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def prt_goids ( self , goids = None , prtfmt = None , sortby = True , prt = sys . stdout ) : """Given GO IDs , print decriptive info about each GO Term ."""
if goids is None : goids = self . go_sources nts = self . get_nts ( goids , sortby ) if prtfmt is None : prtfmt = self . prt_attr [ 'fmta' ] for ntgo in nts : key2val = ntgo . _asdict ( ) prt . write ( "{GO}\n" . format ( GO = prtfmt . format ( ** key2val ) ) ) return nts
async def proposal ( self ) : """Get the proposal in question . Actually just the first proposal with the same name , but the chance of a collision is tiny . Returns awaitable of : class : ` aionationstates . Proposal ` The proposal submitted . Raises aionationstates . NotFound If the proposal has s...
proposals = await aionationstates . wa . proposals ( ) for proposal in proposals : if ( proposal . name == self . proposal_name ) : return proposal raise aionationstates . NotFound
def load_dictionary ( self , filename , encoding = "utf-8" ) : """Load in a pre - built word frequency list Args : filename ( str ) : The filepath to the json ( optionally gzipped ) file to be loaded encoding ( str ) : The encoding of the dictionary"""
with load_file ( filename , encoding ) as data : self . _dictionary . update ( json . loads ( data . lower ( ) , encoding = encoding ) ) self . _update_dictionary ( )
def srandmember ( self , name , number = None ) : """Emulate srandmember ."""
redis_set = self . _get_set ( name , 'SRANDMEMBER' ) if not redis_set : return None if number is None else [ ] if number is None : return choice ( list ( redis_set ) ) elif number > 0 : return sample ( list ( redis_set ) , min ( number , len ( redis_set ) ) ) else : return [ choice ( list ( redis_set ) ...
def get_config_node ( self ) : '''get _ config _ node High - level api : get _ config _ node returns an Element node in the config tree , which is corresponding to the URL in the Restconf GET reply . Returns Element A config node .'''
default_ns = '' config_node = etree . Element ( config_tag , nsmap = { 'nc' : nc_url } ) for index , url_piece in enumerate ( self . _url_pieces ) : if index == len ( self . _url_pieces ) - 1 : config_node_parent = self . copy ( config_node ) node_name , values = self . parse_url_piece ( url_piece ) ...
def _validate_path ( validation_context , path , end_entity_name_override = None ) : """Internal copy of validate _ path ( ) that allows overriding the name of the end - entity certificate as used in exception messages . This functionality is used during chain validation when dealing with indirect CRLs issuer o...
if not isinstance ( path , ValidationPath ) : raise TypeError ( pretty_message ( ''' path must be an instance of certvalidator.path.ValidationPath, not %s ''' , type_name ( path ) ) ) if not isinstance ( validation_context , ValidationContext ) : raise TypeError ( pretty_mess...
def ordinal ( value ) : '''Converts a number to its ordinal representation . : param value : number > > > print ( ordinal ( 1 ) ) 1st > > > print ( ordinal ( 11 ) ) 11th > > > print ( ordinal ( 101 ) ) 101st > > > print ( ordinal ( 104 ) ) 104th > > > print ( ordinal ( 113 ) ) 113th > > > pr...
try : value = int ( value ) except ( TypeError , ValueError ) : raise ValueError if value % 100 in ( 11 , 12 , 13 ) : return '%d%s' % ( value , ORDINAL_SUFFIX [ 0 ] ) else : return '%d%s' % ( value , ORDINAL_SUFFIX [ value % 10 ] )
def convert_reshape ( net , node , module , builder ) : """Converts a reshape layer from mxnet to coreml . This doesn ' t currently handle the deprecated parameters for the reshape layer . Parameters network : net An mxnet network object . layer : node Node to convert . module : module A module for ...
input_name , output_name = _get_input_output_name ( net , node ) name = node [ 'name' ] target_shape = node [ 'shape' ] if any ( item <= 0 for item in target_shape ) : raise NotImplementedError ( 'Special dimensional values less than or equal to 0 are not supported yet.' 'Feel free to file an issue here: https://gi...
def index_queryset ( self , using = None ) : """Used when the entire index for model is updated ."""
kwargs = { "active" : True } # if permissions are enabled then we want only public pages # https : / / github . com / leonardo - modules / leonardo - module - pagepermissions if hasattr ( Page ( ) , 'permissions' ) : kwargs [ 'permissions__isnull' ] = True # https : / / github . com / leonardo - modules / leonardo ...
def hybrid_forward ( self , F , inputs ) : # pylint : disable = arguments - differ """Compute context insensitive token embeddings for ELMo representations . Parameters inputs : NDArray Shape ( batch _ size , sequence _ length , max _ character _ per _ token ) of character ids representing the current batch...
# the character id embedding # ( batch _ size * sequence _ length , max _ chars _ per _ token , embed _ dim ) character_embedding = self . _char_embedding ( inputs . reshape ( ( - 1 , self . _max_chars_per_token ) ) ) character_embedding = F . transpose ( character_embedding , axes = ( 1 , 0 , 2 ) ) token_embedding = s...
def cmd_arp_sniff ( iface ) : """Listen for ARP packets and show information for each device . Columns : Seconds from last packet | IP | MAC | Vendor Example : 1 192.168.0.1 a4:08 : f5:19:17 : a4 Sagemcom Broadband SAS 7 192.168.0.2 64 : bc : 0c : 33 : e5:57 LG Electronics ( Mobile Communications ) 2 192....
conf . verb = False if iface : conf . iface = iface print ( "Waiting for ARP packets..." , file = sys . stderr ) sniff ( filter = "arp" , store = False , prn = procpkt )
def _argsort_and_resolve_ties ( time , random_state ) : """Like numpy . argsort , but resolves ties uniformly at random"""
n_samples = len ( time ) order = numpy . argsort ( time , kind = "mergesort" ) i = 0 while i < n_samples - 1 : inext = i + 1 while inext < n_samples and time [ order [ i ] ] == time [ order [ inext ] ] : inext += 1 if i + 1 != inext : # resolve ties randomly random_state . shuffle ( order [ ...
def get_image ( self , digest , blob , mime_type , index , size = 500 ) : """Return an image for the given content , only if it already exists in the image cache ."""
# Special case , for now ( XXX ) . if mime_type . startswith ( "image/" ) : return "" cache_key = f"img:{index}:{size}:{digest}" return self . cache . get ( cache_key )
def file_selection ( multiple = False , directory = False , save = False , confirm_overwrite = False , filename = None , title = "" , width = DEFAULT_WIDTH , height = DEFAULT_HEIGHT , timeout = None ) : """Open a file selection window : param multiple : allow multiple file selection : type multiple : bool : p...
dialog = ZFileSelection ( multiple , directory , save , confirm_overwrite , filename , title , width , height , timeout ) dialog . run ( ) return dialog . response
def _mute ( self ) : """mute vlc"""
if self . muted : self . _sendCommand ( "volume {}\n" . format ( self . actual_volume ) ) if logger . isEnabledFor ( logging . DEBUG ) : logger . debug ( 'VLC unmuted: {0} ({1}%)' . format ( self . actual_volume , int ( 100 * self . actual_volume / self . max_volume ) ) ) else : if self . actual_vol...
def remove_member_from ( self , leaderboard_name , member ) : '''Remove the optional member data for a given member in the named leaderboard . @ param leaderboard _ name [ String ] Name of the leaderboard . @ param member [ String ] Member name .'''
pipeline = self . redis_connection . pipeline ( ) pipeline . zrem ( leaderboard_name , member ) pipeline . hdel ( self . _member_data_key ( leaderboard_name ) , member ) pipeline . execute ( )
def _get_efron_values_batch ( self , X , T , E , weights , beta ) : # pylint : disable = too - many - locals """Assumes sorted on ascending on T Calculates the first and second order vector differentials , with respect to beta . A good explanation for how Efron handles ties . Consider three of five subjects who...
n , d = X . shape hessian = np . zeros ( ( d , d ) ) gradient = np . zeros ( ( d , ) ) log_lik = 0 # weights = weights [ : , None ] # Init risk and tie sums to zero risk_phi , tie_phi = 0 , 0 risk_phi_x , tie_phi_x = np . zeros ( ( d , ) ) , np . zeros ( ( d , ) ) risk_phi_x_x , tie_phi_x_x = np . zeros ( ( d , d ) ) ,...
def is_homozygous ( self ) : '''Returns true iff this variant has a GT field and is homozygous , which here means that the genotype is n / n ( where n can be any number ) .'''
if self . FORMAT is None : return False else : genotypes = set ( self . FORMAT . get ( 'GT' , '0/1' ) . split ( '/' ) ) return '.' not in genotypes and len ( genotypes ) == 1
def is_unused ( input , model_file = None , model_proto = None , name = None ) : """Returns true if input id is unused piece . Args : input : An arbitrary tensor of int32. model _ file : The sentencepiece model file path . model _ proto : The sentencepiece model serialized proto . Either ` model _ file ` ...
return _gen_sentencepiece_processor_op . sentencepiece_get_piece_type ( input , model_file = model_file , model_proto = model_proto , name = name , piece_type = 2 )
def edges ( self , tail_head_iter ) : """Create a bunch of edges . Args : tail _ head _ iter : Iterable of ` ` ( tail _ name , head _ name ) ` ` pairs ."""
edge = self . _edge_plain quote = self . _quote_edge lines = ( edge % ( quote ( t ) , quote ( h ) ) for t , h in tail_head_iter ) self . body . extend ( lines )
def define_hardware_breakpoint ( self , dwThreadId , address , triggerFlag = BP_BREAK_ON_ACCESS , sizeFlag = BP_WATCH_DWORD , condition = True , action = None ) : """Creates a disabled hardware breakpoint at the given address . @ see : L { has _ hardware _ breakpoint } , L { get _ hardware _ breakpoint } , ...
thread = self . system . get_thread ( dwThreadId ) bp = HardwareBreakpoint ( address , triggerFlag , sizeFlag , condition , action ) begin = bp . get_address ( ) end = begin + bp . get_size ( ) if dwThreadId in self . __hardwareBP : bpSet = self . __hardwareBP [ dwThreadId ] for oldbp in bpSet : old_beg...
def load_configuration ( conf_path ) : """Load and validate test configuration . : param conf _ path : path to YAML configuration file . : return : configuration as dict ."""
with open ( conf_path ) as f : conf_dict = yaml . load ( f ) validate_config ( conf_dict ) return conf_dict
def google_get_token ( self , config , prefix ) : """Make request to Google API to get token ."""
params = { 'code' : self . request_args_get ( 'code' , default = '' ) , 'client_id' : self . google_api_client_id , 'client_secret' : self . google_api_client_secret , 'redirect_uri' : self . scheme_host_port_prefix ( 'http' , config . host , config . port , prefix ) + '/home' , 'grant_type' : 'authorization_code' , } ...
def expandEntitiesFromEmail ( e ) : """Method that receives an email an creates linked entities Args : e : Email to verify . Returns : Three different values : email , alias and domain in a list ."""
# Grabbing the email email = { } email [ "type" ] = "i3visio.email" email [ "value" ] = e email [ "attributes" ] = [ ] # Grabbing the alias alias = { } alias [ "type" ] = "i3visio.alias" alias [ "value" ] = e . split ( "@" ) [ 0 ] alias [ "attributes" ] = [ ] # Grabbing the domain domain = { } domain [ "type" ] = "i3vi...
def press ( self ) : '''press key via name or key code . Supported key name includes : home , back , left , right , up , down , center , menu , search , enter , delete ( or del ) , recent ( recent apps ) , volume _ up , volume _ down , volume _ mute , camera , power . Usage : d . press . back ( ) # press ...
@ param_to_property ( key = [ "home" , "back" , "left" , "right" , "up" , "down" , "center" , "menu" , "search" , "enter" , "delete" , "del" , "recent" , "volume_up" , "volume_down" , "volume_mute" , "camera" , "power" ] ) def _press ( key , meta = None ) : if isinstance ( key , int ) : return self . server...
def _handle_subscribed ( self , * args , chanId = None , channel = None , ** kwargs ) : """Handles responses to subscribe ( ) commands - registers a channel id with the client and assigns a data handler to it . : param chanId : int , represent channel id as assigned by server : param channel : str , represent...
log . debug ( "_handle_subscribed: %s - %s - %s" , chanId , channel , kwargs ) if chanId in self . channels : raise AlreadyRegisteredError ( ) self . _heartbeats [ chanId ] = time . time ( ) try : channel_key = ( 'raw_' + channel if kwargs [ 'prec' ] . startswith ( 'R' ) and channel == 'book' else channel ) exc...
def _parse_metadata ( self , meta ) : """Return the dict containing document metadata"""
formatted_fields = self . settings [ 'FORMATTED_FIELDS' ] output = collections . OrderedDict ( ) for name , value in meta . items ( ) : name = name . lower ( ) if name in formatted_fields : rendered = self . _render ( value ) . strip ( ) output [ name ] = self . process_metadata ( name , rendere...
def rect_to_cyl_vec ( vx , vy , vz , X , Y , Z , cyl = False ) : """NAME : rect _ to _ cyl _ vec PURPOSE : transform vectors from rectangular to cylindrical coordinates vectors INPUT : vx - vy - vz - X - X Y - Y Z - Z cyl - if True , X , Y , Z are already cylindrical OUTPUT : vR , vT , vz ...
if not cyl : R , phi , Z = rect_to_cyl ( X , Y , Z ) else : phi = Y vr = + vx * sc . cos ( phi ) + vy * sc . sin ( phi ) vt = - vx * sc . sin ( phi ) + vy * sc . cos ( phi ) return ( vr , vt , vz )
def RemoveProcessedTaskStorage ( self , task ) : """Removes a processed task storage . Args : task ( Task ) : task . Raises : IOError : if the task storage does not exist . OSError : if the task storage does not exist ."""
if task . identifier not in self . _task_storage_writers : raise IOError ( 'Storage writer for task: {0:s} does not exist.' . format ( task . identifier ) ) del self . _task_storage_writers [ task . identifier ]
def to_ipv6 ( key ) : """Get IPv6 address from a public key ."""
if key [ - 2 : ] != '.k' : raise ValueError ( 'Key does not end with .k' ) key_bytes = base32 . decode ( key [ : - 2 ] ) hash_one = sha512 ( key_bytes ) . digest ( ) hash_two = sha512 ( hash_one ) . hexdigest ( ) return ':' . join ( [ hash_two [ i : i + 4 ] for i in range ( 0 , 32 , 4 ) ] )
def eta_hms ( seconds , always_show_hours = False , always_show_minutes = False , hours_leading_zero = False ) : """Converts seconds remaining into a human readable timestamp ( e . g . hh : mm : ss , h : mm : ss , mm : ss , or ss ) . Positional arguments : seconds - - integer / float indicating seconds remainin...
# Convert seconds to other units . final_hours , final_minutes , final_seconds = 0 , 0 , seconds if final_seconds >= 3600 : final_hours = int ( final_seconds / 3600.0 ) final_seconds -= final_hours * 3600 if final_seconds >= 60 : final_minutes = int ( final_seconds / 60.0 ) final_seconds -= final_minute...
def _get_location_descriptor ( self , location ) : """Get corresponding : class : ` LocationDescriptor ` object from a string or a : class : ` LocationDescriptor ` itself . Args : location : a string or a : class : ` LocationDescriptor ` . Returns : A corresponding : class : ` LocationDescriptor ` object . ...
loc_descriptor = None if isinstance ( location , basestring ) : loc_descriptor = LocationDescriptor ( location ) elif isinstance ( location , LocationDescriptor ) : loc_descriptor = location else : raise RuntimeError ( "Argument is neither a string nor a self._nbr_of_nodes" ) return loc_descriptor
def growth ( interval , pricecol , eqdata ) : """Retrieve growth labels . Parameters interval : int Number of sessions over which growth is measured . For example , if the value of 32 is passed for ` interval ` , the data returned will show the growth 32 sessions ahead for each data point . eqdata : Dat...
size = len ( eqdata . index ) labeldata = eqdata . loc [ : , pricecol ] . values [ interval : ] / eqdata . loc [ : , pricecol ] . values [ : ( size - interval ) ] df = pd . DataFrame ( data = labeldata , index = eqdata . index [ : ( size - interval ) ] , columns = [ 'Growth' ] , dtype = 'float64' ) return df
def add_reserved_switch_binding ( switch_ip , state ) : """Add a reserved switch binding ."""
# overload port _ id to contain switch state add_nexusport_binding ( state , const . NO_VLAN_OR_VNI_ID , const . NO_VLAN_OR_VNI_ID , switch_ip , const . RESERVED_NEXUS_SWITCH_DEVICE_ID_R1 )
def prj_create_user ( self , * args , ** kwargs ) : """Create a new project : returns : None : rtype : None : raises : None"""
if not self . cur_prj : return user = self . create_user ( projects = [ self . cur_prj ] ) if user : userdata = djitemdata . UserItemData ( user ) treemodel . TreeItem ( userdata , self . prj_user_model . root )
def chmod_plus_x ( path ) : """Equivalent of unix ` chmod a + x path `"""
path_mode = os . stat ( path ) . st_mode path_mode &= int ( '777' , 8 ) if path_mode & stat . S_IRUSR : path_mode |= stat . S_IXUSR if path_mode & stat . S_IRGRP : path_mode |= stat . S_IXGRP if path_mode & stat . S_IROTH : path_mode |= stat . S_IXOTH os . chmod ( path , path_mode )
def to_dict ( self ) : """Returns a dict representation of this instance suitable for conversion to YAML ."""
return { 'model_type' : 'segmented_discretechoice' , 'name' : self . name , 'segmentation_col' : self . segmentation_col , 'sample_size' : self . sample_size , 'probability_mode' : self . probability_mode , 'choice_mode' : self . choice_mode , 'choosers_fit_filters' : self . choosers_fit_filters , 'choosers_predict_fil...
def get_halfs_double ( self , vertex_a1 , vertex_b1 , vertex_a2 , vertex_b2 ) : """Compute the two parts separated by ` ` ( vertex _ a1 , vertex _ b1 ) ` ` and ` ` ( vertex _ a2 , vertex _ b2 ) ` ` Raise a GraphError when ` ` ( vertex _ a1 , vertex _ b1 ) ` ` and ` ` ( vertex _ a2 , vertex _ b2 ) ` ` do not sep...
if vertex_a1 not in self . neighbors [ vertex_b1 ] : raise GraphError ( "vertex_a1 must be a neighbor of vertex_b1." ) if vertex_a2 not in self . neighbors [ vertex_b2 ] : raise GraphError ( "vertex_a2 must be a neighbor of vertex_b2." ) # find vertex _ a _ part ( and possibly switch vertex _ a2 , vertex _ b2) ...
def random_dimer ( molecule0 , molecule1 , thresholds , shoot_max ) : """Create a random dimer . molecule0 and molecule1 are placed in one reference frame at random relative positions . Interatomic distances are above the thresholds . Initially a dimer is created where one interatomic distance approximates ...
# apply a random rotation to molecule1 center = np . zeros ( 3 , float ) angle = np . random . uniform ( 0 , 2 * np . pi ) axis = random_unit ( ) rotation = Complete . about_axis ( center , angle , axis ) cor1 = np . dot ( molecule1 . coordinates , rotation . r ) # select a random atom in each molecule atom0 = np . ran...
def split_term ( cls , term ) : """Split a term in to parent and record term components : param term : combined term text : return : Tuple of parent and record term"""
if '.' in term : parent_term , record_term = term . split ( '.' ) parent_term , record_term = parent_term . strip ( ) , record_term . strip ( ) if parent_term == '' : parent_term = ELIDED_TERM else : parent_term , record_term = ROOT_TERM , term . strip ( ) return parent_term , record_term
def query ( botcust2 , message ) : """Sends a message to Mitsuku and retrieves the reply Args : botcust2 ( str ) : The botcust2 identifier message ( str ) : The message to send to Mitsuku Returns : reply ( str ) : The message Mitsuku sent back"""
logger . debug ( "Getting Mitsuku reply" ) # Set up http request packages params = { 'botid' : 'f6a012073e345a08' , 'amp;skin' : 'chat' } headers = { 'Accept-Encoding' : 'gzip, deflate, br' , 'Accept-Language' : 'en-US,en;q=0.8' , 'Cache-Control' : 'max-age=0' , 'Connection' : 'keep-alive' , 'Content-Length' : str ( le...
def format_stack_trace_json ( self ) : """Convert a StackTrace object to json format ."""
stack_trace_json = { } if self . stack_frames : stack_trace_json [ 'stack_frames' ] = { 'frame' : self . stack_frames , 'dropped_frames_count' : self . dropped_frames_count } stack_trace_json [ 'stack_trace_hash_id' ] = self . stack_trace_hash_id return stack_trace_json
def copy_to_file ( self , name , fp_dest , callback = None ) : """Write cur _ dir / name to file - like ` fp _ dest ` . Args : name ( str ) : file name , located in self . curdir fp _ dest ( file - like ) : must support write ( ) method callback ( function , optional ) : Called like ` func ( buf ) ` for e...
assert compat . is_native ( name ) def _write_to_file ( data ) : # print ( " _ write _ to _ file ( ) { } bytes . " . format ( len ( data ) ) ) fp_dest . write ( data ) if callback : callback ( data ) self . ftp . retrbinary ( "RETR {}" . format ( name ) , _write_to_file , FtpTarget . DEFAULT_BLOCKSIZE )
def verification_events ( self ) : """Events related to command verification . : type : List [ : class : ` . CommandHistoryEvent ` ]"""
queued = self . _assemble_event ( 'Verifier_Queued' ) started = self . _assemble_event ( 'Verifier_Started' ) return [ x for x in [ queued , started ] if x ]
def merge ( self , graph , witness_sigil , witness_tokens , alignments = { } ) : """: type graph : VariantGraph"""
# NOTE : token _ to _ vertex only contains newly generated vertices token_to_vertex = { } last = graph . start for token in witness_tokens : vertex = alignments . get ( token , None ) if not vertex : vertex = graph . add_vertex ( token , witness_sigil ) token_to_vertex [ token ] = vertex els...
def log_pdf ( self , y , mu , weights = None ) : """computes the log of the pdf or pmf of the values under the current distribution Parameters y : array - like of length n target values mu : array - like of length n expected values weights : array - like shape ( n , ) or None , default : None sample w...
if weights is None : weights = np . ones_like ( mu ) scale = self . scale / weights return sp . stats . norm . logpdf ( y , loc = mu , scale = scale )
def from_internal ( self , attribute_profile , internal_dict ) : """Converts the internal data to " type " : type attribute _ profile : str : type internal _ dict : dict [ str , str ] : rtype : dict [ str , str ] : param attribute _ profile : To which external type to convert ( ex : oidc , saml , . . . ) ...
external_dict = { } for internal_attribute_name in internal_dict : try : attribute_mapping = self . from_internal_attributes [ internal_attribute_name ] except KeyError : logger . debug ( "no attribute mapping found for the internal attribute '%s'" , internal_attribute_name ) continue ...
def weekdays ( start , end ) : """Returns the number of weekdays between the inputted start and end dates . This would be the equivalent of doing ( end - start ) to get the number of calendar days between the two dates . : param start | < datetime . date > end | < datetime . date > : return < int >"""
# don ' t bother calculating anything for the same inputted date if start == end : return int ( start . isoweekday ( ) not in ( 6 , 7 ) ) elif end < start : return - weekdays ( end , start ) else : strt_weekday = start . isoweekday ( ) end_weekday = end . isoweekday ( ) # calculate in the positive d...
def getDescsV2 ( flags , fs_list = ( ) , hs_list = ( ) , ss_list = ( ) , os_list = ( ) ) : """Return a FunctionFS descriptor suitable for serialisation . flags ( int ) Any combination of VIRTUAL _ ADDR , EVENTFD , ALL _ CTRL _ RECIP , CONFIG0 _ SETUP . { fs , hs , ss , os } _ list ( list of descriptors ) ...
count_field_list = [ ] descr_field_list = [ ] kw = { } for descriptor_list , flag , prefix , allowed_descriptor_klass in ( ( fs_list , HAS_FS_DESC , 'fs' , USBDescriptorHeader ) , ( hs_list , HAS_HS_DESC , 'hs' , USBDescriptorHeader ) , ( ss_list , HAS_SS_DESC , 'ss' , USBDescriptorHeader ) , ( os_list , HAS_MS_OS_DESC...
def make_plot ( self ) : """This method creates the waterfall plot ."""
# sets levels of main contour plot colors1 = [ 'None' , 'darkblue' , 'blue' , 'deepskyblue' , 'aqua' , 'greenyellow' , 'orange' , 'red' , 'darkred' ] if len ( self . contour_vals ) > len ( colors1 ) + 1 : raise AttributeError ( "Reduce number of contours." ) # produce filled contour of SNR sc = self . axis . contou...
def from_vega ( cls , ** kwargs ) : """Load : ref : ` Vega spectrum < synphot - vega - spec > ` . Parameters kwargs : dict Keywords acceptable by : func : ` ~ synphot . specio . read _ remote _ spec ` . Returns vegaspec : ` SourceSpectrum ` Empirical Vega spectrum ."""
filename = conf . vega_file header , wavelengths , fluxes = specio . read_remote_spec ( filename , ** kwargs ) header [ 'filename' ] = filename meta = { 'header' : header , 'expr' : 'Vega from {0}' . format ( os . path . basename ( filename ) ) } return cls ( Empirical1D , points = wavelengths , lookup_table = fluxes ,...
def display_reports ( self , layout ) : """Issues the final PyLint score as a TeamCity build statistic value"""
try : score = self . linter . stats [ 'global_note' ] except ( AttributeError , KeyError ) : pass else : self . tc . message ( 'buildStatisticValue' , key = 'PyLintScore' , value = str ( score ) )
def passthrough_device ( self , name , controller_port , device , passthrough ) : """Sets the passthrough mode of an existing DVD device . Changing the setting while the VM is running is forbidden . The setting is only used if at VM start the device is configured as a host DVD drive , in all other cases it is...
if not isinstance ( name , basestring ) : raise TypeError ( "name can only be an instance of type basestring" ) if not isinstance ( controller_port , baseinteger ) : raise TypeError ( "controller_port can only be an instance of type baseinteger" ) if not isinstance ( device , baseinteger ) : raise TypeError...
def get_hierarchy_design_session ( self , proxy ) : """Gets the ` ` OsidSession ` ` associated with the hierarchy design service . arg : proxy ( osid . proxy . Proxy ) : a proxy return : ( osid . hierarchy . HierarchyDesignSession ) - a ` ` HierarchyDesignSession ` ` raise : NullArgument - ` ` proxy ` ` is ...
if not self . supports_hierarchy_design ( ) : raise errors . Unimplemented ( ) # pylint : disable = no - member return sessions . HierarchyDesignSession ( proxy = proxy , runtime = self . _runtime )
def _resolve_to_func ( self , what ) : """This method resolves whatever is passed : a string , a bound or unbound method , a function , to make it a function . This makes internal handling of setter and getter uniform and easier ."""
if isinstance ( what , str ) : what = getattr ( Adapter . _get_property ( self ) , what ) # makes it an unbounded function if needed if type ( what ) == types . MethodType : what = what . __func__ if not type ( what ) == types . FunctionType : raise TypeError ( "Expected a method name, a method or a functio...
def make_button_widget ( cls , label , file_path = None , handler = None , style = None , layout = Layout ( width = 'auto' ) ) : "Return a Button widget with specified ` handler ` ."
btn = widgets . Button ( description = label , layout = layout ) if handler is not None : btn . on_click ( handler ) if style is not None : btn . button_style = style btn . file_path = file_path btn . flagged_for_delete = False return btn
def _estimateCubicCurveLength ( pt0 , pt1 , pt2 , pt3 , precision = 10 ) : """Estimate the length of this curve by iterating through it and averaging the length of the flat bits ."""
points = [ ] length = 0 step = 1.0 / precision factors = range ( 0 , precision + 1 ) for i in factors : points . append ( _getCubicPoint ( i * step , pt0 , pt1 , pt2 , pt3 ) ) for i in range ( len ( points ) - 1 ) : pta = points [ i ] ptb = points [ i + 1 ] length += _distance ( pta , ptb ) return lengt...
def pool_process ( func , iterable , process_name = 'Pool processing' , cpus = cpu_count ( ) ) : """Apply a function to each element in an iterable and return a result list . : param func : A function that returns a value : param iterable : A list or set of elements to be passed to the func as the singular para...
with Timer ( '\t{0} ({1}) completed in' . format ( process_name , str ( func ) ) ) : pool = Pool ( cpus ) vals = pool . map ( func , iterable ) pool . close ( ) return vals
def verify_submit ( session , queue_url , log_url , job_ids , timeout = _DEFAULT_TIMEOUT , delay = _DEFAULT_DELAY , ** kwargs ) : """Verifies that the results were successfully submitted ."""
verification_queue = get_queue_obj ( session = session , queue_url = queue_url , log_url = log_url ) return verification_queue . verify_submit ( job_ids , timeout , delay , ** kwargs )
def make_heading_authors ( self , authors ) : """Constructs the Authors content for the Heading . This should display directly after the Article Title . Metadata element , content derived from FrontMatter"""
author_element = etree . Element ( 'h3' , { 'class' : 'authors' } ) # Construct content for the author element first = True for author in authors : if first : first = False else : append_new_text ( author_element , ',' , join_str = '' ) collab = author . find ( 'collab' ) anon = author ....
def token ( self , adata , load ) : '''Determine if token auth is valid and yield the adata'''
try : token = self . loadauth . get_tok ( load [ 'token' ] ) except Exception as exc : log . error ( 'Exception occurred when generating auth token: %s' , exc ) yield { } if not token : log . warning ( 'Authentication failure of type "token" occurred.' ) yield { } for sub_auth in adata : for sub...
def add_layer2image ( grid2d , x_pos , y_pos , kernel , order = 1 ) : """adds a kernel on the grid2d image at position x _ pos , y _ pos with an interpolated subgrid pixel shift of order = order : param grid2d : 2d pixel grid ( i . e . image ) : param x _ pos : x - position center ( pixel coordinate ) of the la...
x_int = int ( round ( x_pos ) ) y_int = int ( round ( y_pos ) ) shift_x = x_int - x_pos shift_y = y_int - y_pos kernel_shifted = interp . shift ( kernel , [ - shift_y , - shift_x ] , order = order ) return add_layer2image_int ( grid2d , x_int , y_int , kernel_shifted )
def _linalg_cho_factor ( A , rho , lower = False , check_finite = True ) : """Patched version of : func : ` sporco . linalg . cho _ factor ` ."""
N , M = A . shape if N >= M : c , lwr = _cho_factor ( A . T . dot ( A ) + rho * cp . identity ( M , dtype = A . dtype ) , lower = lower , check_finite = check_finite ) else : c , lwr = _cho_factor ( A . dot ( A . T ) + rho * cp . identity ( N , dtype = A . dtype ) , lower = lower , check_finite = check_finite )...
def create ( self ) : """Create the subqueue to change the default behavior of Lock to semaphore ."""
self . queue = self . scheduler . queue . addSubQueue ( self . priority , LockEvent . createMatcher ( self . context , self . key ) , maxdefault = self . size , defaultQueueClass = CBQueue . AutoClassQueue . initHelper ( 'locker' , subqueuelimit = 1 ) )
def connect ( self , servers = [ "nats://127.0.0.1:4222" ] , loop = None , # ' io _ loop ' and ' loop ' are the same , but we have # both params to be consistent with asyncio client . io_loop = None , # Event Callbacks error_cb = None , disconnected_cb = None , reconnected_cb = None , closed_cb = None , # ' close _ cb ...
self . _setup_server_pool ( servers ) self . _loop = io_loop or loop or tornado . ioloop . IOLoop . current ( ) self . _error_cb = error_cb self . _closed_cb = closed_cb or close_cb self . _reconnected_cb = reconnected_cb self . _disconnected_cb = disconnected_cb self . _max_read_buffer_size = max_read_buffer_size self...
def add_log_entry ( self , entry ) : """: db . model . job record holds event log , that can be accessed by MX this method adds a record and removes oldest one if necessary"""
event_log = self . job_record . event_log if len ( event_log ) > job . MAX_NUMBER_OF_EVENTS : del event_log [ - 1 ] event_log . insert ( 0 , entry )
def has_value_of_type ( self , var_type ) : """Does the variable both have the given type and have a variable value we can use ?"""
if self . has_value ( ) and self . has_type ( var_type ) : return True return False
def __set_clear_button_visibility ( self , text ) : """Sets the clear button visibility . : param text : Current field text . : type text : QString"""
if text : self . __clear_button . show ( ) else : self . __clear_button . hide ( )
def main ( argv = None ) : """Takes crash data via args and generates a Socorro signature"""
parser = argparse . ArgumentParser ( description = DESCRIPTION , epilog = EPILOG ) parser . add_argument ( '-v' , '--verbose' , help = 'increase output verbosity' , action = 'store_true' ) parser . add_argument ( '--format' , help = 'specify output format: csv, text (default)' ) parser . add_argument ( '--different-onl...
def position_target_global_int_send ( self , time_boot_ms , coordinate_frame , type_mask , lat_int , lon_int , alt , vx , vy , vz , afx , afy , afz , yaw , yaw_rate , force_mavlink1 = False ) : '''Reports the current commanded vehicle position , velocity , and acceleration as specified by the autopilot . This s...
return self . send ( self . position_target_global_int_encode ( time_boot_ms , coordinate_frame , type_mask , lat_int , lon_int , alt , vx , vy , vz , afx , afy , afz , yaw , yaw_rate ) , force_mavlink1 = force_mavlink1 )
def get_command_templates ( command_tokens , file_tokens = [ ] , path_tokens = [ ] , job_options = [ ] ) : """Given a list of tokens from the grammar , return a list of commands ."""
files = get_files ( file_tokens ) paths = get_paths ( path_tokens ) job_options = get_options ( job_options ) templates = _get_command_templates ( command_tokens , files , paths , job_options ) for command_template in templates : command_template . _dependencies = _get_prelim_dependencies ( command_template , templ...
def select ( * cases ) : """Select the first case that becomes ready . If a default case ( : class : ` goless . dcase ` ) is present , return that if no other cases are ready . If there is no default case and no case is ready , block until one becomes ready . See Go ' s ` ` reflect . Select ` ` method for...
if len ( cases ) == 0 : return # If the first argument is a list , it should be the only argument if isinstance ( cases [ 0 ] , list ) : if len ( cases ) != 1 : raise TypeError ( 'Select can be called either with a list of cases ' 'or multiple case arguments, but not both.' ) cases = cases [ 0 ] ...
def convert_svc_catalog_endpoint_data_to_v3 ( self , ep_data ) : """Convert v2 endpoint data into v3. ' service _ name1 ' : [ ' adminURL ' : adminURL , ' id ' : id , ' region ' : region . ' publicURL ' : publicURL , ' internalURL ' : internalURL ' service _ name2 ' : [ ' adminURL ' : adminURL , ' ...
self . log . warn ( "Endpoint ID and Region ID validation is limited to not " "null checks after v2 to v3 conversion" ) for svc in ep_data . keys ( ) : assert len ( ep_data [ svc ] ) == 1 , "Unknown data format" svc_ep_data = ep_data [ svc ] [ 0 ] ep_data [ svc ] = [ { 'url' : svc_ep_data [ 'adminURL' ] , '...
def is_valid_endpoint ( url ) : """Just ensures the url has a scheme ( http / https ) , and a net location ( IP or domain name ) . Can make more advanced or do on - network tests if needed , but this is really just to catch obvious errors . > > > is _ valid _ endpoint ( " https : / / 34.216.72.29:6206 " ) Tru...
try : result = urlparse ( url ) if result . port : _port = int ( result . port ) return ( all ( [ result . scheme , result . netloc ] ) and result . scheme in [ 'http' , 'https' ] ) except ValueError : return False
def localize_shapefile ( shp_href , dirs ) : """Given a shapefile href and a set of directories , modify the shapefile name so it ' s correct with respect to the output and cache directories ."""
# support latest mapnik features of auto - detection # of image sizes and jpeg reading support . . . # http : / / trac . mapnik . org / ticket / 508 mapnik_requires_absolute_paths = ( MAPNIK_VERSION < 601 ) shp_href = urljoin ( dirs . source . rstrip ( '/' ) + '/' , shp_href ) scheme , host , path , p , q , f = urlpars...
def similar_objects ( self , num = None , ** filters ) : """Find similar objects using related tags ."""
tags = self . tags if not tags : return [ ] content_type = ContentType . objects . get_for_model ( self . __class__ ) filters [ 'content_type' ] = content_type # can ' t filter , see # - https : / / github . com / alex / django - taggit / issues / 32 # - https : / / django - taggit . readthedocs . io / en / latest ...
def nowarnings ( func ) : """Create a function wrapped in a context that ignores warnings ."""
@ functools . wraps ( func ) def new_func ( * args , ** kwargs ) : with warnings . catch_warnings ( ) : warnings . simplefilter ( 'ignore' ) return func ( * args , ** kwargs ) return new_func
def get_resource_url ( cls , resource , base_url ) : """Construct the URL for talking to this resource . i . e . : http : / / myapi . com / api / resource Note that this is NOT the method for calling individual instances i . e . http : / / myapi . com / api / resource / 1 Args : resource : The resource ...
if resource . Meta . resource_name : url = '{}/{}' . format ( base_url , resource . Meta . resource_name ) else : p = inflect . engine ( ) plural_name = p . plural ( resource . Meta . name . lower ( ) ) url = '{}/{}' . format ( base_url , plural_name ) return cls . _parse_url_and_validate ( url )
def immerkaer_local ( input , size , output = None , mode = "reflect" , cval = 0.0 ) : r"""Estimate the local noise . The input image is assumed to have additive zero mean Gaussian noise . The Immerkaer noise estimation is applied to the image locally over a N - dimensional cube of side - length size . The si...
output = _ni_support . _get_output ( output , input ) footprint = numpy . asarray ( [ 1 ] * size ) # build nd - kernel to acquire square root of sum of squared elements kernel = [ 1 , - 2 , 1 ] for _ in range ( input . ndim - 1 ) : kernel = numpy . tensordot ( kernel , [ 1 , - 2 , 1 ] , 0 ) divider = numpy . square...
def compile_timeoper ( rule ) : """Compiler helper method : attempt to compile constant into object representing datetime or timedelta object to enable relations and thus simple comparisons using Python operators ."""
if isinstance ( rule . value , ( datetime . datetime , datetime . timedelta ) ) : return rule if isinstance ( rule , NumberRule ) : return compile_timedelta ( rule ) if isinstance ( rule , ConstantRule ) : try : return compile_datetime ( rule ) except ValueError : pass try : ...
def dispatch ( self , request , * args , ** kwargs ) : """Does request processing for return _ url query parameter and redirects with it ' s missing We can ' t do that in the get method , as it does not exist in the View base class and child mixins implementing get do not call super ( ) . get"""
self . return_url = request . GET . get ( 'return_url' , None ) referrer = request . META . get ( 'HTTP_REFERER' , None ) # leave alone POST and ajax requests and if return _ url is explicitly left empty if ( request . method != "GET" or request . is_ajax ( ) or self . return_url or referrer is None or self . return_ur...
def newer_pairwise_group ( sources_groups , targets ) : """Walk both arguments in parallel , testing if each source group is newer than its corresponding target . Returns a pair of lists ( sources _ groups , targets ) where sources is newer than target , according to the semantics of ' newer _ group ( ) ' .""...
if len ( sources_groups ) != len ( targets ) : raise ValueError ( "'sources_group' and 'targets' must be the same length" ) # build a pair of lists ( sources _ groups , targets ) where source is newer n_sources = [ ] n_targets = [ ] for i in range ( len ( sources_groups ) ) : if newer_group ( sources_groups [ i...
def purge ( self , strategy = "klogn" , keep = None , deleteNonSnapshots = False , ** kwargs ) : """Purge snapshot directory of snapshots according to some strategy , preserving however a given " keep " list or set of snapshot numbers . Available strategies are : " lastk " : Keep last k snapshots ( Default : ...
assert ( isinstance ( keep , ( list , set ) ) or keep is None ) keep = set ( keep or [ ] ) if self . haveSnapshots : if strategy == "lastk" : keep . update ( self . strategyLastK ( self . latestSnapshotNum , ** kwargs ) ) elif strategy == "klogn" : keep . update ( self . strategyKLogN ( self . l...
def on_mouse ( self , event ) : '''implement dragging'''
# print ( ' on _ mouse ' ) if not event . Dragging ( ) : self . _dragPos = None return # self . CaptureMouse ( ) if not self . _dragPos : self . _dragPos = event . GetPosition ( ) else : pos = event . GetPosition ( ) displacement = self . _dragPos - pos self . SetPosition ( self . GetPosition ( ...
def _endCodeIfNeeded ( line , inCodeBlock ) : """Simple routine to append end code marker if needed ."""
assert isinstance ( line , str ) if inCodeBlock : line = '# @endcode{0}{1}' . format ( linesep , line . rstrip ( ) ) inCodeBlock = False return line , inCodeBlock
def writeObject ( self , obj , is_proxy = False ) : """Writes an object to the stream ."""
if self . use_proxies and not is_proxy : self . writeProxy ( obj ) return self . stream . write ( TYPE_OBJECT ) ref = self . context . getObjectReference ( obj ) if ref != - 1 : self . _writeInteger ( ref << 1 ) return self . context . addObject ( obj ) # object is not referenced , serialise it kls = ob...
def QA_fetch_user ( user_cookie , db = DATABASE ) : """get the user Arguments : user _ cookie : str the unique cookie _ id for a user Keyword Arguments : db : database for query Returns : list - - - [ ACCOUNT ]"""
collection = DATABASE . account return [ res for res in collection . find ( { 'user_cookie' : user_cookie } , { "_id" : 0 } ) ]
def remove_capability ( capability , image = None , restart = False ) : '''Uninstall a capability Args : capability ( str ) : The capability to be removed image ( Optional [ str ] ) : The path to the root directory of an offline Windows image . If ` None ` is passed , the running operating system is targe...
if salt . utils . versions . version_cmp ( __grains__ [ 'osversion' ] , '10' ) == - 1 : raise NotImplementedError ( '`uninstall_capability` is not available on this version of ' 'Windows: {0}' . format ( __grains__ [ 'osversion' ] ) ) cmd = [ 'DISM' , '/Quiet' , '/Image:{0}' . format ( image ) if image else '/Onlin...
def read ( path ) : """Read the contents of a LockFile . Arguments : path ( str ) : Path to lockfile . Returns : Tuple ( int , datetime ) : The integer PID of the lock owner , and the date the lock was required . If the lock is not claimed , both values are None ."""
if fs . exists ( path ) : with open ( path ) as infile : components = infile . read ( ) . split ( ) pid = int ( components [ 0 ] ) date = datetime . date . fromtimestamp ( float ( components [ 1 ] ) ) return pid , date else : return None , None
def expand_dir ( _dir , cwd = os . getcwd ( ) ) : """Return path with environmental variables and tilde ~ expanded . : param _ dir : : type _ dir : str : param cwd : current working dir ( for deciphering relative _ dir paths ) : type cwd : str : rtype ; str"""
_dir = os . path . expanduser ( os . path . expandvars ( _dir ) ) if not os . path . isabs ( _dir ) : _dir = os . path . normpath ( os . path . join ( cwd , _dir ) ) return _dir
def wait_until_complete ( job_list ) : """Args : Accepts a list of GPJob objects This method will not return until all GPJob objects in the list have finished running . That us , they are either complete and have resulted in an error state . This method will occasionally query each job to see if it is finis...
complete = [ False ] * len ( job_list ) wait = 1 while not all ( complete ) : time . sleep ( wait ) for i , job in enumerate ( job_list ) : if not complete [ i ] : complete [ i ] = job . is_finished ( ) if not complete [ i ] : break wait = min ( wait * 2 , 10 ...
def set_model ( model , tablename = None , created = None , appname = None , model_path = None ) : """Register an model and tablename to a global variable . model could be a string format , i . e . , ' uliweb . contrib . auth . models . User ' : param appname : if no appname , then archive according to model ...
if isinstance ( model , type ) and issubclass ( model , Model ) : # use alias first tablename = model . _alias or model . tablename tablename = tablename . lower ( ) # set global _ _ models _ _ d = __models__ . setdefault ( tablename , { } ) engines = d . get ( 'config' , { } ) . pop ( 'engines' , [ 'default' ] ) i...
def update ( self ) : """Update | KI1 | based on | EQI1 | and | TInd | . > > > from hydpy . models . lland import * > > > parameterstep ( ' 1d ' ) > > > eqi1(5.0) > > > tind . value = 10.0 > > > derived . ki1 . update ( ) > > > derived . ki1 ki1(50.0)"""
con = self . subpars . pars . control self ( con . eqi1 * con . tind )
def width_aware_slice ( self , index ) : """Slice based on the number of columns it would take to display the substring ."""
if wcswidth ( self . s ) == - 1 : raise ValueError ( 'bad values for width aware slicing' ) index = normalize_slice ( self . width , index ) counter = 0 parts = [ ] for chunk in self . chunks : if index . start < counter + chunk . width and index . stop > counter : start = max ( 0 , index . start - coun...
def add_bundle ( self , prov_bundle , identifier ) : """Verbose method of adding a bundle . Can also be done as : > > > api = Api ( ) > > > document = api . document . get ( 148) > > > document . bundles [ ' identifier ' ] = prov _ bundle : param prov _ bundle : The bundle to be added : param str identi...
if self . abstract : raise AbstractDocumentException ( ) self . _api . add_bundle ( self . id , prov_bundle . serialize ( ) , identifier )
def seq_2_StdDoubleVector ( seq , vec = None ) : """Converts a python sequence < float > object to a : class : ` tango . StdDoubleVector ` : param seq : the sequence of floats : type seq : sequence < : py : obj : ` float ` > : param vec : ( optional , default is None ) an : class : ` tango . StdDoubleVector `...
if vec is None : if isinstance ( seq , StdDoubleVector ) : return seq vec = StdDoubleVector ( ) if not isinstance ( vec , StdDoubleVector ) : raise TypeError ( 'vec must be a tango.StdDoubleVector' ) for e in seq : vec . append ( str ( e ) ) return vec
def time_coef ( tc , nc , tb , nb ) : """Return time coefficient relative to base numbers . @ param tc : current test time @ param nc : current test data size @ param tb : base test time @ param nb : base test data size @ return : time coef ."""
tc = float ( tc ) nc = float ( nc ) tb = float ( tb ) nb = float ( nb ) q = ( tc * nb ) / ( tb * nc ) return q
def install_virtualbox ( distribution , force_setup = False ) : """install virtualbox"""
if 'ubuntu' in distribution : with hide ( 'running' , 'stdout' ) : sudo ( 'DEBIAN_FRONTEND=noninteractive apt-get update' ) sudo ( "sudo DEBIAN_FRONTEND=noninteractive apt-get -y -o " "Dpkg::Options::='--force-confdef' " "-o Dpkg::Options::='--force-confold' upgrade --force-yes" ) install_ub...
def pad_sequences ( self , sequences , fixed_sentences_seq_length = None , fixed_token_seq_length = None , padding = 'pre' , truncating = 'post' , padding_token = "<PAD>" ) : """Pads each sequence to the same fixed length ( length of the longest sequence or provided override ) . Args : sequences : list of list ...
value = self . special_token . index ( padding_token ) if value < 0 : raise ValueError ( 'The padding token "' + padding_token + " is not in the special tokens of the tokenizer." ) # Determine if input is ( samples , max _ sentences , max _ tokens ) or not . if isinstance ( sequences [ 0 ] [ 0 ] , list ) : x = ...
def run_bots ( bots ) : """Run many bots in parallel . : param bots : IRC bots to run . : type bots : list"""
greenlets = [ spawn ( bot . run ) for bot in bots ] try : joinall ( greenlets ) except KeyboardInterrupt : for bot in bots : bot . disconnect ( ) finally : killall ( greenlets )