bool"""
cursor = self . textCursor ( ) if not cursor . hasSelection ( ) : cursor . insertText ( self . __indent_marker ) else : block = self . document ( ) . findBlock ( cursor . selectionStart ( ) ) while True : block_cursor = self . textCursor ( ) block_cursor . setPosition ( block . position ( ) ...
def pressure_tendency ( code : str , unit : str = 'mb' ) -> str : """Translates a 5 - digit pressure outlook code Ex : 50123 - > 12.3 mb : Increasing , then decreasing"""
width , precision = int ( code [ 2 : 4 ] ) , code [ 4 ] return ( '3-hour pressure difference: +/- ' f'{width}.{precision} {unit} - {PRESSURE_TENDENCIES[code[1]]}' )
def minimum_swaps ( binary_str1 : str , binary_str2 : str ) -> int : """Determine the minimum number of swaps required to transform one binary string into another . If the transformation isn ' t possible , return a message indicating this . Args : binary _ str1 : The first binary string . binary _ str2 : Th...
diff_count = 0 for i in range ( len ( binary_str1 ) ) : if binary_str1 [ i ] != binary_str2 [ i ] : diff_count += 1 if diff_count % 2 == 0 : return diff_count // 2 else : return 'Not Possible'
def parse ( self , spec = None , spec_params = None ) : """Parses the contents generically , or using a spec with optional params : param spec : A class derived from Asn1Value that defines what class _ and tag the value should have , and the semantics of the encoded value . The return value will be of this ...
if self . _parsed is None or self . _parsed [ 1 : 3 ] != ( spec , spec_params ) : parsed_value , _ = _parse_build ( self . __bytes__ ( ) , spec = spec , spec_params = spec_params ) self . _parsed = ( parsed_value , spec , spec_params ) return self . _parsed [ 0 ]
def active_url ( context , urls , css = None ) : """Highlight menu item based on url tag . Returns a css class if ` ` request . path ` ` is in given ` ` url ` ` . : param url : Django url to be reversed . : param css : Css class to be returned for highlighting . Return active if none set ."""
request = context [ 'request' ] if request . get_full_path in ( reverse ( url ) for url in urls . split ( ) ) : return css if css else 'active' return ''
def call_callbacks ( self , iid , type , args ) : """Call the available callbacks for a certain marker : param iid : marker identifier : type iid : str : param type : type of callback ( key in tag dictionary ) : type type : str : param args : arguments for the callback : type args : tuple : return : a...
amount = 0 for tag in self . marker_tags ( iid ) : callback = self . _tags [ tag ] . get ( type , None ) if callback is not None : amount += 1 callback ( * args ) return amount
def readline ( self , size = - 1 ) : '''This reads and returns one entire line . The newline at the end of line is returned as part of the string , unless the file ends without a newline . An empty string is returned if EOF is encountered immediately . This looks for a newline as a CR / LF pair ( \\ r \\ n ) ...
if size == 0 : return self . string_type ( ) # delimiter default is EOF index = self . expect ( [ self . crlf , self . delimiter ] ) if index == 0 : return self . before + self . crlf else : return self . before
def get_data ( self ) : """Find the data stored in the config _ map : return : dict , the json of the data data that was passed into the ConfigMap on creation"""
data = graceful_chain_get ( self . json , "data" ) if data is None : return { } data_dict = { } for key in data : if self . is_yaml ( key ) : data_dict [ key ] = yaml . load ( data [ key ] ) else : data_dict [ key ] = json . loads ( data [ key ] ) return data_dict
def parse_timestamp ( timestamp ) : """Parse ISO8601 timestamps given by github API ."""
dt = dateutil . parser . parse ( timestamp ) return dt . astimezone ( dateutil . tz . tzutc ( ) )
def curry ( f , args_supplied = ( ) ) : """Takes a function , and then returns a function that takes each argument for the original function through _ _ call _ _ . You probably shouldn ' t use this with builtins ! Even if it seems to work with a builtin , it might not work properly in previous versions of Pytho...
try : nargs_required = len ( signature ( f ) . parameters ) except ValueError as e : raise ValueError ( str ( e ) + " (maybe you're trying to curry a built-in?)" ) def inner ( arg ) : new_args_supplied = args_supplied + ( arg , ) if len ( new_args_supplied ) == nargs_required : return f ( * new_...
def getLogger ( name = None ) : '''return a logger instrumented with additional 1 - letter logging methods ;'''
logger = logging . getLogger ( name = name ) if not hasattr ( logger , 'd' ) : def d ( self , msg , * args , ** kwargs ) : return self . log ( DEBUG , msg , * args , ** kwargs ) logger . d = types . MethodType ( d , logger ) if not hasattr ( logger , 'v' ) : def v ( self , msg , * args , ** kwargs )...
def lbnd ( self ) : """the lower bound vector while respecting log transform Returns lbnd : pandas . Series"""
if not self . istransformed : return self . pst . parameter_data . parlbnd . copy ( ) else : lb = self . pst . parameter_data . parlbnd . copy ( ) lb [ self . log_indexer ] = np . log10 ( lb [ self . log_indexer ] ) return lb
def scratch_file ( unlink = True , ** kwargs ) : """Create a temporary file and return its name . Additional arguments are passed to : class : ` tempfile . NamedTemporaryFile ` At the start of the with block a secure , temporary file is created and its name returned . At the end of the with block it is dele...
kwargs [ 'delete' ] = False tf = tempfile . NamedTemporaryFile ( ** kwargs ) tf . close ( ) try : yield tf . name finally : if unlink : os . unlink ( tf . name )
def open ( self ) : """Open TCP socket with ` ` socket ` ` - library and set it as escpos device"""
self . device = socket . socket ( socket . AF_INET , socket . SOCK_STREAM ) self . device . settimeout ( self . timeout ) self . device . connect ( ( self . host , self . port ) ) if self . device is None : print ( "Could not open socket for {0}" . format ( self . host ) )
def format_account ( service_name , data ) : """Given profile data and the name of a social media service , format it for the zone file . @ serviceName : name of the service @ data : legacy profile verification Returns the formatted account on success , as a dict ."""
if "username" not in data : raise KeyError ( "Account is missing a username" ) account = { "@type" : "Account" , "service" : service_name , "identifier" : data [ "username" ] , "proofType" : "http" } if ( data . has_key ( service_name ) and data [ service_name ] . has_key ( "proof" ) and data [ service_name ] [ "pr...
def _add_to_ptr_size ( self , ptr ) : # type : ( path _ table _ record . PathTableRecord ) - > int '''An internal method to add a PTR to a VD , adding space to the VD if necessary . Parameters : ptr - The PTR to add to the vd . Returns : The number of additional bytes that are needed to fit the new PTR ...
num_bytes_to_add = 0 for pvd in self . pvds : # The add _ to _ ptr _ size ( ) method returns True if the PVD needs # additional space in the PTR to store this directory . We always # add 4 additional extents for that ( 2 for LE , 2 for BE ) . if pvd . add_to_ptr_size ( path_table_record . PathTableRecord . record_l...
def _get_hangul_syllable_name ( hangul_syllable ) : """Function for taking a Unicode scalar value representing a Hangul syllable and converting it to its syllable name as defined by the Unicode naming rule NR1 . See the Unicode Standard , ch . 04 , section 4.8 , Names , for more information . : param hangul _ s...
if not _is_hangul_syllable ( hangul_syllable ) : raise ValueError ( "Value passed in does not represent a Hangul syllable!" ) jamo = decompose_hangul_syllable ( hangul_syllable , fully_decompose = True ) result = '' for j in jamo : if j is not None : result += _get_jamo_short_name ( j ) return result
def count_stages ( self , matrix_name ) : """Number of registered stages for given matrix name . Parameters : matrix _ name ( str ) : name of the matrix Returns : int : number of reported stages for given matrix name ."""
return len ( self . data [ matrix_name ] ) if matrix_name in self . data else 0
def context ( self , line ) : """Return the context for a given 1 - offset line number ."""
# XXX due to a limitation in Visitor , # non - python code after the last python code # in a file is not added to self . lines , so we # have to guard against IndexErrors . idx = line - 1 if idx >= len ( self . lines ) : return self . prefix return self . lines [ idx ]
def split_limits_heads ( self ) : """Return first parts of dot - separated strings , and rest of strings . Returns : ( list of str , list of str ) : the heads and rest of the strings ."""
heads = [ ] new_limit_to = [ ] for limit in self . limit_to : if '.' in limit : name , limit = limit . split ( '.' , 1 ) heads . append ( name ) new_limit_to . append ( limit ) else : heads . append ( limit ) return heads , new_limit_to
def severity ( self ) : """Severity level of the event . One of ` ` INFO ` ` , ` ` WATCH ` ` , ` ` WARNING ` ` , ` ` DISTRESS ` ` , ` ` CRITICAL ` ` or ` ` SEVERE ` ` ."""
if self . _proto . HasField ( 'severity' ) : return yamcs_pb2 . Event . EventSeverity . Name ( self . _proto . severity ) return None
def reindex ( self , target , method = None , level = None , limit = None , tolerance = None ) : """Create index with target ' s values ( move / add / delete values as necessary ) Returns new _ index : pd . MultiIndex Resulting index indexer : np . ndarray or None Indices of output values in original inde...
# GH6552 : preserve names when reindexing to non - named target # ( i . e . neither Index nor Series ) . preserve_names = not hasattr ( target , 'names' ) if level is not None : if method is not None : raise TypeError ( 'Fill method not supported if level passed' ) # GH7774 : preserve dtype / tz if targ...
def argmin ( self , values ) : """return the index into values corresponding to the minimum value of the group Parameters values : array _ like , [ keys ] values to pick the argmin of per group Returns unique : ndarray , [ groups ] unique keys argmin : ndarray , [ groups ] index into value array , r...
keys , minima = self . min ( values ) minima = minima [ self . inverse ] # select the first occurence of the minimum in each group index = as_index ( ( self . inverse , values == minima ) ) return keys , index . sorter [ index . start [ - self . groups : ] ]
def cross_chan_coherence ( st1 , st2 , allow_shift = False , shift_len = 0.2 , i = 0 , xcorr_func = 'time_domain' ) : """Calculate cross - channel coherency . Determine the cross - channel coherency between two streams of multichannel seismic data . : type st1 : obspy . core . stream . Stream : param st1 : ...
cccoh = 0.0 kchan = 0 array_xcorr = get_array_xcorr ( xcorr_func ) for tr in st1 : tr2 = st2 . select ( station = tr . stats . station , channel = tr . stats . channel ) if len ( tr2 ) > 0 and tr . stats . sampling_rate != tr2 [ 0 ] . stats . sampling_rate : warnings . warn ( 'Sampling rates do not matc...
def get_recurring_bill_by_client ( self , * , customer_id , date_begin = None , date_final = None ) : """Consulta de las facturas que están pagadas o pendientes por pagar . Se puede consultar por cliente , por suscripción o por rango de fechas . Args : customer _ id : date _ begin : date _ final : Ret...
params = { "customerId" : customer_id , } if date_begin and date_final : params [ 'dateBegin' ] = date_begin . strftime ( '%Y-%m-%d' ) params [ 'dateFinal' ] = date_final . strftime ( '%Y-%m-%d' ) return self . client . _get ( self . url + 'recurringBill' , params = params , headers = self . get_headers ( ) )
def update_member_names ( oldasndict , pydr_input ) : """Update names in a member dictionary . Given an association dictionary with rootnames and a list of full file names , it will update the names in the member dictionary to contain ' _ * ' extension . For example a rootname of ' u9600201m ' will be repla...
omembers = oldasndict [ 'members' ] . copy ( ) nmembers = { } translated_names = [ f . split ( '.fits' ) [ 0 ] for f in pydr_input ] newkeys = [ fileutil . buildNewRootname ( file ) for file in pydr_input ] keys_map = list ( zip ( newkeys , pydr_input ) ) for okey , oval in list ( omembers . items ( ) ) : if okey i...
def send_messages ( self , sms_messages ) : """Sends one or more SmsMessage objects and returns the number of sms messages sent ."""
if not sms_messages : return num_sent = 0 for message in sms_messages : if self . _send ( message ) : num_sent += 1 return num_sent
def scan_for_field ( self , field_key ) : '''Scan for a field in the container and its enclosed fields : param field _ key : name of field to look for : return : field with name that matches field _ key , None if not found'''
if field_key == self . get_name ( ) : return self if field_key in self . _fields_dict : return self . _fields_dict [ field_key ] for field in self . _fields : if isinstance ( field , Container ) : resolved = field . scan_for_field ( field_key ) if resolved : return resolved retur...
def __shpHeader ( self ) : """Reads the header information from a . shp or . shx file ."""
if not self . shp : raise ShapefileException ( "Shapefile Reader requires a shapefile or file-like object. (no shp file found" ) shp = self . shp # File length ( 16 - bit word * 2 = bytes ) shp . seek ( 24 ) self . shpLength = unpack ( ">i" , shp . read ( 4 ) ) [ 0 ] * 2 # Shape type shp . seek ( 32 ) self . shapeT...
def select_one_song ( songs ) : """Display the songs returned by search api . : params songs : API [ ' result ' ] [ ' songs ' ] : return : a Song object ."""
if len ( songs ) == 1 : select_i = 0 else : table = PrettyTable ( [ 'Sequence' , 'Song Name' , 'Artist Name' ] ) for i , song in enumerate ( songs , 1 ) : table . add_row ( [ i , song [ 'name' ] , song [ 'ar' ] [ 0 ] [ 'name' ] ] ) click . echo ( table ) select_i = click . prompt ( 'Select o...