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def roll_down_capture ( returns , factor_returns , window = 10 , ** kwargs ) : """Computes the down capture measure over a rolling window . see documentation for : func : ` ~ empyrical . stats . down _ capture ` . ( pass all args , kwargs required ) Parameters returns : pd . Series or np . ndarray Daily r...
return roll ( returns , factor_returns , window = window , function = down_capture , ** kwargs )
def execute_log ( args , root_dir ) : """Print the current log file . Args : args [ ' keys ' ] ( int ) : If given , we only look at the specified processes . root _ dir ( string ) : The path to the root directory the daemon is running in ."""
# Print the logs of all specified processes if args . get ( 'keys' ) : config_dir = os . path . join ( root_dir , '.config/pueue' ) queue_path = os . path . join ( config_dir , 'queue' ) if os . path . exists ( queue_path ) : queue_file = open ( queue_path , 'rb' ) try : queue = ...
def format ( self , source ) : """Specifies the input data source format . : param source : string , name of the data source , e . g . ' json ' , ' parquet ' . > > > df = spark . read . format ( ' json ' ) . load ( ' python / test _ support / sql / people . json ' ) > > > df . dtypes [ ( ' age ' , ' bigint ...
self . _jreader = self . _jreader . format ( source ) return self
def submit ( self , selector , by = By . CSS_SELECTOR ) : """Alternative to self . driver . find _ element _ by _ * ( SELECTOR ) . submit ( )"""
if page_utils . is_xpath_selector ( selector ) : by = By . XPATH element = self . wait_for_element_visible ( selector , by = by , timeout = settings . SMALL_TIMEOUT ) element . submit ( ) self . __demo_mode_pause_if_active ( )
def stop ( self , timeout = 1.0 ) : """Stop the handler thread ( from another thread ) . Parameters timeout : float , optional Seconds to wait for server to have * started * ."""
if timeout : self . _running . wait ( timeout ) self . _running . clear ( ) # Make sure to wake the run thread . self . _wake . set ( )
def Xor ( * xs , simplify = True ) : """Expression exclusive or ( XOR ) operator If * simplify * is ` ` True ` ` , return a simplified expression ."""
xs = [ Expression . box ( x ) . node for x in xs ] y = exprnode . xor ( * xs ) if simplify : y = y . simplify ( ) return _expr ( y )
def get_nodekey ( self , token , types = types , coll_abc = collections . abc ) : '''Given a particular token , check the visitor instance for methods mathing the computed methodnames ( the function is a generator ) .'''
# Check the mro . for mro_type in type ( token ) . __mro__ : yield mro_type . __name__ # Check for callability . if callable ( token ) : yield 'callable' # Check for the collections . abc types . abc_types = ( 'Hashable' , 'Iterable' , 'Iterator' , 'Sized' , 'Container' , 'Callable' , 'Set' , 'MutableSet' , 'Ma...
def resume ( self , vehID ) : """resume ( string ) - > None Resumes the vehicle from the current stop ( throws an error if the vehicle is not stopped ) ."""
self . _connection . _beginMessage ( tc . CMD_SET_VEHICLE_VARIABLE , tc . CMD_RESUME , vehID , 1 + 4 ) self . _connection . _string += struct . pack ( "!Bi" , tc . TYPE_COMPOUND , 0 ) self . _connection . _sendExact ( )
def teecsv ( table , source = None , encoding = None , errors = 'strict' , write_header = True , ** csvargs ) : """Returns a table that writes rows to a CSV file as they are iterated over ."""
source = write_source_from_arg ( source ) csvargs . setdefault ( 'dialect' , 'excel' ) return teecsv_impl ( table , source = source , encoding = encoding , errors = errors , write_header = write_header , ** csvargs )
def load ( stream = None ) : """Loads filters from a stream , normally an open file . If one is not passed , filters are loaded from a default location within the project ."""
if stream : loads ( stream . read ( ) ) else : data = pkgutil . get_data ( insights . __name__ , _filename ) return loads ( data ) if data else None
def to_nifti ( obj , like = None , header = None , affine = None , extensions = Ellipsis , version = 1 ) : '''to _ nifti ( obj ) yields a Nifti2Image object that is as equivalent as possible to the given object obj . If obj is a Nifti2Image already , then it is returned unmolested ; other deduction rules are de...
from neuropythy . mri import Subject obj0 = obj # First go from like to explicit versions of affine and header : if like is not None : if isinstance ( like , nib . analyze . AnalyzeHeader ) or isinstance ( like , nib . freesurfer . mghformat . MGHHeader ) : if header is None : header = like ...
def string_to_identifier ( s , white_space_becomes = '_' ) : """Takes a string and makes it suitable for use as an identifier Translates to lower case Replaces white space by the white _ space _ becomes character ( default = underscore ) . Removes and punctuation ."""
import re s = s . lower ( ) s = re . sub ( r"\s+" , white_space_becomes , s ) # replace whitespace with underscores s = re . sub ( r"-" , "_" , s ) # replace hyphens with underscores s = re . sub ( r"[^A-Za-z0-9_]" , "" , s ) # remove everything that ' s not a character , a digit or a _ return s
def tritonast2arybo ( e , use_exprs = True , use_esf = False , context = None ) : '''Convert a subset of Triton ' s AST into Arybo ' s representation Args : e : Triton AST use _ esf : use ESFs when creating the final expression context : dictionnary that associates Triton expression ID to arybo expressions ...
children_ = e . getChildren ( ) children = ( tritonast2arybo ( c , use_exprs , use_esf , context ) for c in children_ ) reversed_children = ( tritonast2arybo ( c , use_exprs , use_esf , context ) for c in reversed ( children_ ) ) Ty = e . getType ( ) if Ty == TAstN . ZX : n = next ( children ) v = next ( childr...
def lossfn ( real_input , fake_input , compress , hparams , lsgan , name ) : """Loss function ."""
eps = 1e-12 with tf . variable_scope ( name ) : d1 = discriminator ( real_input , compress , hparams , "discriminator" ) d2 = discriminator ( fake_input , compress , hparams , "discriminator" , reuse = True ) if lsgan : dloss = tf . reduce_mean ( tf . squared_difference ( d1 , 0.9 ) ) + tf . reduce_...
def performSearch ( platformNames = [ ] , queries = [ ] , process = False , excludePlatformNames = [ ] ) : """Method to perform the search itself on the different platforms . Args : platforms : List of < Platform > objects . queries : List of queries to be performed . process : Whether to process all the pr...
# Grabbing the < Platform > objects platforms = platform_selection . getPlatformsByName ( platformNames , mode = "searchfy" , excludePlatformNames = excludePlatformNames ) results = [ ] for q in queries : for pla in platforms : # This returns a json . txt ! entities = pla . getInfo ( query = q , process = p...
def ema ( eqdata , ** kwargs ) : """Exponential moving average with the given span . Parameters eqdata : DataFrame Must have exactly 1 column on which to calculate EMA span : int , optional Span for exponential moving average . Cf . ` pandas . stats . moments . ewma < http : / / pandas . pydata . org / ...
if len ( eqdata . shape ) > 1 and eqdata . shape [ 1 ] != 1 : _selection = kwargs . get ( 'selection' , 'Adj Close' ) _eqdata = eqdata . loc [ : , _selection ] else : _eqdata = eqdata _span = kwargs . get ( 'span' , 20 ) _col = kwargs . get ( 'outputcol' , 'EMA' ) _emadf = pd . DataFrame ( index = _eqdata ....
def _normalize_encoding ( encoding ) : """returns normalized name for < encoding > see dist / src / Parser / tokenizer . c ' get _ normal _ name ( ) ' for implementation details / reference NOTE : for now , parser . suite ( ) raises a MemoryError when a bad encoding is used . ( SF bug # 979739)"""
if encoding is None : return None # lower ( ) + ' _ ' / ' - ' conversion encoding = encoding . replace ( '_' , '-' ) . lower ( ) if encoding == 'utf-8' or encoding . startswith ( 'utf-8-' ) : return 'utf-8' for variant in [ 'latin-1' , 'iso-latin-1' , 'iso-8859-1' ] : if ( encoding == variant or encoding . ...
def set_image ( self ) : """Parses image element and set values"""
temp_soup = self . full_soup for item in temp_soup . findAll ( 'item' ) : item . decompose ( ) image = temp_soup . find ( 'image' ) try : self . image_title = image . find ( 'title' ) . string except AttributeError : self . image_title = None try : self . image_url = image . find ( 'url' ) . string exce...
def listify ( * args ) : """Convert args to a list , unless there ' s one arg and it ' s a function , then acts a decorator ."""
if ( len ( args ) == 1 ) and callable ( args [ 0 ] ) : func = args [ 0 ] @ wraps ( func ) def _inner ( * args , ** kwargs ) : return list ( func ( * args , ** kwargs ) ) return _inner else : return list ( args )
def minimize ( func , x0 , data = None , method = None , lower_bounds = None , upper_bounds = None , constraints_func = None , nmr_observations = None , cl_runtime_info = None , options = None ) : """Minimization of one or more variables . For an easy wrapper of function maximization , see : func : ` maximize ` ....
if not method : method = 'Powell' cl_runtime_info = cl_runtime_info or CLRuntimeInfo ( ) if len ( x0 . shape ) < 2 : x0 = x0 [ ... , None ] lower_bounds = _bounds_to_array ( lower_bounds or np . ones ( x0 . shape [ 1 ] ) * - np . inf ) upper_bounds = _bounds_to_array ( upper_bounds or np . ones ( x0 . shape [ 1...
def _flattenComponent ( glyphSet , component ) : """Returns a list of tuples ( baseGlyph , transform ) of nested component ."""
glyph = glyphSet [ component . baseGlyph ] if not glyph . components : transformation = Transform ( * component . transformation ) return [ ( component . baseGlyph , transformation ) ] all_flattened_components = [ ] for nested in glyph . components : flattened_components = _flattenComponent ( glyphSet , nes...
def handle_set_services ( self , req ) : """Handles the POST v2 / < account > / . services call for setting services information . Can only be called by a reseller . admin . In the : func : ` handle _ get _ account ` ( GET v2 / < account > ) call , a section of the returned JSON dict is ` services ` . This se...
if not self . is_reseller_admin ( req ) : return self . denied_response ( req ) account = req . path_info_pop ( ) if req . path_info != '/.services' or not account or account [ 0 ] == '.' : return HTTPBadRequest ( request = req ) try : new_services = json . loads ( req . body ) except ValueError as err : ...
def respond ( self , text , sessionID = "general" ) : """Generate a response to the user input . : type text : str : param text : The string to be mapped : rtype : str"""
text = self . __normalize ( text ) previousText = self . __normalize ( self . conversation [ sessionID ] [ - 2 ] ) text_correction = self . __correction ( text ) current_topic = self . topic [ sessionID ] current_topic_order = current_topic . split ( "." ) while current_topic_order : try : return self . __r...
def meth_set_acl ( args ) : """Assign an ACL role to a list of users for a workflow ."""
acl_updates = [ { "user" : user , "role" : args . role } for user in set ( expand_fc_groups ( args . users ) ) if user != fapi . whoami ( ) ] id = args . snapshot_id if not id : # get the latest snapshot _ id for this method from the methods repo r = fapi . list_repository_methods ( namespace = args . namespace , n...
def dict ( self , key_depth = 1000 , tree_depth = 1 ) : """Creates a random # dict @ key _ depth : # int number of keys per @ tree _ depth to generate random values for @ tree _ depth : # int dict tree dimensions size , i . e . 1 = | { key : value } | 2 = | { key : { key : value } , key2 : { key2 : value2...
if not tree_depth : return self . _map_type ( ) return { self . randstr : self . dict ( key_depth , tree_depth - 1 ) for x in range ( key_depth ) }
def send_activation_email ( self , user ) : """Send the activation email . The activation key is the username , signed using TimestampSigner ."""
activation_key = self . get_activation_key ( user ) context = self . get_email_context ( activation_key ) context [ 'user' ] = user subject = render_to_string ( template_name = self . email_subject_template , context = context , request = self . request ) # Force subject to a single line to avoid header - injection # i...
def source_decode ( sourcecode , verbose = 0 ) : """Decode operator source and import operator class . Parameters sourcecode : string a string of operator source ( e . g ' sklearn . feature _ selection . RFE ' ) verbose : int , optional ( default : 0) How much information TPOT communicates while it ' s ru...
tmp_path = sourcecode . split ( '.' ) op_str = tmp_path . pop ( ) import_str = '.' . join ( tmp_path ) try : if sourcecode . startswith ( 'tpot.' ) : exec ( 'from {} import {}' . format ( import_str [ 4 : ] , op_str ) ) else : exec ( 'from {} import {}' . format ( import_str , op_str ) ) op_...
def latitude ( self , value ) : """Set latitude value ."""
self . _latitude = math . radians ( float ( value ) ) assert - self . PI / 2 <= self . _latitude <= self . PI / 2 , "latitude value should be between -90..90."
def calculate_maxgold ( gold_grid : list , rows : int , cols : int ) -> int : """Defines a function to solve the gold mine problem . Args : gold _ grid : a two - dimensional list containing the amount of gold in each cell . rows : number of rows in the gold grid . cols : number of columns in the gold grid ....
max_gold_values = [ [ 0 for _ in range ( cols ) ] for _ in range ( rows ) ] for column in reversed ( range ( cols ) ) : for row in range ( rows ) : right = max_gold_values [ row ] [ column + 1 ] if column != cols - 1 else 0 right_up = max_gold_values [ row - 1 ] [ column + 1 ] if row != 0 and column...
def do_IHaveRequest ( self , apdu ) : """Respond to a I - Have request ."""
if _debug : WhoHasIHaveServices . _debug ( "do_IHaveRequest %r" , apdu ) # check for required parameters if apdu . deviceIdentifier is None : raise MissingRequiredParameter ( "deviceIdentifier required" ) if apdu . objectIdentifier is None : raise MissingRequiredParameter ( "objectIdentifier required" ) if ...
def get_logging_fields ( self , model ) : """Returns a dictionary mapping of the fields that are used for keeping the acutal audit log entries ."""
rel_name = '_%s_audit_log_entry' % model . _meta . object_name . lower ( ) def entry_instance_to_unicode ( log_entry ) : try : result = '%s: %s %s at %s' % ( model . _meta . object_name , log_entry . object_state , log_entry . get_action_type_display ( ) . lower ( ) , log_entry . action_date , ) except ...
def run ( self , quiet = None , server = '' ) : """Start the tornado server , run forever . ' quiet ' and ' server ' arguments are no longer used , they are keep only for backward compatibility"""
try : loop = IOLoop ( ) http_server = HTTPServer ( WSGIContainer ( self . app ) ) http_server . listen ( self . port ) loop . start ( ) except socket . error as serr : # Re raise the socket error if not " [ Errno 98 ] Address already in use " if serr . errno != errno . EADDRINUSE : raise ser...
def union ( * lists , ** kwargs ) : """Ignore : % timeit len ( reduce ( set . union , map ( set , x ) ) ) % timeit len ( ut . union ( * x ) ) % timeit len ( ut . unique ( ut . flatten ( ut . lmap ( np . unique , x ) ) ) ) % timeit len ( ut . unique ( ut . flatten ( x ) ) ) % timeit len ( ut . union ( * x ...
if kwargs . get ( 'ordered' , True ) : return union_ordered ( * lists ) else : return list_union ( * lists )
def emit ( self , signal , * args ) : """Emits a signal through the dispatcher . : param signal | < str > * args | additional arguments"""
if not ( self . signalsBlocked ( ) or self . signalBlocked ( signal ) ) : super ( XViewDispatch , self ) . emit ( SIGNAL ( signal ) , * args )
def bootstrap ( parser = None , args = None , descriptors = None ) : """Bootstrap a feat process , handling command line arguments . @ param parser : the option parser to use ; more options will be added to the parser ; if not specified or None a new one will be created @ type parser : optparse . OptionPars...
tee = log . init ( ) # The purpose of having log buffer here , is to be able to dump the # log lines to a journal after establishing connection with it . # This is done in stage _ configure ( ) of net agency Startup procedure . tee . add_keeper ( 'buffer' , log . LogBuffer ( limit = 10000 ) ) # use the resolver from tw...
def has_enumerated_namespace_name ( self , namespace : str , name : str ) -> bool : """Check that the namespace is defined by an enumeration and that the name is a member ."""
return self . has_enumerated_namespace ( namespace ) and name in self . namespace_to_terms [ namespace ]
def _indent ( indent = 0 , quote = '' , indent_char = ' ' ) : """Indent util function , compute new indent _ string"""
if indent > 0 : indent_string = '' . join ( ( str ( quote ) , ( indent_char * ( indent - len ( quote ) ) ) ) ) else : indent_string = '' . join ( ( ( '\x08' * ( - 1 * ( indent - len ( quote ) ) ) ) , str ( quote ) ) ) if len ( indent_string ) : INDENT_STRINGS . append ( indent_string )
def _read_data ( file_obj , fo_encoding , value_count , bit_width ) : """Read data from the file - object using the given encoding . The data could be definition levels , repetition levels , or actual values ."""
vals = [ ] if fo_encoding == parquet_thrift . Encoding . RLE : seen = 0 while seen < value_count : values = encoding . read_rle_bit_packed_hybrid ( file_obj , bit_width ) if values is None : break # EOF was reached . vals += values seen += len ( values ) e...
def parse_intf_section ( interface ) : """Parse a single entry from show interfaces output . Different cases : mgmt0 is up admin state is up Ethernet2/1 is up admin state is up , Dedicated Interface Vlan1 is down ( Administratively down ) , line protocol is down , autostate enabled Ethernet154/1/48 is...
interface = interface . strip ( ) re_protocol = ( r"^(?P<intf_name>\S+?)\s+is\s+(?P<status>.+?)" r",\s+line\s+protocol\s+is\s+(?P<protocol>\S+).*$" ) re_intf_name_state = r"^(?P<intf_name>\S+) is (?P<intf_state>\S+).*" re_is_enabled_1 = r"^admin state is (?P<is_enabled>\S+)$" re_is_enabled_2 = r"^admin state is (?P<is_...
def translate ( offset , dtype = None ) : """Translate by an offset ( x , y , z ) . Parameters offset : array - like , shape ( 3 , ) Translation in x , y , z . dtype : dtype | None Output type ( if None , don ' t cast ) . Returns M : ndarray Transformation matrix describing the translation ."""
assert len ( offset ) == 3 x , y , z = offset M = np . array ( [ [ 1. , 0. , 0. , 0. ] , [ 0. , 1. , 0. , 0. ] , [ 0. , 0. , 1. , 0. ] , [ x , y , z , 1.0 ] ] , dtype ) return M
def clausulae_analysis ( prosody ) : """Return dictionary in which the key is a type of clausula and the value is its frequency . : param prosody : the prosody of a prose text ( must be in the format of the scansion produced by the scanner classes . : return : dictionary of prosody"""
prosody = '' . join ( prosody ) return { 'cretic + trochee' : prosody . count ( '¯˘¯¯x' ) , '4th paeon + trochee' : prosody . count ( '˘˘˘¯¯x' ) , '1st paeon + trochee' : prosody . count ( '¯˘˘˘¯x' ) , 'substituted cretic + trochee' : prosody . count ( '˘˘˘˘˘¯x' ) , '1st paeon + anapest' : prosody . count ( '¯˘˘˘˘˘x' )...
def generate_code_challenge ( verifier ) : """source : https : / / github . com / openstack / deb - python - oauth2client Creates a ' code _ challenge ' as described in section 4.2 of RFC 7636 by taking the sha256 hash of the verifier and then urlsafe base64 - encoding it . Args : verifier : bytestring , ...
digest = hashlib . sha256 ( verifier . encode ( 'utf-8' ) ) . digest ( ) return base64 . urlsafe_b64encode ( digest ) . rstrip ( b'=' ) . decode ( 'utf-8' )
def patch_worker_run_task ( ) : """Patches the ` ` luigi . worker . Worker . _ run _ task ` ` method to store the worker id and the id of its first task in the task . This information is required by the sandboxing mechanism"""
_run_task = luigi . worker . Worker . _run_task def run_task ( self , task_id ) : task = self . _scheduled_tasks [ task_id ] task . _worker_id = self . _id task . _worker_task = self . _first_task try : _run_task ( self , task_id ) finally : task . _worker_id = None task . _w...
def sequence_to_graph ( G , seq , color = 'black' ) : """Automatically construct graph given a sequence of characters ."""
for x in seq : if x . endswith ( "_1" ) : # Mutation G . node ( x , color = color , width = "0.1" , shape = "circle" , label = "" ) else : G . node ( x , color = color ) for a , b in pairwise ( seq ) : G . edge ( a , b , color = color )
def cut_matrix ( self , n ) : """The matrix of connections that are severed by this cut ."""
cm = np . zeros ( ( n , n ) ) for part in self . partition : from_ , to = self . direction . order ( part . mechanism , part . purview ) # All indices external to this part external = tuple ( set ( self . indices ) - set ( to ) ) cm [ np . ix_ ( from_ , external ) ] = 1 return cm
def close_stale_prs ( self , update , pull_request , scheduled ) : """Closes stale pull requests for the given update , links to the new pull request and deletes the stale branch . A stale PR is a PR that : - Is not merged - Is not closed - Has no commits ( except the bot commit ) : param update : : p...
closed = [ ] if self . bot_token and not pull_request . is_initial : for pr in self . pull_requests : close_pr = False same_title = pr . canonical_title ( self . config . pr_prefix ) == pull_request . canonical_title ( self . config . pr_prefix ) if scheduled and pull_request . is_scheduled ...
def remove_entity_headers ( headers , allowed = ( "expires" , "content-location" ) ) : """Remove all entity headers from a list or : class : ` Headers ` object . This operation works in - place . ` Expires ` and ` Content - Location ` headers are by default not removed . The reason for this is : rfc : ` 2616 ` ...
allowed = set ( x . lower ( ) for x in allowed ) headers [ : ] = [ ( key , value ) for key , value in headers if not is_entity_header ( key ) or key . lower ( ) in allowed ]
def generate_session_key ( hmac_secret = b'' ) : """: param hmac _ secret : optional HMAC : type hmac _ secret : : class : ` bytes ` : return : ( session _ key , encrypted _ session _ key ) tuple : rtype : : class : ` tuple `"""
session_key = random_bytes ( 32 ) encrypted_session_key = PKCS1_OAEP . new ( UniverseKey . Public , SHA1 ) . encrypt ( session_key + hmac_secret ) return ( session_key , encrypted_session_key )
def _isophote_list_to_table ( isophote_list ) : """Convert an ` ~ photutils . isophote . IsophoteList ` instance to a ` ~ astropy . table . QTable ` . Parameters isophote _ list : list of ` ~ photutils . isophote . Isophote ` or a ` ~ photutils . isophote . IsophoteList ` instance A list of isophotes . Re...
properties = OrderedDict ( ) properties [ 'sma' ] = 'sma' properties [ 'intens' ] = 'intens' properties [ 'int_err' ] = 'intens_err' properties [ 'eps' ] = 'ellipticity' properties [ 'ellip_err' ] = 'ellipticity_err' properties [ 'pa' ] = 'pa' properties [ 'pa_err' ] = 'pa_err' properties [ 'grad_r_error' ] = 'grad_rer...
def get_unspents ( address , blockchain_client = BlockcypherClient ( ) ) : """Get the spendable transaction outputs , also known as UTXOs or unspent transaction outputs ."""
if not isinstance ( blockchain_client , BlockcypherClient ) : raise Exception ( 'A BlockcypherClient object is required' ) url = '%s/addrs/%s?unspentOnly=true&includeScript=true' % ( BLOCKCYPHER_BASE_URL , address ) if blockchain_client . auth : r = requests . get ( url + '&token=' + blockchain_client . auth [ ...
def community_url ( self ) : """: return : e . g https : / / steamcommunity . com / profiles / 123456789 : rtype : : class : ` str `"""
suffix = { EType . Individual : "profiles/%s" , EType . Clan : "gid/%s" , } if self . type in suffix : url = "https://steamcommunity.com/%s" % suffix [ self . type ] return url % self . as_64 return None
def search ( self , q = None , advanced = False , limit = None , info = False , reset_query = True ) : """Execute a search and return the results , up to the ` ` SEARCH _ LIMIT ` ` . Arguments : q ( str ) : The query to execute . * * Default : * * The current helper - formed query , if any . There must be som...
# If q not specified , use internal , helper - built query if q is None : res = self . _ex_search ( info = info , limit = limit ) if reset_query : self . reset_query ( ) return res # If q was specified , run a totally independent query with a new SearchHelper # Init SearchHelper with query , then ca...
def fastdtw ( x , y , radius = 1 , dist = None ) : '''return the approximate distance between 2 time series with O ( N ) time and memory complexity Parameters x : array _ like input array 1 y : array _ like input array 2 radius : int size of neighborhood when expanding the path . A higher value will...
x , y , dist = __prep_inputs ( x , y , dist ) return __fastdtw ( x , y , radius , dist )
def _get_kvc ( kv_arg ) : '''Returns a tuple keys , values , count for kv _ arg ( which can be a dict or a tuple containing keys , values and optinally count .'''
if isinstance ( kv_arg , Mapping ) : return six . iterkeys ( kv_arg ) , six . itervalues ( kv_arg ) , len ( kv_arg ) assert 2 <= len ( kv_arg ) <= 3 , 'Argument must be a mapping or a sequence (keys, values, [len])' return ( kv_arg [ 0 ] , kv_arg [ 1 ] , kv_arg [ 2 ] if len ( kv_arg ) == 3 else len ( kv_arg [ 0 ] )...
def create_scree_plot ( data , o_filename , options ) : """Creates the scree plot . : param data : the eigenvalues . : param o _ filename : the name of the output files . : param options : the options . : type data : numpy . ndarray : type o _ filename : str : type options : argparse . Namespace"""
# Importing plt mpl . use ( "Agg" ) import matplotlib . pyplot as plt plt . ioff ( ) # Computing the cumulative sum cumul_data = np . cumsum ( data ) # Creating the figure and axes fig , axes = plt . subplots ( 2 , 1 , figsize = ( 8 , 16 ) ) # The title of the figure fig . suptitle ( options . scree_plot_title , fontsi...
def text ( self , data ) : """Generates SpaceCharacters and Characters tokens Depending on what ' s in the data , this generates one or more ` ` SpaceCharacters ` ` and ` ` Characters ` ` tokens . For example : > > > from html5lib . treewalkers . base import TreeWalker > > > # Give it an empty tree just s...
data = data middle = data . lstrip ( spaceCharacters ) left = data [ : len ( data ) - len ( middle ) ] if left : yield { "type" : "SpaceCharacters" , "data" : left } data = middle middle = data . rstrip ( spaceCharacters ) right = data [ len ( middle ) : ] if middle : yield { "type" : "Characters" , "data" : mi...
def _build ( self , args ) : '''Build a package'''
if len ( args ) < 2 : raise SPMInvocationError ( 'A path to a formula must be specified' ) self . abspath = args [ 1 ] . rstrip ( '/' ) comps = self . abspath . split ( '/' ) self . relpath = comps [ - 1 ] formula_path = '{0}/FORMULA' . format ( self . abspath ) if not os . path . exists ( formula_path ) : rais...
def merge ( base : Dict [ Any , Any ] , extension : Dict [ Any , Any ] ) -> Dict [ Any , Any ] : '''Merge extension into base recursively . * * Argumetnts * * : ` ` base ` ` : dictionary to overlay values onto : ` ` extension ` ` : dictionary to overlay with * * Return Value ( s ) * * Resulting dictionary...
_ = copy . deepcopy ( base ) for key , value in extension . items ( ) : if isinstance ( value , Dict ) and key in _ : _ [ key ] = merge ( _ [ key ] , value ) else : _ [ key ] = value return _
def query ( string ) : """query ( user string ) - - make http request to duckduckgo api , to get result in json format , then call parse _ result ."""
url = "https://api.duckduckgo.com/?q=" formating = "&format=json" query_string = url + '+' . join ( string ) + formating try : result = json . loads ( requests . get ( query_string ) . text ) except : print "I'm sorry! Something went wrong. Maybe we could try again later." return parse_result ( result )
def plot_samples ( self , prop , fig = None , label = True , histtype = 'step' , bins = 50 , lw = 3 , ** kwargs ) : """Plots histogram of samples of desired property . : param prop : Desired property ( must be legit column of samples ) : param fig : Argument for : func : ` plotutils . setfig ` ( ` ` None ` ...
setfig ( fig ) samples , stats = self . prop_samples ( prop ) fig = plt . hist ( samples , bins = bins , normed = True , histtype = histtype , lw = lw , ** kwargs ) plt . xlabel ( prop ) plt . ylabel ( 'Normalized count' ) if label : med , lo , hi = stats plt . annotate ( '$%.2f^{+%.2f}_{-%.2f}$' % ( med , hi ,...
def read ( self , pos , size , ** kwargs ) : """Reads some data from the file , storing it into memory . : param pos : The address to write the read data into memory : param size : The requested length of the read : return : The real length of the read"""
data , realsize = self . read_data ( size , ** kwargs ) if not self . state . solver . is_true ( realsize == 0 ) : self . state . memory . store ( pos , data , size = realsize ) return realsize
def grep_file ( query , item ) : """This function performs the actual grep on a given file ."""
return [ '%s: %s' % ( item , line ) for line in open ( item ) if re . search ( query , line ) ]
def normalize_variables ( cls , variables ) : """Make sure version is treated consistently"""
# if the version is False , empty string , etc , throw it out if variables . get ( 'version' , True ) in ( '' , False , '_NO_VERSION' , None ) : del variables [ 'version' ] return super ( PackageResource , cls ) . normalize_variables ( variables )
def _prop0 ( self , rho , T ) : """Ideal gas properties"""
rhoc = self . _constants . get ( "rhoref" , self . rhoc ) Tc = self . _constants . get ( "Tref" , self . Tc ) delta = rho / rhoc tau = Tc / T ideal = self . _phi0 ( tau , delta ) fio = ideal [ "fio" ] fiot = ideal [ "fiot" ] fiott = ideal [ "fiott" ] propiedades = _fase ( ) propiedades . h = self . R * T * ( 1 + tau * ...
def get_position ( self , ) : """Return a recommended position for this widget to appear This implemenation returns a position so that the widget is vertically centerd on the mouse and 10 pixels left of the mouse : returns : the position : rtype : QPoint : raises : None"""
pos = QtGui . QCursor . pos ( ) if self . _alignment & QtCore . Qt . AlignLeft == QtCore . Qt . AlignLeft : pos . setX ( pos . x ( ) - self . _offset ) elif self . _alignment & QtCore . Qt . AlignRight == QtCore . Qt . AlignRight : pos . setX ( pos . x ( ) - self . frameGeometry ( ) . width ( ) + self . _offset...
def sections ( self , kind = None ) : """Return all sections ( optionally of given kind only )"""
result = [ ] for section in self . parser . sections ( ) : # Selected kind only if provided if kind is not None : try : section_type = self . parser . get ( section , "type" ) if section_type != kind : continue except NoOptionError : continue r...
def register ( self , endpoint , procedure = None , options = None ) : """Register a procedure for remote calling . Replace : meth : ` autobahn . wamp . interface . IApplicationSession . register `"""
def proxy_endpoint ( * args , ** kwargs ) : return self . _callbacks_runner . put ( partial ( endpoint , * args , ** kwargs ) ) return self . _async_session . register ( proxy_endpoint , procedure = procedure , options = options )
def locateChild ( self , ctx , segments ) : """Return a Deferred which will fire with the customized version of the resource being located ."""
D = defer . maybeDeferred ( self . currentResource . locateChild , ctx , segments ) def finishLocating ( ( nextRes , nextPath ) ) : custom = ixmantissa . ICustomizable ( nextRes , None ) if custom is not None : return ( custom . customizeFor ( self . forWho ) , nextPath ) self . currentResource = ne...
def _remove_regions ( in_file , remove_beds , ext , data ) : """Subtract a list of BED files from an input BED . General approach handling none , one and more remove _ beds ."""
from bcbio . variation import bedutils out_file = "%s-%s.bed" % ( utils . splitext_plus ( in_file ) [ 0 ] , ext ) if not utils . file_uptodate ( out_file , in_file ) : with file_transaction ( data , out_file ) as tx_out_file : with bedtools_tmpdir ( data ) : if len ( remove_beds ) == 0 : ...
def _get ( self , components , picker , ** params ) : """Generic get which handles call to api and setting of results Return : Results object"""
url = '/' . join ( ( self . base , ) + components ) headers = { "Authorization" : "Token token=" + self . _token } params [ 'page' ] = params . get ( 'page' ) or self . page params [ 'per_page' ] = params . get ( 'per_page' ) or self . per_page r = requests . get ( "." . join ( [ url , self . format ] ) , params = para...
def dispatch ( self , * args , ** kwargs ) : """Only staff members can access this view"""
return super ( GetAppListJsonView , self ) . dispatch ( * args , ** kwargs )
def _CheckStorageFile ( self , storage_file_path ) : # pylint : disable = arguments - differ """Checks if the storage file path is valid . Args : storage _ file _ path ( str ) : path of the storage file . Raises : BadConfigOption : if the storage file path is invalid ."""
if os . path . exists ( storage_file_path ) : if not os . path . isfile ( storage_file_path ) : raise errors . BadConfigOption ( 'Storage file: {0:s} already exists and is not a file.' . format ( storage_file_path ) ) logger . warning ( 'Appending to an already existing storage file.' ) dirname = os . p...
def get_words ( file_path = None , content = None , extension = None ) : """Extract all words from a source code file to be used in code completion . Extract the list of words that contains the file in the editor , to carry out the inline completion similar to VSCode ."""
if ( file_path is None and ( content is None or extension is None ) or file_path and content and extension ) : error_msg = ( 'Must provide `file_path` or `content` and `extension`' ) raise Exception ( error_msg ) if file_path and content is None and extension is None : extension = os . path . splitext ( fil...
def get ( self , request , * args , ** kwargs ) : """redirect user to captive page with the social auth token in the querystring ( which will allow the captive page to send the token to freeradius )"""
if not request . GET . get ( 'cp' ) : return HttpResponse ( _ ( 'missing cp GET param' ) , status = 400 ) self . authorize ( request , * args , ** kwargs ) return HttpResponseRedirect ( self . get_redirect_url ( request ) )
def distance_restraint_force ( self , atoms , distances , strengths ) : """Parameters atoms : tuple of tuple of int or str Pair of atom indices to be restrained , with shape ( n , 2 ) , like ( ( a1 , a2 ) , ( a3 , a4 ) ) . Items can be str compatible with MDTraj DSL . distances : tuple of float Equilibriu...
system = self . system force = mm . HarmonicBondForce ( ) force . setUsesPeriodicBoundaryConditions ( self . system . usesPeriodicBoundaryConditions ( ) ) for pair , distance , strength in zip ( atoms , distances , strengths ) : indices = [ ] for atom in pair : if isinstance ( atom , str ) : ...
def combine_sets ( * sets ) : """Combine multiple sets to create a single larger set ."""
combined = set ( ) for s in sets : combined . update ( s ) return combined
def load_from_environ ( ) : """Load the SMC URL , API KEY and optional SSL certificate from the environment . Fields are : : SMC _ ADDRESS = http : / / 1.1.1.1:8082 SMC _ API _ KEY = 123abc SMC _ CLIENT _ CERT = path / to / cert SMC _ TIMEOUT = 30 ( seconds ) SMC _ API _ VERSION = 6.1 ( optional - use...
try : from urllib . parse import urlparse except ImportError : from urlparse import urlparse smc_address = os . environ . get ( 'SMC_ADDRESS' , '' ) smc_apikey = os . environ . get ( 'SMC_API_KEY' , '' ) smc_timeout = os . environ . get ( 'SMC_TIMEOUT' , None ) api_version = os . environ . get ( 'SMC_API_VERSIO...
def attribute_name ( self , attribute_name ) : """Sets the attribute _ name of this CatalogQueryRange . The name of the attribute to be searched . : param attribute _ name : The attribute _ name of this CatalogQueryRange . : type : str"""
if attribute_name is None : raise ValueError ( "Invalid value for `attribute_name`, must not be `None`" ) if len ( attribute_name ) < 1 : raise ValueError ( "Invalid value for `attribute_name`, length must be greater than or equal to `1`" ) self . _attribute_name = attribute_name
def render ( template , ** kwargs ) : """Renders the HTML containing provided summaries . The summary has to be an instance of summary . Summary , or at least contain similar properties : title , image , url , description and collections : titles , images , descriptions ."""
import jinja2 import os . path as path searchpath = path . join ( path . dirname ( __file__ ) , "templates" ) loader = jinja2 . FileSystemLoader ( searchpath = searchpath ) env = jinja2 . Environment ( loader = loader ) temp = env . get_template ( template ) return temp . render ( ** kwargs )
def _read_htm_ids ( self , mount_point ) : """! Function scans mbed . htm to get information about TargetID . @ param mount _ point mbed mount point ( disk / drive letter ) @ return Function returns targetID , in case of failure returns None . @ details Note : This function should be improved to scan variety ...
result = { } target_id = None for line in self . _htm_lines ( mount_point ) : target_id = target_id or self . _target_id_from_htm ( line ) return target_id , result
def _set_default_serializer ( self , name ) : """Set the default serialization method used by this library . : param name : The name of the registered serialization method . For example , ` ` json ` ` ( default ) , ` ` pickle ` ` , ` ` yaml ` ` , or any custom methods registered using : meth : ` register ` . ...
try : ( self . _default_content_type , self . _default_content_encoding , self . _default_encode ) = self . _encoders [ name ] except KeyError : raise SerializerNotInstalled ( "No encoder installed for %s" % name )
def get_shared_memory_bytes ( ) : """Get the size of the shared memory file system . Returns : The size of the shared memory file system in bytes ."""
# Make sure this is only called on Linux . assert sys . platform == "linux" or sys . platform == "linux2" shm_fd = os . open ( "/dev/shm" , os . O_RDONLY ) try : shm_fs_stats = os . fstatvfs ( shm_fd ) # The value shm _ fs _ stats . f _ bsize is the block size and the # value shm _ fs _ stats . f _ bavail i...
def run ( self ) : """Runs this step until it has completed successfully , or been skipped ."""
stop_watcher = threading . Event ( ) watcher = None if self . watch_func : watcher = threading . Thread ( target = self . watch_func , args = ( self . stack , stop_watcher ) ) watcher . start ( ) try : while not self . done : self . _run_once ( ) finally : if watcher : stop_watcher . set...
def indices_within_segments ( times , segment_files , ifo = None , segment_name = None ) : """Return the list of indices that should be vetoed by the segments in the list of veto _ files . Parameters times : numpy . ndarray of integer type Array of gps start times segment _ files : string or list of strin...
veto_segs = segmentlist ( [ ] ) indices = numpy . array ( [ ] , dtype = numpy . uint32 ) for veto_file in segment_files : veto_segs += select_segments_by_definer ( veto_file , segment_name , ifo ) veto_segs . coalesce ( ) start , end = segments_to_start_end ( veto_segs ) if len ( start ) > 0 : idx = indices_wit...
def emit_var_assign ( self , var , t ) : """Emits code for storing a value into a variable : param var : variable ( node ) to be updated : param t : the value to emmit ( e . g . a _ label , a const , a tN . . . )"""
p = '*' if var . byref else '' # Indirection prefix if self . O_LEVEL > 1 and not var . accessed : return if not var . type_ . is_basic : raise NotImplementedError ( ) if var . scope == SCOPE . global_ : self . emit ( 'store' + self . TSUFFIX ( var . type_ ) , var . mangled , t ) elif var . scope == SCOPE ....
def iter_rows ( self , start = None , end = None ) : """Iterate each of the Region rows in this region"""
start = start or 0 end = end or self . nrows for i in range ( start , end ) : yield self . iloc [ i , : ]
def get ( self , sensor_type = 'temperature_core' ) : """Get sensors list ."""
self . __update__ ( ) if sensor_type == 'temperature_core' : ret = [ s for s in self . sensors_list if s [ 'unit' ] == SENSOR_TEMP_UNIT ] elif sensor_type == 'fan_speed' : ret = [ s for s in self . sensors_list if s [ 'unit' ] == SENSOR_FAN_UNIT ] else : # Unknown type logger . debug ( "Unknown sensor type ...
def is_java_jni_project ( self ) : """Indicates if the project ' s main binary is a Java Archive , which interacts during its execution with native libraries ( via JNI ) ."""
if self . _is_java_jni_project is None : self . _is_java_jni_project = isinstance ( self . arch , ArchSoot ) and self . simos . is_javavm_with_jni_support return self . _is_java_jni_project
def PathExists ( v ) : """Verify the path exists , regardless of its type . > > > os . path . basename ( PathExists ( ) ( _ _ file _ _ ) ) . startswith ( ' validators . py ' ) True > > > with raises ( Invalid , ' path does not exist ' ) : . . . PathExists ( ) ( " random _ filename _ goes _ here . py " ) >...
try : if v : v = str ( v ) return os . path . exists ( v ) else : raise PathInvalid ( "Not a Path" ) except TypeError : raise PathInvalid ( "Not a Path" )
def wait_for_empty_queue ( self , wait_log_interval = 0 , wait_reason = '' ) : """Sit around and wait for the queue to become empty parameters : wait _ log _ interval - while sleeping , it is helpful if the thread periodically announces itself so that we know that it is still alive . This number is the ti...
seconds = 0 while True : if self . task_queue . empty ( ) : break self . quit_check ( ) if wait_log_interval and not seconds % wait_log_interval : self . logger . info ( '%s: %dsec so far' , wait_reason , seconds ) self . quit_check ( ) seconds += 1 time . sleep ( 1.0 )
def in6_get6to4Prefix ( addr ) : """Returns the / 48 6to4 prefix associated with provided IPv4 address On error , None is returned . No check is performed on public / private status of the address"""
try : addr = inet_pton ( socket . AF_INET , addr ) addr = inet_ntop ( socket . AF_INET6 , b'\x20\x02' + addr + b'\x00' * 10 ) except : return None return addr
def rungtd1d ( time : Union [ datetime , str , np . ndarray ] , altkm : np . ndarray , glat : float , glon : float ) -> xarray . Dataset : """This is the " atomic " function looped by other functions"""
time = todt64 ( time ) # % % get solar parameters for date f107Ap = gi . getApF107 ( time , smoothdays = 81 ) f107a = f107Ap [ 'f107s' ] . item ( ) f107 = f107Ap [ 'f107' ] . item ( ) Ap = f107Ap [ 'Ap' ] . item ( ) # % % dimensions altkm = np . atleast_1d ( altkm ) assert altkm . ndim == 1 assert isinstance ( glon , (...
def enumeration ( values , converter = str , default = '' ) : """Return an enumeration string based on the given values . The following four examples show the standard output of function | enumeration | : > > > from hydpy . core . objecttools import enumeration > > > enumeration ( ( ' text ' , 3 , [ ] ) ) ...
values = tuple ( converter ( value ) for value in values ) if not values : return default if len ( values ) == 1 : return values [ 0 ] if len ( values ) == 2 : return ' and ' . join ( values ) return ', and ' . join ( ( ', ' . join ( values [ : - 1 ] ) , values [ - 1 ] ) )
def has_layer ( self , class_ : Type [ L ] , became : bool = True ) -> bool : """Test the presence of a given layer type . : param class _ : Layer class you ' re interested in . : param became : Allow transformed layers in results"""
return ( class_ in self . _index or ( became and class_ in self . _transformed ) )
def _rv_standard ( self , word , vowels ) : """Return the standard interpretation of the string region RV . If the second letter is a consonant , RV is the region after the next following vowel . If the first two letters are vowels , RV is the region after the next following consonant . Otherwise , RV is th...
rv = "" if len ( word ) >= 2 : if word [ 1 ] not in vowels : for i in range ( 2 , len ( word ) ) : if word [ i ] in vowels : rv = word [ i + 1 : ] break elif word [ : 2 ] in vowels : for i in range ( 2 , len ( word ) ) : if word [ i ] not i...
def IntegerAbs ( input_vertex : vertex_constructor_param_types , label : Optional [ str ] = None ) -> Vertex : """Takes the absolute value of a vertex : param input _ vertex : the vertex"""
return Integer ( context . jvm_view ( ) . IntegerAbsVertex , label , cast_to_integer_vertex ( input_vertex ) )
def filter_headers ( criterion ) : """Filter already loaded headers against some criterion . The criterion function must accept a single argument , which is an instance of sastool . classes2 . header . Header , or one of its subclasses . The function must return True if the header is to be kept or False if it...
ip = get_ipython ( ) for headerkind in [ 'processed' , 'raw' ] : for h in ip . user_ns [ '_headers' ] [ headerkind ] [ : ] : if not criterion ( h ) : ip . user_ns [ '_headers' ] [ headerkind ] . remove ( h ) ip . user_ns [ 'allsamplenames' ] = { h . title for h in ip . user_ns [ '_headers' ] [ '...
def validate ( cls , mapper_spec ) : """Validates mapper spec . Args : mapper _ spec : The MapperSpec for this InputReader . Raises : BadReaderParamsError : required parameters are missing or invalid ."""
if mapper_spec . input_reader_class ( ) != cls : raise BadReaderParamsError ( "Input reader class mismatch" ) params = _get_params ( mapper_spec ) if cls . BATCH_SIZE_PARAM in params : try : batch_size = int ( params [ cls . BATCH_SIZE_PARAM ] ) if batch_size < 1 : raise BadReaderPar...
def get_user ( self , user_id = None , username = None , email = None ) : """Returns the user specified by either ID , username or email . Since more than user can have the same email address , searching by that term will return a list of 1 or more User objects . Searching by username or ID will return a sing...
if user_id : uri = "/users/%s" % user_id elif username : uri = "/users?name=%s" % username elif email : uri = "/users?email=%s" % email else : raise ValueError ( "You must include one of 'user_id', " "'username', or 'email' when calling get_user()." ) resp , resp_body = self . method_get ( uri ) if resp...
def iteration ( self , node_status = True ) : """Execute a single model iteration : return : Iteration _ id , Incremental node status ( dictionary node - > status )"""
# One iteration changes the opinion of all agents using the following procedure : # - first all agents communicate with institutional information I using a deffuant like rule # - then random pairs of agents are selected to interact ( N pairs ) # - interaction depends on state of agents but also internal cognitive struc...