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def view ( self , start , end , max_items = None , * args , ** kwargs ) : """Implements the CalendarView option to FindItem . The difference between filter ( ) and view ( ) is that filter ( ) only returns the master CalendarItem for recurring items , while view ( ) unfolds recurring items and returns all Calend...
qs = QuerySet ( self ) . filter ( * args , ** kwargs ) qs . calendar_view = CalendarView ( start = start , end = end , max_items = max_items ) return qs
def load_from_file ( path , fmt = None , is_training = True ) : '''load data from file'''
if fmt is None : fmt = 'squad' assert fmt in [ 'squad' , 'csv' ] , 'input format must be squad or csv' qp_pairs = [ ] if fmt == 'squad' : with open ( path ) as data_file : data = json . load ( data_file ) [ 'data' ] for doc in data : for paragraph in doc [ 'paragraphs' ] : ...
def _enumerate_directions ( x ) : """For an n - dimensional tensor , returns tensors to enumerate each axis . > > > x = np . zeros ( [ 2 , 3 , 4 ] ) # or any other tensor > > > i , j , k = _ enumerate _ directions ( x ) > > > result = i + 2 * j + 3 * k result [ i , j , k ] = i + 2 * j + 3 * k , and also has...
backend = get_backend ( x ) shape = backend . shape ( x ) result = [ ] for axis_id , axis_length in enumerate ( shape ) : shape = [ 1 ] * len ( shape ) shape [ axis_id ] = axis_length result . append ( backend . reshape ( backend . arange ( 0 , axis_length ) , shape ) ) return result
def get_trans_reg ( self , name : Text , default : Any = None ) -> Any : """Convenience function to access the transition register of a specific kind . : param name : Name of the register you want to see : param default : What to return by default"""
tr = self . register . get ( Register . TRANSITION , { } ) return tr . get ( name , default )
def bind ( self , instance , auto = False ) : """Bind deps to instance : param instance : : param auto : follow update of DI and refresh binds once we will get something new : return :"""
methods = [ ( m , cls . __dict__ [ m ] ) for cls in inspect . getmro ( type ( instance ) ) for m in cls . __dict__ if inspect . isfunction ( cls . __dict__ [ m ] ) ] try : deps_of_endpoints = [ ( method_ptr , self . entrypoint_deps ( method_ptr ) ) for ( method_name , method_ptr ) in methods ] for ( method_ptr ...
def get_persistent_items ( self ) : """Returns attached container items and container configurations that are marked as persistent . Each returned item is in the format ` ` ( config name , instance / attached name ) ` ` , where the instance name can also be ` ` None ` ` . : return : Lists of attached items . ...
attached_items = [ ( container , ac ) for container , config in self for ac in config . attaches ] persistent_containers = [ ( container , ci ) for container , config in self if config . persistent for ci in config . instances or [ None ] ] return attached_items , persistent_containers
def X ( self , i , j = slice ( None , None , None ) ) : '''Computes the design matrix at the given * PLD * order and the given indices . The columns are the * PLD * vectors for the target at the corresponding order , computed as the product of the fractional pixel flux of all sets of : py : obj : ` n ` pixels...
X1 = self . fpix [ j ] / self . norm [ j ] . reshape ( - 1 , 1 ) X = np . product ( list ( multichoose ( X1 . T , i + 1 ) ) , axis = 1 ) . T if self . X1N is not None : return np . hstack ( [ X , self . X1N [ j ] ** ( i + 1 ) ] ) else : return X
def create ( zpool , * vdevs , ** kwargs ) : '''. . versionadded : : 2015.5.0 Create a simple zpool , a mirrored zpool , a zpool having nested VDEVs , a hybrid zpool with cache , spare and log drives or a zpool with RAIDZ - 1 , RAIDZ - 2 or RAIDZ - 3 zpool : string Name of storage pool vdevs : string One ...
# # Configure pool # NOTE : initialize the defaults flags = [ ] opts = { } target = [ ] # NOTE : push pool and filesystem properties pool_properties = kwargs . get ( 'properties' , { } ) filesystem_properties = kwargs . get ( 'filesystem_properties' , { } ) # NOTE : set extra config based on kwargs if kwargs . get ( 'f...
def disable_process_breakpoints ( self , dwProcessId ) : """Disables all breakpoints for the given process . @ type dwProcessId : int @ param dwProcessId : Process global ID ."""
# disable code breakpoints for bp in self . get_process_code_breakpoints ( dwProcessId ) : self . disable_code_breakpoint ( dwProcessId , bp . get_address ( ) ) # disable page breakpoints for bp in self . get_process_page_breakpoints ( dwProcessId ) : self . disable_page_breakpoint ( dwProcessId , bp . get_addr...
def request ( self , method , * , path = None , json = None , params = None , headers = None , timeout = None , backoff_cap = None , ** kwargs ) : """Performs an HTTP request with the given parameters . Implements exponential backoff . If ` ConnectionError ` occurs , a timestamp equal to now + the default del...
backoff_timedelta = self . get_backoff_timedelta ( ) if timeout is not None and timeout < backoff_timedelta : raise TimeoutError if backoff_timedelta > 0 : time . sleep ( backoff_timedelta ) connExc = None timeout = timeout if timeout is None else timeout - backoff_timedelta try : response = self . _request...
def action_delete ( self , ids ) : """Delete selected sessions ."""
is_current = any ( SessionActivity . is_current ( sid_s = id_ ) for id_ in ids ) if is_current : flash ( 'You could not remove your current session' , 'error' ) return for id_ in ids : delete_session ( sid_s = id_ ) db . session . commit ( )
def separated ( p , sep , mint , maxt = None , end = None ) : '''Repeat a parser ` p ` separated by ` s ` between ` mint ` and ` maxt ` times . When ` end ` is None , a trailing separator is optional . When ` end ` is True , a trailing separator is required . When ` end ` is False , a trailing separator is no...
maxt = maxt if maxt else mint @ Parser def sep_parser ( text , index ) : cnt , values , res = 0 , Value . success ( index , [ ] ) , None while cnt < maxt : if end in [ False , None ] and cnt > 0 : res = sep ( text , index ) if res . status : # ` sep ` found , consume it ( advance...
def _F ( self , X ) : """analytic solution of the projection integral : param x : R / Rs : type x : float > 0"""
if isinstance ( X , int ) or isinstance ( X , float ) : if X < 1 and X > 0 : a = 1 / ( X ** 2 - 1 ) * ( 1 - 2 / np . sqrt ( 1 - X ** 2 ) * np . arctanh ( np . sqrt ( ( 1 - X ) / ( 1 + X ) ) ) ) elif X == 1 : a = 1. / 3 elif X > 1 : a = 1 / ( X ** 2 - 1 ) * ( 1 - 2 / np . sqrt ( X ** ...
def pretty ( self ) : '''Return a string like ' / foo / bar . py : 230 in foo . bar . my _ func ' .'''
return '{}:{} in {}.{}' . format ( self . filename , self . line_number , self . module_name , self . function_name )
def key_absent ( name , use_32bit_registry = False ) : r'''. . versionadded : : 2015.5.4 Ensure a registry key is removed . This will remove the key , subkeys , and all value entries . Args : name ( str ) : A string representing the full path to the key to be removed to include the hive and the keypath ...
ret = { 'name' : name , 'result' : True , 'changes' : { } , 'comment' : '' } hive , key = _parse_key ( name ) # Determine what to do if not __utils__ [ 'reg.read_value' ] ( hive = hive , key = key , use_32bit_registry = use_32bit_registry ) [ 'success' ] : ret [ 'comment' ] = '{0} is already absent' . format ( name...
def despike ( self , window_length = 33 , samples = True , z = 2 ) : """Args : window ( int ) : window length in samples . Default 33 ( or 5 m for most curves sampled at 0.1524 m intervals ) . samples ( bool ) : window length is in samples . Use False for a window length given in metres . z ( float ) : Z ...
window_length //= 1 if samples else self . step z *= np . nanstd ( self ) # Transform to curve ' s units curve_sm = self . _rolling_window ( window_length , np . median ) spikes = np . where ( np . nan_to_num ( self - curve_sm ) > z ) [ 0 ] spukes = np . where ( np . nan_to_num ( curve_sm - self ) > z ) [ 0 ] out = np ...
def get_date ( context , value ) : """Tries to return a DateTime . DateTime object"""
if not value : return None if isinstance ( value , DateTime ) : return value if isinstance ( value , datetime ) : return dt2DT ( value ) if not isinstance ( value , basestring ) : return None def try_parse ( date_string , format ) : if not format : return None try : struct_time =...
def plot_kmf ( df , condition_col , censor_col , survival_col , strata_col = None , threshold = None , title = None , xlabel = None , ylabel = None , ax = None , with_condition_color = "#B38600" , no_condition_color = "#A941AC" , with_condition_label = None , no_condition_label = None , color_map = None , label_map = N...
# set reasonable default threshold value depending on type of condition _ col if threshold is None : if df [ condition_col ] . dtype != "bool" and np . issubdtype ( df [ condition_col ] . dtype , np . number ) : threshold = "median" # check inputs for threshold for validity elif isinstance ( threshold , num...
def dtype ( self ) : """Pixel data type ."""
pixels_group = self . label [ 'IsisCube' ] [ 'Core' ] [ 'Pixels' ] byte_order = self . BYTE_ORDERS [ pixels_group [ 'ByteOrder' ] ] pixel_type = self . PIXEL_TYPES [ pixels_group [ 'Type' ] ] return pixel_type . newbyteorder ( byte_order )
def _gettables ( self ) : """Return a list of hdf5 tables name PyMCsamples ."""
groups = self . _h5file . list_nodes ( "/" ) if len ( groups ) == 0 : return [ ] else : return [ gr . PyMCsamples for gr in groups if gr . _v_name [ : 5 ] == 'chain' ]
def _load_texture ( file_name , resolver ) : """Load a texture from a file into a PIL image ."""
file_data = resolver . get ( file_name ) image = PIL . Image . open ( util . wrap_as_stream ( file_data ) ) return image
def upload ( state , host , hostname , filename , remote_filename = None , use_remote_sudo = False , ssh_keyscan = False , ssh_user = None , ) : '''Upload files to other servers using ` ` scp ` ` . + hostname : hostname to upload to + filename : file to upload + remote _ filename : where to upload the file to...
remote_filename = remote_filename or filename # Figure out where we ' re connecting ( host or user @ host ) connection_target = hostname if ssh_user : connection_target = '@' . join ( ( ssh_user , hostname ) ) if ssh_keyscan : yield keyscan ( state , host , hostname ) # If we ' re not using sudo on the remote s...
def norm_int_dict ( int_dict ) : """Normalizes values in the given dict with int values . Parameters int _ dict : list A dict object mapping each key to an int value . Returns dict A dict where each key is mapped to its relative part in the sum of all dict values . Example > > > dict _ obj = { ' a...
norm_dict = int_dict . copy ( ) val_sum = sum ( norm_dict . values ( ) ) for key in norm_dict : norm_dict [ key ] = norm_dict [ key ] / val_sum return norm_dict
def _AbandonInactiveProcessingTasks ( self ) : """Marks processing tasks that exceed the inactive time as abandoned . This method does not lock the manager and should be called by a method holding the manager lock ."""
if self . _tasks_processing : inactive_time = time . time ( ) - self . _TASK_INACTIVE_TIME inactive_time = int ( inactive_time * definitions . MICROSECONDS_PER_SECOND ) # Abandon all tasks after they ' re identified so as not to modify the # dict while iterating over it . tasks_to_abandon = [ ] ...
def on_KeyPress ( self , event ) : '''To adjust the distance between pitch markers .'''
if event . GetKeyCode ( ) == wx . WXK_UP : self . dist10deg += 0.1 print ( 'Dist per 10 deg: %.1f' % self . dist10deg ) elif event . GetKeyCode ( ) == wx . WXK_DOWN : self . dist10deg -= 0.1 if self . dist10deg <= 0 : self . dist10deg = 0.1 print ( 'Dist per 10 deg: %.1f' % self . dist10deg ...
def ajax ( authenticated = True , data_required = False , json_encoder = json . JSONEncoder ) : """Decorator to allow the wrappered view to exist in an AJAX environment . Provide a decorator to wrap a view method so that it may exist in an entirely AJAX environment : - data decoded from JSON as input and data...
def decorator ( function , authenticated = authenticated , data_required = data_required ) : @ functools . wraps ( function , assigned = decorators . available_attrs ( function ) ) def _wrapped ( self , request , * args , ** kw ) : if authenticated and not request . user . is_authenticated : ...
def get_changelog ( repo_path , from_commit = None ) : """Given a repo path and an option commit / tag / refspec to start from , will get the rpm compatible changelog Args : repo _ path ( str ) : path to the git repo from _ commit ( str ) : refspec ( partial commit hash , tag , branch , full refspec , par...
repo = dulwich . repo . Repo ( repo_path ) tags = get_tags ( repo ) refs = get_refs ( repo ) changelog = [ ] maj_version = 0 feat_version = 0 fix_version = 0 start_including = False cur_line = '' if from_commit is None : start_including = True for commit_sha , children in reversed ( get_children_per_first_parent ( ...
def placeholder_plugin_filter ( self , request , queryset ) : """This is only used on models which use placeholders from the django - cms"""
if not request : return queryset if GLL . is_active : return queryset . filter ( language = GLL . language_code ) return queryset
def _iter_convert_to_object ( self , iterable ) : """Iterable yields tuples of ( binsha , mode , name ) , which will be converted to the respective object representation"""
for binsha , mode , name in iterable : path = join_path ( self . path , name ) try : yield self . _map_id_to_type [ mode >> 12 ] ( self . repo , binsha , mode , path ) except KeyError : raise TypeError ( "Unknown mode %o found in tree data for path '%s'" % ( mode , path ) )
def scramble_string ( s , key ) : """s is the puzzle ' s solution in column - major order , omitting black squares : i . e . if the puzzle is : C A T solution is CATAR Key is a 4 - digit number in the range 1000 < = key < = 9999"""
key = key_digits ( key ) for k in key : # foreach digit in the key s = shift ( s , key ) # for each char by each digit in the key in sequence s = s [ k : ] + s [ : k ] # cut the sequence around the key digit s = shuffle ( s ) # do a 1:1 shuffle of the ' deck ' return s
def full_travel_count ( self ) : """Returns the number of tacho counts in the full travel of the motor . When combined with the ` count _ per _ m ` atribute , you can use this value to calculate the maximum travel distance of the motor . ( linear motors only )"""
( self . _full_travel_count , value ) = self . get_cached_attr_int ( self . _full_travel_count , 'full_travel_count' ) return value
def _kbos_from_survey_sym_model_input_file ( model_file ) : """Load a Survey Simulator model file as an array of ephem EllipticalBody objects . @ param model _ file : @ return :"""
lines = storage . open_vos_or_local ( model_file ) . read ( ) . split ( '\n' ) kbos = [ ] for line in lines : if len ( line ) == 0 or line [ 0 ] == '#' : # skip initial column descriptors and the final blank line continue kbo = ephem . EllipticalBody ( ) values = line . split ( ) kbo . name = va...
def _initialize ( self , show_bounds , reset_camera , outline ) : """Outlines the input dataset and sets up the scene"""
self . plotter . subplot ( * self . loc ) if outline is None : self . plotter . add_mesh ( self . input_dataset . outline_corners ( ) , reset_camera = False , color = vtki . rcParams [ 'outline_color' ] , loc = self . loc ) elif outline : self . plotter . add_mesh ( self . input_dataset . outline ( ) , reset_ca...
def mutate ( self , p_mutate ) : """Simulate mutation against a probability . p _ mutate : probability for mutation to occur"""
new_dna = [ ] for bit in self . dna : if random . random ( ) < p_mutate : new_bit = bit while new_bit == bit : new_bit = random . choice ( self . GENETIC_MATERIAL_OPTIONS ) bit = new_bit new_dna . append ( bit ) self . dna = '' . join ( new_dna )
def import_locations ( self , zone_file ) : """Parse zoneinfo zone description data files . ` ` import _ locations ( ) ` ` returns a list of : class : ` Zone ` objects . It expects data files in one of the following formats : : AN + 1211-06900America / Curacao AO - 0848 + 01314Africa / Luanda AQ - 7750 + ...
self . _zone_file = zone_file field_names = ( 'country' , 'location' , 'zone' , 'comments' ) data = utils . prepare_csv_read ( zone_file , field_names , delimiter = r" " ) for row in ( x for x in data if not x [ 'country' ] . startswith ( '#' ) ) : if row [ 'comments' ] : row [ 'comments' ] = row [ 'comment...
def checar ( cliente_sat ) : """Checa em sequência os alertas registrados ( veja : func : ` registrar ` ) contra os dados da consulta ao status operacional do equipamento SAT . Este método irá então resultar em uma lista dos alertas ativos . : param cliente _ sat : Uma instância de : class : ` satcfe ....
resposta = cliente_sat . consultar_status_operacional ( ) alertas = [ ] for classe_alerta in AlertaOperacao . alertas_registrados : alerta = classe_alerta ( resposta ) if alerta . checar ( ) : alertas . append ( alerta ) return alertas
def create ( vm_ ) : '''Create a single VM from a data dict CLI Example : . . code - block : : bash salt - cloud - p proxmox - ubuntu vmhostname'''
try : # Check for required profile parameters before sending any API calls . if vm_ [ 'profile' ] and config . is_profile_configured ( __opts__ , __active_provider_name__ or 'proxmox' , vm_ [ 'profile' ] , vm_ = vm_ ) is False : return False except AttributeError : pass ret = { } __utils__ [ 'cloud.fire...
def get_host ( self , endpoint_or_address ) : """Find a host in the metadata for a specific endpoint . If a string inet address is passed , iterate all hosts to match the : attr : ` ~ . pool . Host . broadcast _ rpc _ address ` attribute ."""
if not isinstance ( endpoint_or_address , EndPoint ) : return self . _get_host_by_address ( endpoint_or_address ) return self . _hosts . get ( endpoint_or_address )
def send_message ( self , message , sign = True ) : """Send the given message to the connection . @ type message : OmapiMessage @ param sign : whether the message needs to be signed @ raises OmapiError : @ raises socket . error :"""
if sign : message . sign ( self . authenticators [ self . defauth ] ) logger . debug ( "sending %s" , LazyStr ( message . dump_oneline ) ) self . transport . write ( message . as_string ( ) )
def tournament_name2number ( self , name ) : """Translate tournament name to tournament number . Args : name ( str ) : tournament name to translate Returns : number ( int ) : number of the tournament or ` None ` if unknown . Examples : > > > NumerAPI ( ) . tournament _ name2number ( ' delta ' ) > > > ...
tournaments = self . get_tournaments ( ) d = { t [ 'name' ] : t [ 'tournament' ] for t in tournaments } return d . get ( name , None )
def set_rest_notification ( self , url , hit_type_id ) : """Set a REST endpoint to recieve notifications about the HIT The newer AWS MTurk API does not support this feature , which means we cannot use boto3 here . Instead , we make the call manually after assembling a properly signed request ."""
ISO8601 = "%Y-%m-%dT%H:%M:%SZ" notification_version = "2006-05-05" API_version = "2014-08-15" data = { "AWSAccessKeyId" : self . aws_key , "HITTypeId" : hit_type_id , "Notification.1.Active" : "True" , "Notification.1.Destination" : url , "Notification.1.EventType.1" : "AssignmentAccepted" , "Notification.1.EventType.2...
def _toolkit_repr_print ( model , fields , section_titles , width = None ) : """Display a toolkit repr according to some simple rules . Parameters model : Turi Create model fields : List of lists of tuples Each tuple should be ( display _ name , field _ name ) , where field _ name can be a string or a _ p...
assert len ( section_titles ) == len ( fields ) , "The number of section titles ({0}) " . format ( len ( section_titles ) ) + "doesn't match the number of groups of fields, {0}." . format ( len ( fields ) ) out_fields = [ ( "Class" , model . __class__ . __name__ ) , "" ] # Record the max _ width so that if width is not...
def callback ( self , filename , lines , ** kwargs ) : """publishes lines one by one to the given topic"""
timestamp = self . get_timestamp ( ** kwargs ) if kwargs . get ( 'timestamp' , False ) : del kwargs [ 'timestamp' ] for line in lines : try : import warnings with warnings . catch_warnings ( ) : warnings . simplefilter ( 'error' ) m = self . format ( filename , line , tim...
def request_get_user ( self , user_ids ) -> dict : """Method to get users by ID , do not need authorization"""
method_params = { 'user_ids' : user_ids } response = self . session . send_method_request ( 'users.get' , method_params ) self . check_for_errors ( 'users.get' , method_params , response ) return response
def delete_consumer_group ( self , project , logstore , consumer_group ) : """Delete consumer group : type project : string : param project : project name : type logstore : string : param logstore : logstore name : type consumer _ group : string : param consumer _ group : consumer group name : return ...
headers = { "x-log-bodyrawsize" : '0' } params = { } resource = "/logstores/" + logstore + "/consumergroups/" + consumer_group ( resp , header ) = self . _send ( "DELETE" , project , None , resource , params , headers ) return DeleteConsumerGroupResponse ( header , resp )
def validate_plugin ( self , plugin_class , experimental = False ) : """Verifies that the plugin _ class should execute under this policy"""
valid_subclasses = [ IndependentPlugin ] + self . valid_subclasses if experimental : valid_subclasses += [ ExperimentalPlugin ] return any ( issubclass ( plugin_class , class_ ) for class_ in valid_subclasses )
def close ( self ) : """close an open connection"""
if not self . connected : return True self . _close ( ) self . connected = False self . log ( "Closed Connection {}" , self . connection_config . interface_name ) return True
def send_query ( self , ID , methodname , returnable , * args , ** kwargs ) : """将调用请求的ID , 方法名 , 参数包装为请求数据后编码为字节串发送出去 . Parameters : ID ( str ) : - 任务ID methodname ( str ) : - 要调用的方法名 returnable ( bool ) : - 是否要求返回结果 args ( Any ) : - 要调用的方法的位置参数 kwargs ( Any ) : - 要调用的方法的关键字参数 Return : ( bool ) : -...
query = self . _make_query ( ID , methodname , returnable , * args , ** kwargs ) self . _send_query ( query ) self . tasks [ ID ] = self . loop . create_future ( ) return True
def ssh_sa_ssh_server_mac ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) ssh_sa = ET . SubElement ( config , "ssh-sa" , xmlns = "urn:brocade.com:mgmt:brocade-sec-services" ) ssh = ET . SubElement ( ssh_sa , "ssh" ) server = ET . SubElement ( ssh , "server" ) mac = ET . SubElement ( server , "mac" ) mac . text = kwargs . pop ( 'mac' ) callback = kwargs . po...
def _parse_param ( key , val ) : """Parse the query param looking for sparse fields params Ensure the ` val ` or what will become the sparse fields is always an array . If the query param is not a sparse fields query param then return None . : param key : the query parameter key in the request ( left of =...
regex = re . compile ( r'fields\[([A-Za-z]+)\]' ) match = regex . match ( key ) if match : if not isinstance ( val , list ) : val = val . split ( ',' ) fields = [ field . lower ( ) for field in val ] rtype = match . groups ( ) [ 0 ] . lower ( ) return rtype , fields
def camel_to_snake ( name ) : """http : / / stackoverflow . com / questions / 1175208/ elegant - python - function - to - convert - camelcase - to - camel - case"""
s1 = FIRST_CAP_RE . sub ( r'\1_\2' , name ) return ALL_CAP_RE . sub ( r'\1_\2' , s1 ) . lower ( )
def join_url_params ( dic ) : """根据传入的键值对 , 拼接 url 后面 ? 的参数 , 比如 ? key1 = value1 & key2 = value2 : param : * dic : ( dict ) 参数键值对 : return : * result : ( string ) 拼接好的参数 举例如下 : : print ( ' - - - splice _ url _ params demo - - - ' ) dic1 = { ' key1 ' : ' value1 ' , ' key2 ' : ' value2 ' } print ( spl...
od = OrderedDict ( sorted ( dic . items ( ) ) ) url = '?' temp_str = urlencode ( od ) url = url + temp_str return url
def get_spherical_bounding_box ( lons , lats ) : """Given a collection of points find and return the bounding box , as a pair of longitudes and a pair of latitudes . Parameters define longitudes and latitudes of a point collection respectively in a form of lists or numpy arrays . : return : A tuple of fou...
north , south = numpy . max ( lats ) , numpy . min ( lats ) west , east = numpy . min ( lons ) , numpy . max ( lons ) assert ( - 180 <= west <= 180 ) and ( - 180 <= east <= 180 ) , ( west , east ) if get_longitudinal_extent ( west , east ) < 0 : # points are lying on both sides of the international date line # ( meridi...
def last_sleep_breakdown ( self ) : """Return durations of sleep stages for last complete session ."""
try : stages = self . intervals [ 1 ] [ 'stages' ] except KeyError : return None breakdown = { 'awake' : 0 , 'light' : 0 , 'deep' : 0 , 'rem' : 0 } for stage in stages : if stage [ 'stage' ] == 'awake' : breakdown [ 'awake' ] += stage [ 'duration' ] elif stage [ 'stage' ] == 'light' : br...
def matches ( self , spec ) : """Matches a specification against the current Plot ."""
if callable ( spec ) and not isinstance ( spec , type ) : return spec ( self ) elif isinstance ( spec , type ) : return isinstance ( self , spec ) else : raise ValueError ( "Matching specs have to be either a type or a callable." )
def delete ( self , record ) : """Delete a record . : param record : Record instance ."""
index , doc_type = self . record_to_index ( record ) return self . client . delete ( id = str ( record . id ) , index = index , doc_type = doc_type , )
def OnTimer ( self , event ) : """Update all frozen cells because of timer call"""
self . timer_updating = True shape = self . grid . code_array . shape [ : 2 ] selection = Selection ( [ ( 0 , 0 ) ] , [ ( shape ) ] , [ ] , [ ] , [ ] ) self . grid . actions . refresh_selected_frozen_cells ( selection ) self . grid . ForceRefresh ( )
def _extract_core_semantics ( self , docs ) : """Extracts core semantics for a list of documents , returning them along with a list of all the concepts represented ."""
all_concepts = [ ] doc_core_sems = [ ] for doc in docs : core_sems = self . _process_doc ( doc ) doc_core_sems . append ( core_sems ) all_concepts += [ con for con , weight in core_sems ] return doc_core_sems , list ( set ( all_concepts ) )
def _encrypt ( self , archive ) : """Encrypts the compressed archive using GPG . If encryption fails for any reason , it should be logged by sos but not cause execution to stop . The assumption is that the unencrypted archive would still be of use to the user , and / or that the end user has another means o...
arc_name = archive . replace ( "sosreport-" , "secured-sosreport-" ) arc_name += ".gpg" enc_cmd = "gpg --batch -o %s " % arc_name env = None if self . enc_opts [ "key" ] : # need to assume a trusted key here to be able to encrypt the # archive non - interactively enc_cmd += "--trust-model always -e -r %s " % self ....
def file_transfer_protocol_send ( self , target_network , target_system , target_component , payload , force_mavlink1 = False ) : '''File transfer message target _ network : Network ID ( 0 for broadcast ) ( uint8 _ t ) target _ system : System ID ( 0 for broadcast ) ( uint8 _ t ) target _ component : Componen...
return self . send ( self . file_transfer_protocol_encode ( target_network , target_system , target_component , payload ) , force_mavlink1 = force_mavlink1 )
def jsonstrlen ( self , name , path = Path . rootPath ( ) ) : """Returns the length of the string JSON value under ` ` path ` ` at key ` ` name ` `"""
return self . execute_command ( 'JSON.STRLEN' , name , str_path ( path ) )
def _schemaPrepareInsert ( self , store ) : """Prepare each attribute in my schema for insertion into a given store , either by upgrade or by creation . This makes sure all references point to this store and all relative paths point to this store ' s files directory ."""
for name , atr in self . getSchema ( ) : atr . prepareInsert ( self , store )
def maps_get_default_rules_output_rules_policyname ( self , ** kwargs ) : """Auto Generated Code"""
config = ET . Element ( "config" ) maps_get_default_rules = ET . Element ( "maps_get_default_rules" ) config = maps_get_default_rules output = ET . SubElement ( maps_get_default_rules , "output" ) rules = ET . SubElement ( output , "rules" ) policyname = ET . SubElement ( rules , "policyname" ) policyname . text = kwar...
def forward_lmm ( snps , pheno , K = None , covs = None , qvalues = False , threshold = 5e-8 , maxiter = 2 , test = 'lrt' , ** kw_args ) : """univariate fixed effects test with forward selection Args : snps : [ N x S ] SP . array of S SNPs for N individuals ( test SNPs ) pheno : [ N x 1 ] SP . array of 1 phen...
if K is None : K = SP . eye ( snps . shape [ 0 ] ) if covs is None : covs = SP . ones ( ( snps . shape [ 0 ] , 1 ) ) lm = simple_lmm ( snps , pheno , K = K , covs = covs , test = test , ** kw_args ) pvall = SP . zeros ( ( maxiter , snps . shape [ 1 ] ) ) pv = lm . getPv ( ) pvall [ 0 : 1 , : ] = pv imin = pv . ...
def create_widget ( self ) : """Create the underlying widget . A dialog is not a subclass of view , hence we don ' t set name as widget or children will try to use it as their parent ."""
d = self . declaration style = d . style or '@style/Widget.DeviceDefault.PopupMenu' self . window = PopupWindow ( self . get_context ( ) , None , 0 , style ) self . showing = False
def channel_close ( self , registry_address : PaymentNetworkID , token_address : TokenAddress , partner_address : Address , retry_timeout : NetworkTimeout = DEFAULT_RETRY_TIMEOUT , ) : """Close a channel opened with ` partner _ address ` for the given ` token _ address ` . Race condition , this can fail if chan...
self . channel_batch_close ( registry_address = registry_address , token_address = token_address , partner_addresses = [ partner_address ] , retry_timeout = retry_timeout , )
def right_click_high_equalarea ( self , event ) : """toggles between zoom and pan effects for the high equal area on right click Parameters event : the wx . MouseEvent that triggered the call of this function Alters high _ EA _ setting , toolbar4 setting"""
if event . LeftIsDown ( ) : return elif self . high_EA_setting == "Zoom" : self . high_EA_setting = "Pan" try : self . toolbar4 . pan ( 'off' ) except TypeError : pass elif self . high_EA_setting == "Pan" : self . high_EA_setting = "Zoom" try : self . toolbar4 . zoom ( ) ...
def check_container ( self , container_path , container_format = None , config_string = None ) : """Check whether the given container is well - formed . : param string container _ path : the path of the container to be checked : param container _ format : the format of the container : type container _ format ...
self . log ( [ u"Checking container '%s'" , container_path ] ) self . result = ValidatorResult ( ) if self . _are_safety_checks_disabled ( u"check_container" ) : return self . result if not ( gf . file_exists ( container_path ) or gf . directory_exists ( container_path ) ) : self . _failed ( u"Container '%s' no...
def _get_jwt_for_audience ( self , audience ) : """Get a JWT For a given audience . If there is already an existing , non - expired token in the cache for the audience , that token is used . Otherwise , a new token will be created . Args : audience ( str ) : The intended audience . Returns : bytes : T...
token , expiry = self . _cache . get ( audience , ( None , None ) ) if token is None or expiry < _helpers . utcnow ( ) : token , expiry = self . _make_jwt_for_audience ( audience ) self . _cache [ audience ] = token , expiry return token
def start_completion ( self , buffer_name = None , select_first = False , select_last = False , insert_common_part = False , complete_event = None ) : """Start asynchronous autocompletion of this buffer . ( This will do nothing if a previous completion was still in progress . )"""
buffer_name = buffer_name or self . current_buffer_name completer = self . _async_completers . get ( buffer_name ) if completer : completer ( select_first = select_first , select_last = select_last , insert_common_part = insert_common_part , complete_event = CompleteEvent ( completion_requested = True ) )
def create_ltp_package ( aleph_record , book_id , ebook_fn , data , url , urn_nbn = None ) : """Create LTP package as it is specified in specification v1.0 as I understand it . Args : aleph _ record ( str ) : XML containing full aleph record . book _ id ( str ) : UUID of the book . ebook _ fn ( str ) : Or...
root_dir , orig_dir , meta_dir = _create_package_hierarchy ( book_id = book_id ) # create original file original_fn = os . path . join ( orig_dir , fn_composers . original_fn ( book_id , ebook_fn ) ) with open ( original_fn , "wb" ) as f : f . write ( data ) # create metadata files metadata_filenames = [ ] records ...
def getVATAmount ( self ) : """Compute VAT Amount from the Price and system configured VAT"""
price , vat = self . getPrice ( ) , self . getVAT ( ) return float ( price ) * ( float ( vat ) / 100 )
def _set_traffic_class_exp_state ( self , v , load = False ) : """Setter method for traffic _ class _ exp _ state , mapped from YANG variable / traffic _ class _ exp _ state ( container ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ traffic _ class _ exp _ state is c...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = traffic_class_exp_state . traffic_class_exp_state , is_container = 'container' , presence = False , yang_name = "traffic-class-exp-state" , rest_name = "traffic-class-exp-state" , parent = self , path_helper = self . _path_he...
def do_round ( value , precision = 0 , method = 'common' ) : """Round the number to a given precision . The first parameter specifies the precision ( default is ` ` 0 ` ` ) , the second the rounding method : - ` ` ' common ' ` ` rounds either up or down - ` ` ' ceil ' ` ` always rounds up - ` ` ' floor ' ...
if not method in ( 'common' , 'ceil' , 'floor' ) : raise FilterArgumentError ( 'method must be common, ceil or floor' ) if method == 'common' : return round ( value , precision ) func = getattr ( math , method ) return func ( value * ( 10 ** precision ) ) / ( 10 ** precision )
def get_current_user ( self , ** params ) : """https : / / developers . coinbase . com / api / v2 # show - current - user"""
response = self . _get ( 'v2' , 'user' , params = params ) return self . _make_api_object ( response , CurrentUser )
def _process_pathway_disease ( self , limit ) : """We make a link between the pathway identifiers , and any diseases associated with them . Since we model diseases as processes , we make a triple saying that the pathway may be causally upstream of or within the disease process . : param limit : : return :...
LOG . info ( "Processing KEGG pathways to disease ids" ) if self . test_mode : graph = self . testgraph else : graph = self . graph line_counter = 0 raw = '/' . join ( ( self . rawdir , self . files [ 'pathway_disease' ] [ 'file' ] ) ) with open ( raw , 'r' , encoding = "iso-8859-1" ) as csvfile : filereade...
def get_Sb ( data ) : """returns vgp scatter for data set"""
Sb , N = 0. , 0. for rec in data : delta = 90. - abs ( rec [ 'vgp_lat' ] ) if rec [ 'average_k' ] != 0 : k = rec [ 'average_k' ] L = rec [ 'average_lat' ] * np . pi / 180. # latitude in radians Nsi = rec [ 'average_nn' ] K = old_div ( k , ( 2. * ( 1. + 3. * np . sin ( L )...
def datasets_update ( self , dataset_name , dataset_info ) : """Updates the Dataset info . Args : dataset _ name : the name of the dataset to update as a tuple of components . dataset _ info : the Dataset resource with updated fields ."""
url = Api . _ENDPOINT + ( Api . _DATASETS_PATH % dataset_name ) return datalab . utils . Http . request ( url , method = 'PUT' , data = dataset_info , credentials = self . _credentials )
def main ( ) : """App entry point"""
# Check python version if sys . version_info < ( 3 , 0 , 0 ) : sys . stderr . write ( 'You need python 3.0 or later to run this script!' + os . linesep ) exit ( 1 ) # Generate requires if platform . system ( ) == 'Windows' : requirements_file = 'windows.txt' else : requirements_file = 'base.txt' require...
def execute ( self , stmt , args ) : """Execute a statement , returning a cursor . For internal use only ."""
self . logger ( stmt , args ) with self . cursor ( ) as cursor : cursor . execute ( stmt , args ) return cursor
def cluster ( dupes , threshold = .5 , max_components = 30000 ) : '''Takes in a list of duplicate pairs and clusters them in to a list records that all refer to the same entity based on a given threshold Keyword arguments : threshold - - number betweent 0 and 1 ( default is . 5 ) . lowering the number wil...
distance_threshold = 1 - threshold dupe_sub_graphs = connected_components ( dupes , max_components ) for sub_graph in dupe_sub_graphs : if len ( sub_graph ) > 1 : i_to_id , condensed_distances , N = condensedDistance ( sub_graph ) linkage = fastcluster . linkage ( condensed_distances , method = 'cen...
def estimate_umbrella_sampling ( us_trajs , us_dtrajs , us_centers , us_force_constants , md_trajs = None , md_dtrajs = None , kT = None , maxiter = 10000 , maxerr = 1.0E-15 , save_convergence_info = 0 , estimator = 'wham' , lag = 1 , dt_traj = '1 step' , init = None , init_maxiter = 10000 , init_maxerr = 1.0E-8 , widt...
from . util import get_umbrella_sampling_data as _get_umbrella_sampling_data # sanity checks if estimator not in [ 'wham' , 'mbar' , 'dtram' , 'tram' ] : raise ValueError ( "unsupported estimator: %s" % estimator ) if not isinstance ( us_trajs , ( list , tuple ) ) : raise ValueError ( "The parameter us_trajs mu...
def get_api ( i ) : """Input : { ( path ) - path to module , if comes from access function or ( module _ uoa ) - if comes from CMD ( func ) - func for API ( out ) - output Output : { return - return code = 0 , if successful > 0 , if error ( error ) - error text if return > 0 title - title string...
p = i . get ( 'path' , '' ) f = i . get ( 'func' , '' ) o = i . get ( 'out' , '' ) muoa = i . get ( 'module_uoa' , '' ) t = '' # last function description ( if redirect to another API ) t_orig = '' # original function description l = 0 # API line a = '' # accumulated API if p == '' and muoa != '' : rx = load ( { 'm...
def _inputLine ( self , prompt , ** kwargs ) : 'Add prompt to bottom of screen and get line of input from user .'
self . inInput = True rstatuslen = self . drawRightStatus ( self . scr , self . sheets [ 0 ] ) attr = 0 promptlen = clipdraw ( self . scr , self . windowHeight - 1 , 0 , prompt , attr , w = self . windowWidth - rstatuslen - 1 ) ret = self . editText ( self . windowHeight - 1 , promptlen , self . windowWidth - promptlen...
def is_mass_balanced ( reaction ) : """Confirm that a reaction is mass balanced ."""
balance = defaultdict ( int ) for metabolite , coefficient in iteritems ( reaction . metabolites ) : if metabolite . elements is None or len ( metabolite . elements ) == 0 : return False for element , amount in iteritems ( metabolite . elements ) : balance [ element ] += coefficient * amount ret...
def match_file ( pattern , filename ) : '''The function will match a pattern in a file and return a rex object , which will have all the matches found in the file .'''
# Validate user data . if pattern is None : return None if os . stat ( filename ) . st_size == 0 : return None rexobj = REX ( pattern , filename ) rexpatstr = reformat_pattern ( pattern ) # print " rexpatstr : " , rexpatstr rexpat = re . compile ( rexpatstr ) rexobj . rex_patternstr = rexpatstr rexobj . rex_pat...
def remove ( self , key ) : """Clear a column value in the object . Note that this happens immediately : it does not wait for save ( ) to be called ."""
payload = { key : { '__op' : 'Delete' } } self . __class__ . PUT ( self . _absolute_url , ** payload ) del self . __dict__ [ key ]
def add_untagged_ok ( self , text : MaybeBytes , code : Optional [ ResponseCode ] = None ) -> None : """Add an untagged ` ` OK ` ` response . See Also : : meth : ` . add _ untagged ` , : class : ` ResponseOk ` Args : text : The response text . code : Optional response code ."""
response = ResponseOk ( b'*' , text , code ) self . add_untagged ( response )
def match ( self , location ) : """Check if the given location " matches " . : param location : The : class : ` Location ` object to try to match . : returns : : data : ` True ` if the two locations are on the same system and the : attr : ` directory ` can be matched as a filename pattern or a literal match...
if self . ssh_alias != location . ssh_alias : # Never match locations on other systems . return False elif self . have_wildcards : # Match filename patterns using fnmatch ( ) . return fnmatch . fnmatch ( location . directory , self . directory ) else : # Compare normalized directory pathnames . self = os . ...
def mtf_image_transformer_cifar_mp_4x ( ) : """Data parallel CIFAR parameters ."""
hparams = mtf_image_transformer_base_cifar ( ) hparams . mesh_shape = "model:4;batch:8" hparams . layout = "batch:batch;d_ff:model;heads:model" hparams . batch_size = 32 hparams . num_heads = 8 hparams . d_ff = 8192 return hparams
def sync_hue_db ( self , * servers ) : """Synchronize the Hue server ' s database . @ param servers : Name of Hue Server roles to synchronize . Not required starting with API v10. @ return : List of submitted commands ."""
actual_version = self . _get_resource_root ( ) . version if actual_version < 10 : return self . _role_cmd ( 'hueSyncDb' , servers ) return self . _cmd ( 'hueSyncDb' , api_version = 10 )
def _concat ( self , egdfs ) : """Concatenate evaluated group dataframes Parameters egdfs : iterable Evaluated dataframes Returns edata : pandas . DataFrame Evaluated data"""
egdfs = list ( egdfs ) edata = pd . concat ( egdfs , axis = 0 , ignore_index = False , copy = False ) # groupby can mixup the rows . We try to maintain the original # order , but we can only do that if the result has a one to # one relationship with the original one2one = ( self . keep_index and not any ( edata . index...
def file_resolve ( backend , filepath ) : """Mark a conflicted file as resolved , so that a merge can be completed"""
recipe = DKRecipeDisk . find_recipe_name ( ) if recipe is None : raise click . ClickException ( 'You must be in a recipe folder.' ) click . secho ( "%s - Resolving conflicts" % get_datetime ( ) ) for file_to_resolve in filepath : if not os . path . exists ( file_to_resolve ) : raise click . ClickExcepti...
def callback_url ( self , request ) : """the url to go back after the external service call : param request : contains the current session : type request : dict : rtype : string"""
service = self . service . split ( 'Service' ) [ 1 ] . lower ( ) return_to = '{service}_callback' . format ( service = service ) return '%s://%s%s' % ( request . scheme , request . get_host ( ) , reverse ( return_to ) )
def is_purrlog ( path ) : """Checks if path refers to a valid purrlog . Path must exist , and must contain either at least one directory called entry - YYYYMMDD - HHMMSS , or the file " dirconfig " """
if not os . path . isdir ( path ) : return False if list ( filter ( os . path . isdir , glob . glob ( os . path . join ( path , "entry-[0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9][0-9][0-9]" ) ) ) ) : return True return os . path . exists ( os . path . join ( path , "dirconfig" ) )
def loss ( args ) : """% prog loss a . b . i1 . blocks [ a . b - genomic . blast ] Extract likely gene loss candidates between genome a and b ."""
p = OptionParser ( loss . __doc__ ) p . add_option ( "--bed" , default = False , action = "store_true" , help = "Genomic BLAST is in bed format [default: %default]" ) p . add_option ( "--gdist" , default = 20 , type = "int" , help = "Gene distance [default: %default]" ) p . add_option ( "--bdist" , default = 20000 , ty...
def search_lxc_bridges ( ) : '''Search which bridges are potentially available as LXC bridges CLI Example : . . code - block : : bash salt ' * ' lxc . search _ lxc _ bridges'''
bridges = __context__ . get ( 'lxc.bridges' , None ) # either match not yet called or no bridges were found # to handle the case where lxc was not installed on the first # call if not bridges : bridges = set ( ) running_bridges = set ( ) bridges . add ( DEFAULT_BR ) try : output = __salt__ [ 'cm...
def get_raw_data ( self , times = 5 ) : """do some readings and aggregate them using the defined statistics function : param times : how many measures to aggregate : type times : int : return : the aggregate of the measured values : rtype float"""
self . _validate_measure_count ( times ) data_list = [ ] while len ( data_list ) < times : data = self . _read ( ) if data not in [ False , - 1 ] : data_list . append ( data ) return data_list
def read_in_config ( self ) : """Vyper will discover and load the configuration file from disk and key / value stores , searching in one of the defined paths ."""
log . info ( "Attempting to read in config file" ) if self . _get_config_type ( ) not in constants . SUPPORTED_EXTENSIONS : raise errors . UnsupportedConfigError ( self . _get_config_type ( ) ) with open ( self . _get_config_file ( ) ) as fp : f = fp . read ( ) self . _config = { } return self . _unmarshall_rea...
def extract_frame ( self ) : """Pulls one complete frame off the buffer and returns it . If there is no complete message in the buffer , returns None . Note that the buffer can contain more than once message . You should therefore call this method in a loop ( or use iterator functionality exposed by class )...
# ( mbytes , hbytes ) = self . _ find _ message _ bytes ( self . buffer ) # if not mbytes : # return None # msgdata = self . buffer [ : mbytes ] # self . buffer = self . buffer [ mbytes : ] # hdata = msgdata [ : hbytes ] # # Strip off any leading whitespace from headers ; this is necessary , because # # we do not ( any...