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def get_mean ( self , distribution_function ) : """Get the mean value for a distribution . If the distribution function is [ normal , uniform , choice , triangular ] the analytic value is being calculted . Else , the distribution is instantiated and then the mean is being calculated . : param distribution _ f...
name = self . distribution_name params = self . random_function_params if name == 'normal' : return params [ 0 ] if name == 'uniform' : return ( params [ 0 ] + params [ 1 ] ) / 2. if name == 'choice' : return params [ 0 ] . mean ( ) if name == 'triangular' : return ( params [ 0 ] + params [ 1 ] + params...
def guess_series ( input_string ) : u"""Tries to convert < input _ string > into a list of floats . Example : > > > guess _ series ( " 0.5 1.2 3.5 7.3 8 12.5 , 13.2 , " . . . " 15.0 , 14.2 , 11.8 , 6.1 , 1.9 " ) [0.5 , 1.2 , 3.5 , 7.3 , 8.0 , 12.5 , 13.2 , 15.0 , 14.2 , 11.8 , 6.1 , 1.9]"""
float_finder = re . compile ( "([-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)" ) return ( [ i for i in [ _convert_to_float ( j ) for j in float_finder . findall ( input_string ) # Remove entires we couldn ' t convert to a sensible value . ] if i is not None and not math . isnan ( i ) and not math . isinf ( i ) ] )
def put_key ( self , source , rel_path ) : '''Copy a file to the repository Args : source : Absolute path to the source file , or a file - like object rel _ path : path relative to the root of the repository'''
k = self . _get_boto_key ( rel_path ) try : k . set_contents_from_file ( source ) except AttributeError : if os . path . getsize ( source ) > 4.8 * 1024 * 1024 * 1024 : # Need to do multi - part uploads here k . set_contents_from_filename ( source ) else : k . set_contents_from_filename ( so...
def build_transitive_closure ( self , rel , tc_dict ) : """Build a transitive closure for a given relation in a given dict ."""
# Make a function with the righ argument structure rel_fun = lambda node , graph : rel ( node ) for x in self . graph . all_nodes ( ) : rel_closure = self . graph . transitiveClosure ( rel_fun , x ) xs = x . toPython ( ) for y in rel_closure : ys = y . toPython ( ) if xs == ys : ...
def get_vault_form_for_update ( self , vault_id ) : """Gets the vault form for updating an existing vault . A new vault form should be requested for each update transaction . arg : vault _ id ( osid . id . Id ) : the ` ` Id ` ` of the ` ` Vault ` ` return : ( osid . authorization . VaultForm ) - the vault f...
# Implemented from template for # osid . resource . BinAdminSession . get _ bin _ form _ for _ update _ template if self . _catalog_session is not None : return self . _catalog_session . get_catalog_form_for_update ( catalog_id = vault_id ) collection = JSONClientValidated ( 'authorization' , collection = 'Vault' ,...
def add ( self ) : """Add service definition to hierarchy ."""
yield self . client . create ( self . path ) yield self . client . create ( self . path + "/type" , self . name ) yield self . client . create ( self . path + "/state" ) yield self . client . create ( self . path + "/machines" , "[]" ) log . debug ( "registered service '%s' at %s." % ( self . name , self . path ) )
def flatten ( repertoire , big_endian = False ) : """Flatten a repertoire , removing empty dimensions . By default , the flattened repertoire is returned in little - endian order . Args : repertoire ( np . ndarray or None ) : A repertoire . Keyword Args : big _ endian ( boolean ) : If ` ` True ` ` , flatt...
if repertoire is None : return None order = 'C' if big_endian else 'F' # For efficiency , use ` ravel ` ( which returns a view of the array ) instead # of ` np . flatten ` ( which copies the whole array ) . return repertoire . squeeze ( ) . ravel ( order = order )
def get_symbol_dict ( self , voigt = True , zero_index = False , ** kwargs ) : """Creates a summary dict for tensor with associated symbol Args : voigt ( bool ) : whether to get symbol dict for voigt notation tensor , as opposed to full notation , defaults to true zero _ index ( bool ) : whether to set in...
d = { } if voigt : array = self . voigt else : array = self grouped = self . get_grouped_indices ( voigt = voigt , ** kwargs ) if zero_index : p = 0 else : p = 1 for indices in grouped : sym_string = self . symbol + '_' sym_string += '' . join ( [ str ( i + p ) for i in indices [ 0 ] ] ) val...
def cost_zerg_corrected ( self ) -> "Cost" : """This returns 25 for extractor and 200 for spawning pool instead of 75 and 250 respectively"""
if self . race == Race . Zerg and Attribute . Structure . value in self . attributes : # a = self . _ game _ data . units ( UnitTypeId . ZERGLING ) # print ( a ) # print ( vars ( a ) ) return Cost ( self . _proto . mineral_cost - 50 , self . _proto . vespene_cost , self . _proto . build_time ) else : return sel...
def setupModule ( self ) : """* The setupModule method * * * Return : * * - ` ` log ` ` - - a logger - ` ` dbConn ` ` - - a database connection to a test database ( details from yaml settings file ) - ` ` pathToInputDir ` ` - - path to modules own test input directory - ` ` pathToOutputDir ` ` - - path to...
import pymysql as ms # # VARIABLES # # logging . config . dictConfig ( yaml . load ( self . loggerConfig ) ) log = logging . getLogger ( __name__ ) connDict = yaml . load ( self . dbConfig ) dbConn = ms . connect ( host = connDict [ 'host' ] , user = connDict [ 'user' ] , passwd = connDict [ 'password' ] , db = connDic...
def _pairwise_chisq ( self ) : """Pairwise comparisons ( Chi - Square ) along axis , as numpy . ndarray . Returns a list of square and symmetric matrices of test statistics for the null hypothesis that each vector along * axis * is equal to each other ."""
return [ self . _chi_squared ( mr_subvar_proportions , self . _margin [ idx ] , self . _opposite_axis_margin [ idx ] / np . sum ( self . _opposite_axis_margin [ idx ] ) , ) for ( idx , mr_subvar_proportions ) in enumerate ( self . _proportions ) ]
def intersperse ( iterable , element ) : """Generator yielding all elements of ` iterable ` , but with ` element ` inserted between each two consecutive elements"""
iterable = iter ( iterable ) yield next ( iterable ) while True : next_from_iterable = next ( iterable ) yield element yield next_from_iterable
def _get_bookmark ( repo , name ) : '''Find the requested bookmark in the specified repo'''
try : return [ x for x in _all_bookmarks ( repo ) if x [ 0 ] == name ] [ 0 ] except IndexError : return False
def qindex2index ( index ) : """from a QIndex ( row / column coordinate system ) , get the buffer index of the byte"""
r = index . row ( ) c = index . column ( ) if c > 0x10 : return ( 0x10 * r ) + c - 0x11 else : return ( 0x10 * r ) + c
def layer_register ( log_shape = False , use_scope = True ) : """Args : log _ shape ( bool ) : log input / output shape of this layer use _ scope ( bool or None ) : Whether to call this layer with an extra first argument as variable scope . When set to None , it can be called either with or without the sc...
def wrapper ( func ) : @ wraps ( func ) def wrapped_func ( * args , ** kwargs ) : assert args [ 0 ] is not None , args if use_scope : name , inputs = args [ 0 ] , args [ 1 ] args = args [ 1 : ] # actual positional args used to call func assert isin...
def get_form ( formcls ) : """get form class according form class path or form class object"""
from uliweb . form import Form import inspect if inspect . isclass ( formcls ) and issubclass ( formcls , Form ) : return formcls elif isinstance ( formcls , ( str , unicode ) ) : path = settings . FORMS . get ( formcls ) if path : _cls = import_attr ( path ) return _cls else : r...
def taper ( path , length , final_width , final_distance , direction = None , layer = 0 , datatype = 0 ) : '''Linear tapers for the lazy . path : ` gdspy . Path ` to append the taper length : total length final _ width : final width of th taper direction : taper direction layer : GDSII layer number ( int ...
if layer . __class__ == datatype . __class__ == [ ] . __class__ : assert len ( layer ) == len ( datatype ) elif isinstance ( layer , int ) and isinstance ( datatype , int ) : layer = [ layer ] datatype = [ datatype ] else : raise ValueError ( 'Parameters layer and datatype must have the same ' 'type (ei...
def _mean_prediction ( self , mu , Y , h , t_z ) : """Creates a h - step ahead mean prediction Parameters mu : np . ndarray The past predicted values Y : np . ndarray The past data h : int How many steps ahead for the prediction t _ z : np . ndarray A vector of ( transformed ) latent variables R...
# Create arrays to iteratre over Y_exp = Y . copy ( ) # Loop over h time periods for t in range ( 0 , h ) : if self . ar != 0 : Y_exp_normalized = ( Y_exp [ - self . ar : ] [ : : - 1 ] - self . _norm_mean ) / self . _norm_std new_value = self . predict_new ( np . append ( 1.0 , Y_exp_normalized ) , ...
def _process_prb_strain_genotype_view ( self , limit = None ) : """Here we fetch the free text descriptions of the phenotype associations . Triples : < annot _ id > dc : description " description text " : param limit : : return :"""
line_counter = 0 if self . test_mode : graph = self . testgraph else : graph = self . graph LOG . info ( "Getting genotypes for strains" ) raw = '/' . join ( ( self . rawdir , 'prb_strain_genotype_view' ) ) with open ( raw , 'r' , encoding = "utf8" ) as csvfile : filereader = csv . reader ( csvfile , delimi...
def from_networkx ( cls , graph , weight = 'weight' ) : r"""Import a graph from NetworkX . Edge weights are retrieved as an edge attribute , under the name specified by the ` ` weight ` ` parameter . Signals are retrieved from node attributes , and stored in the : attr : ` signals ` dictionary under the att...
nx = _import_networkx ( ) from . graph import Graph adjacency = nx . to_scipy_sparse_matrix ( graph , weight = weight ) graph_pg = Graph ( adjacency ) for i , node in enumerate ( graph . nodes ( ) ) : for name in graph . nodes [ node ] . keys ( ) : try : signal = graph_pg . signals [ name ] ...
def targets_by_artifact_set ( self , targets ) : """Partitions the input targets by the sets of pinned artifacts they are managed by . : param collections . Iterable targets : the input targets ( typically just JarLibrary targets ) . : return : a mapping of PinnedJarArtifactSet - > list of targets . : rtype :...
sets_to_targets = defaultdict ( list ) for target in targets : sets_to_targets [ self . for_target ( target ) ] . append ( target ) return dict ( sets_to_targets )
def create_autosummary_file ( modules , opts ) : # type : ( List [ unicode ] , Any , unicode ) - > None """Create the module ' s index ."""
lines = [ 'API Reference' , '=============' , '' , '.. autosummary::' , ' :template: api_module.rst' , ' :toctree: {}' . format ( opts . destdir ) , '' , ] modules . sort ( ) for module in modules : lines . append ( ' {}' . format ( module ) ) lines . append ( '' ) fname = path . join ( opts . srcdir , '{}.rs...
def run_from_argv ( self , argv ) : """Overriden in order to access the command line arguments ."""
self . argv_string = ' ' . join ( argv ) super ( EmailNotificationCommand , self ) . run_from_argv ( argv )
def _initialize_pop ( self , pop_size ) : """Assigns indices to individuals in population ."""
self . toolbox . register ( "individual" , self . _generate ) self . toolbox . register ( "population" , tools . initRepeat , list , self . toolbox . individual ) self . population = self . toolbox . population ( n = pop_size ) self . assign_fitnesses ( self . population ) self . _model_count += len ( self . population...
def close ( self ) : '''Closes the CDF Class . 1 . If compression was set , this is where the compressed file is written . 2 . If a checksum is needed , this will place the checksum at the end of the file .'''
if self . compressed_file is None : with self . path . open ( 'rb+' ) as f : f . seek ( 0 , 2 ) eof = f . tell ( ) self . _update_offset_value ( f , self . gdr_head + 36 , 8 , eof ) if self . checksum : f . write ( self . _md5_compute ( f ) ) return with self . path ....
def configure ( self , cnf = { } , ** kw ) : """Configure resources of the widget . To get the list of options for this widget , call the method : meth : ` ~ TickScale . keys ` . See : meth : ` ~ TickScale . _ _ init _ _ ` for a description of the widget specific option ."""
kw . update ( cnf ) reinit = False if 'orient' in kw : if kw [ 'orient' ] == 'vertical' : self . _style_name = self . _style_name . replace ( 'Horizontal' , 'Vertical' ) if 'tickpos' not in kw : self . _tickpos = 'w' else : self . _style_name = self . _style_name . replace ( ...
def GetAlias ( session = None ) : """Return specified alias or if none the alias associated with the provided credentials . > > > clc . v2 . Account . GetAlias ( ) u ' BTDI '"""
if session is not None : return session [ 'alias' ] if not clc . ALIAS : clc . v2 . API . _Login ( ) return ( clc . ALIAS )
def run_dot ( dot ) : """Converts a graph in DOT format into an IPython displayable object ."""
global impl if impl is None : impl = guess_impl ( ) if impl == "dot" : return run_dot_dot ( dot ) elif impl == "js" : return run_dot_js ( dot ) else : raise ValueError ( "unknown implementation {}" . format ( impl ) )
def options ( argv = [ ] ) : """A helper function that returns a dictionary of the default key - values pairs"""
parser = HendrixOptionParser parsed_args = parser . parse_args ( argv ) return vars ( parsed_args [ 0 ] )
def error_unzip_helper ( values , func , func_kwargs ) : '''Splits [ ( x1 , y1 ) , ( x2 , y2 ) , . . . ] and gives to func'''
x_values = [ x for x , y in values ] y_values = [ y for x , y in values ] result = func ( x_values , y_values , ** func_kwargs ) if isinstance ( result , float ) : return result else : return result [ 0 ]
def filter ( self , * args , ** kwargs ) : """Adds WHERE arguments to the queryset , returning a new queryset # TODO : show examples : rtype : AbstractQuerySet"""
# add arguments to the where clause filters if len ( [ x for x in kwargs . values ( ) if x is None ] ) : raise CQLEngineException ( "None values on filter are not allowed" ) clone = copy . deepcopy ( self ) for operator in args : if not isinstance ( operator , WhereClause ) : raise QueryException ( '{} ...
def getPorts ( self ) : """acquire ports to be used by the SC2 client launched by this process"""
if self . ports : # no need to get ports if ports are al return self . ports if not self . _gotPorts : self . ports = [ portpicker . pick_unused_port ( ) , # game _ port portpicker . pick_unused_port ( ) , # base _ port portpicker . pick_unused_port ( ) , # shared _ port / init port ] self . _go...
def _extract_cause ( cls , exc_val ) : """Helper routine to extract nested cause ( if any ) ."""
# See : https : / / www . python . org / dev / peps / pep - 3134 / for why / what # these are . . . # ' _ _ cause _ _ ' attribute for explicitly chained exceptions # ' _ _ context _ _ ' attribute for implicitly chained exceptions # ' _ _ traceback _ _ ' attribute for the traceback # See : https : / / www . python . org...
def get_distance_function ( distance ) : """Returns the distance function from the string name provided : param distance : The string name of the distributions : return :"""
# If we provided distance function ourselves , use it if callable ( distance ) : return distance try : return _supported_distances_lookup ( ) [ distance ] except KeyError : raise KeyError ( 'Unsupported distance function {0!r}' . format ( distance . lower ( ) ) )
def _join_parameters ( base , nxt ) : """join parameters from the lhs to the rhs , if compatible ."""
if nxt is None : return base if isinstance ( base , set ) and isinstance ( nxt , set ) : return base | nxt else : return nxt
def error_response ( self , kwargs_lens , kwargs_ps ) : """returns the 1d array of the error estimate corresponding to the data response : return : 1d numpy array of response , 2d array of additonal errors ( e . g . point source uncertainties )"""
model_error = self . error_map ( kwargs_lens , kwargs_ps ) error_map_1d = self . ImageNumerics . image2array ( model_error ) C_D_response = self . ImageNumerics . C_D_response + error_map_1d return C_D_response , model_error
def complement_alleles ( self ) : """Complement the alleles of this variant . This will call this module ' s ` complement _ alleles ` function . Note that this will not create a new object , but modify the state of the current instance ."""
self . alleles = self . _encode_alleles ( [ complement_alleles ( i ) for i in self . alleles ] )
def _url_collapse_path ( path ) : """Given a URL path , remove extra ' / ' s and ' . ' path elements and collapse any ' . . ' references and returns a colllapsed path . Implements something akin to RFC - 2396 5.2 step 6 to parse relative paths . The utility of this function is limited to is _ cgi method and h...
# Similar to os . path . split ( os . path . normpath ( path ) ) but specific to URL # path semantics rather than local operating system semantics . path_parts = path . split ( '/' ) head_parts = [ ] for part in path_parts [ : - 1 ] : if part == '..' : head_parts . pop ( ) # IndexError if more ' . ....
def copy_data ( self , project , logstore , from_time , to_time = None , to_client = None , to_project = None , to_logstore = None , shard_list = None , batch_size = None , compress = None , new_topic = None , new_source = None ) : """copy data from one logstore to another one ( could be the same or in different re...
return copy_data ( self , project , logstore , from_time , to_time = to_time , to_client = to_client , to_project = to_project , to_logstore = to_logstore , shard_list = shard_list , batch_size = batch_size , compress = compress , new_topic = new_topic , new_source = new_source )
def _get_named_graph ( context ) : """Returns the named graph for this context ."""
if context is None : return None return models . NamedGraph . objects . get_or_create ( identifier = context . identifier ) [ 0 ]
def _split_response ( self , data ) : """_ split _ response : binary data - > { ' id ' : str , ' param ' : binary data , _ split _ response takes a data packet received from an XBee device and converts it into a dictionary . This dictionary provides names for each segment of binary data as specified in the ...
# Fetch the first byte , identify the packet # If the spec doesn ' t exist , raise exception packet_id = data [ 0 : 1 ] try : packet = self . api_responses [ packet_id ] except AttributeError : raise NotImplementedError ( "API response specifications could not " "be found; use a derived class which " "defines '...
def create_signed_url ( self , url , keypair_id , expire_time = None , valid_after_time = None , ip_address = None , policy_url = None , private_key_file = None , private_key_string = None ) : """Creates a signed CloudFront URL that is only valid within the specified parameters . : type url : str : param url ...
# Get the required parameters params = self . _create_signing_params ( url = url , keypair_id = keypair_id , expire_time = expire_time , valid_after_time = valid_after_time , ip_address = ip_address , policy_url = policy_url , private_key_file = private_key_file , private_key_string = private_key_string ) # combine the...
def nearest_point ( query , root_id , get_properties , dist_fun = euclidean_dist ) : """Find the point in the tree that minimizes the distance to the query . This method implements the nearest _ point query for any structure implementing a kd - tree . The only requirement is a function capable to extract the ...
k = len ( query ) dist = math . inf nearest_node_id = None # stack _ node : stack of identifiers to nodes within a region that # contains the query . # stack _ look : stack of identifiers to nodes within a region that # does not contains the query . stack_node = deque ( [ root_id ] ) stack_look = deque ( ) while stack_...
def get_TRM_star ( C , ptrms_vectors , start , end ) : """input : C , ptrms _ vectors , start , end output : TRM _ star , x _ star ( for delta _ pal statistic )"""
TRM_star = numpy . zeros ( [ len ( ptrms_vectors ) , 3 ] ) TRM_star [ 0 ] = [ 0. , 0. , 0. ] x_star = numpy . zeros ( len ( ptrms_vectors ) ) for num , vec in enumerate ( ptrms_vectors [ 1 : ] ) : TRM_star [ num + 1 ] = vec + C [ num ] # print ' vec ' , vec # print ' C ' , C [ num ] for num , trm in enumerate ( TRM...
def normalize ( vectors ) : """Normalize a matrix of row vectors to unit length . Contains a shortcut if there are no zero vectors in the matrix . If there are zero vectors , we do some indexing tricks to avoid dividing by 0. Parameters vectors : np . array The vectors to normalize . Returns vectors...
if np . ndim ( vectors ) == 1 : norm = np . linalg . norm ( vectors ) if norm == 0 : return np . zeros_like ( vectors ) return vectors / norm norm = np . linalg . norm ( vectors , axis = 1 ) if np . any ( norm == 0 ) : nonzero = norm > 0 result = np . zeros_like ( vectors ) n = norm [ no...
def get_token_details ( self , show_listing_details = False , show_inactive = False ) : """Function to fetch the available tokens available to trade on the Switcheo exchange . Execution of this function is as follows : : get _ token _ details ( ) get _ token _ details ( show _ listing _ details = True ) get...
api_params = { "show_listing_details" : show_listing_details , "show_inactive" : show_inactive } return self . request . get ( path = '/exchange/tokens' , params = api_params )
def get_port_bindings ( container_config , client_config ) : """Generates the input dictionary contents for the ` ` port _ bindings ` ` argument . : param container _ config : Container configuration . : type container _ config : dockermap . map . config . container . ContainerConfiguration : param client _ c...
port_bindings = { } if_ipv4 = client_config . interfaces if_ipv6 = client_config . interfaces_ipv6 for exposed_port , ex_port_bindings in itertools . groupby ( sorted ( container_config . exposes , key = _get_ex_port ) , _get_ex_port ) : bind_list = list ( _get_port_bindings ( ex_port_bindings , if_ipv4 , if_ipv6 )...
def path ( self ) : """Absolute path to the directory on the camera ' s filesystem ."""
if self . parent is None : return "/" else : return os . path . join ( self . parent . path , self . name )
def open_scene ( f , kwargs = None ) : """Opens the given JB _ File : param f : the file to open : type f : : class : ` jukeboxcore . filesys . JB _ File ` : param kwargs : keyword arguments for the command maya . cmds file . defaultflags that are always used : : open : ` ` True ` ` e . g . to force the...
defaultkwargs = { 'open' : True } if kwargs is None : kwargs = { } kwargs . update ( defaultkwargs ) fp = f . get_fullpath ( ) mayafile = cmds . file ( fp , ** kwargs ) msg = "Successfully opened file %s with arguments: %s" % ( fp , kwargs ) return ActionStatus ( ActionStatus . SUCCESS , msg , returnvalue = mayafil...
def focal ( self ) : """Get the focal length in pixels for the camera . Returns focal : ( 2 , ) float Focal length in pixels"""
if self . _focal is None : # calculate focal length from FOV focal = [ ( px / 2.0 ) / np . tan ( np . radians ( fov / 2.0 ) ) for px , fov in zip ( self . _resolution , self . fov ) ] # store as correct dtype self . _focal = np . asanyarray ( focal , dtype = np . float64 ) return self . _focal
def compile ( self , X , verbose = False ) : """method to validate and prepare data - dependent parameters Parameters X : array - like Input dataset verbose : bool whether to show warnings Returns None"""
for term in self . _terms : term . compile ( X , verbose = False ) if self . by is not None and self . by >= X . shape [ 1 ] : raise ValueError ( 'by variable requires feature {}, ' 'but X has only {} dimensions' . format ( self . by , X . shape [ 1 ] ) ) return self
def generate_listall_output ( lines , resources , aws_config , template , arguments , nodup = False ) : """Format and print the output of ListAll : param lines : : param resources : : param aws _ config : : param template : : param arguments : : param nodup : : return :"""
for line in lines : output = [ ] for resource in resources : current_path = resource . split ( '.' ) outline = line [ 1 ] for key in line [ 2 ] : outline = outline . replace ( '_KEY_(' + key + ')' , get_value_at ( aws_config [ 'services' ] , current_path , key , True ) ) ...
def manual ( cls , node , tval , ns = None ) : """Set the node ' s xsi : type attribute based on either I { value } ' s or the node text ' s class . Then adds the referenced prefix ( s ) to the node ' s prefix mapping . @ param node : XML node . @ type node : L { sax . element . Element } @ param tval : X...
xta = ":" . join ( ( Namespace . xsins [ 0 ] , "type" ) ) node . addPrefix ( Namespace . xsins [ 0 ] , Namespace . xsins [ 1 ] ) if ns is None : node . set ( xta , tval ) else : ns = cls . genprefix ( node , ns ) qname = ":" . join ( ( ns [ 0 ] , tval ) ) node . set ( xta , qname ) node . addPrefix ...
def disable_paging ( self , command = "terminal length 999" , delay_factor = 1 ) : """Disable paging default to a Cisco CLI method ."""
delay_factor = self . select_delay_factor ( delay_factor ) time . sleep ( delay_factor * 0.1 ) self . clear_buffer ( ) command = self . normalize_cmd ( command ) log . debug ( "In disable_paging" ) log . debug ( "Command: {0}" . format ( command ) ) self . write_channel ( command ) output = self . read_until_prompt ( )...
def _pipe_stdio ( cls , sock , stdin_isatty , stdout_isatty , stderr_isatty , handle_stdin ) : """Handles stdio redirection in the case of pipes and / or mixed pipes and ttys ."""
stdio_writers = ( ( ChunkType . STDOUT , stdout_isatty ) , ( ChunkType . STDERR , stderr_isatty ) ) types , ttys = zip ( * ( stdio_writers ) ) @ contextmanager def maybe_handle_stdin ( want ) : if want : # TODO : Launching this thread pre - fork to handle @ rule input currently results # in an unhandled SIGILL ...
def cira_stretch ( img , ** kwargs ) : """Logarithmic stretch adapted to human vision . Applicable only for visible channels ."""
LOG . debug ( "Applying the cira-stretch" ) def func ( band_data ) : log_root = np . log10 ( 0.0223 ) denom = ( 1.0 - log_root ) * 0.75 band_data *= 0.01 band_data = band_data . clip ( np . finfo ( float ) . eps ) band_data = xu . log10 ( band_data ) band_data -= log_root band_data /= denom ...
def get_logging_dir ( appname = 'default' ) : """The default log dir is in the system resource directory But the utool global cache allows for the user to override where the logs for a specific app should be stored . Returns : log _ dir _ realpath ( str ) : real path to logging directory"""
from utool . _internal import meta_util_cache from utool . _internal import meta_util_cplat from utool import util_cache if appname is None or appname == 'default' : appname = util_cache . get_default_appname ( ) resource_dpath = meta_util_cplat . get_resource_dir ( ) default = join ( resource_dpath , appname , 'lo...
def _filter_orientdb_simple_optional_edge ( query_metadata_table , optional_edge_location , inner_location_name ) : """Return an Expression that is False for rows that don ' t follow the @ optional specification . OrientDB does not filter correctly within optionals . Namely , a result where the optional edge DO...
inner_local_field = LocalField ( inner_location_name ) inner_location_existence = BinaryComposition ( u'!=' , inner_local_field , NullLiteral ) # The optional _ edge _ location here is actually referring to the edge field itself . # This is definitely non - standard , but required to get the proper semantics . # To get...
def logpdf ( self , mu ) : """Log PDF for Laplace prior Parameters mu : float Latent variable for which the prior is being formed over Returns - log ( p ( mu ) )"""
if self . transform is not None : mu = self . transform ( mu ) return ss . laplace . logpdf ( mu , loc = self . loc0 , scale = self . scale0 )
def import_from_json ( self , data ) : """Replace the current roster with the : meth : ` export _ as _ json ` - compatible dictionary in ` data ` . No events are fired during this activity . After this method completes , the whole roster contents are exchanged with the contents from ` data ` . Also , no dat...
self . version = data . get ( "ver" , None ) self . items . clear ( ) self . groups . clear ( ) for jid , data in data . get ( "items" , { } ) . items ( ) : jid = structs . JID . fromstr ( jid ) item = Item ( jid ) item . update_from_json ( data ) self . items [ jid ] = item for group in item . grou...
def _set_get_flexports ( self , v , load = False ) : """Setter method for get _ flexports , mapped from YANG variable / brocade _ hardware _ rpc / get _ flexports ( rpc ) If this variable is read - only ( config : false ) in the source YANG file , then _ set _ get _ flexports is considered as a private method...
if hasattr ( v , "_utype" ) : v = v . _utype ( v ) try : t = YANGDynClass ( v , base = get_flexports . get_flexports , is_leaf = True , yang_name = "get-flexports" , rest_name = "get-flexports" , parent = self , path_helper = self . _path_helper , extmethods = self . _extmethods , register_paths = False , exten...
def run ( cmd , env = None , return_object = False , block = True , cwd = None , verbose = False , nospin = False , spinner_name = None , combine_stderr = True , display_limit = 200 , write_to_stdout = True , ) : """Use ` subprocess . Popen ` to get the output of a command and decode it . : param list cmd : A lis...
_env = os . environ . copy ( ) if env : _env . update ( env ) if six . PY2 : fs_encode = partial ( to_bytes , encoding = locale_encoding ) _env = { fs_encode ( k ) : fs_encode ( v ) for k , v in _env . items ( ) } else : _env = { k : fs_str ( v ) for k , v in _env . items ( ) } if not spinner_name : ...
def ParseOptions ( self , options ) : """Parses tool specific options . Args : options ( argparse . Namespace ) : command line arguments . Raises : BadConfigOption : if the options are invalid ."""
# The extraction options are dependent on the data location . helpers_manager . ArgumentHelperManager . ParseOptions ( options , self , names = [ 'data_location' ] ) self . _ReadParserPresetsFromFile ( ) # The output modules options are dependent on the preferred language # and preferred time zone options . self . _Par...
def _get_text ( self , text ) : """Returns the text content of ` text ` , with all multi - character tokens replaced with a single character . Substitutions are recorded in self . _ substitutes . : param text : text to get content from : type text : ` Text ` : rtype : ` str `"""
tokens = text . get_tokens ( ) for i , token in enumerate ( tokens ) : if len ( token ) > 1 : char = chr ( self . _char_code ) substitute = self . _substitutes . setdefault ( token , char ) if substitute == char : self . _char_code += 1 tokens [ i ] = substitute return se...
def authenticate ( self , request ) : """Authenticate a client against all the backends configured in : attr : ` authentication ` ."""
for backend in self . authentication : client = backend ( ) . authenticate ( request ) if client is not None : return client return None
def wait_for_stable_cluster ( hosts , jolokia_port , jolokia_prefix , check_interval , check_count , unhealthy_time_limit , ) : """Block the caller until the cluster can be considered stable . : param hosts : list of brokers ip addresses : type hosts : list of strings : param jolokia _ port : HTTP port for Jo...
stable_counter = 0 max_checks = int ( math . ceil ( unhealthy_time_limit / check_interval ) ) for i in itertools . count ( ) : partitions , brokers = read_cluster_status ( hosts , jolokia_port , jolokia_prefix , ) if partitions or brokers : stable_counter = 0 else : stable_counter += 1 p...
def reduce ( self , values , inplace = True ) : """Reduces the distribution to the context of the given variable values . Let C ( X , Y ; K , h , g ) be some canonical form over X , Y where , k = [ [ K _ XX , K _ XY ] , ; h = [ [ h _ X ] , [ K _ YX , K _ YY ] ] [ h _ Y ] ] The formula for the obtained condi...
if not isinstance ( values , ( list , tuple , np . ndarray ) ) : raise TypeError ( "variables: Expected type list or array-like, " "got type {var_type}" . format ( var_type = type ( values ) ) ) if not all ( [ var in self . variables for var , value in values ] ) : raise ValueError ( "Variable not in scope." ) ...
def _generate_phrases ( self , sentences ) : """Method to generate contender phrases given the sentences of the text document . : param sentences : List of strings where each string represents a sentence which forms the text . : return : Set of string tuples where each tuple is a collection of words formi...
phrase_list = set ( ) # Create contender phrases from sentences . for sentence in sentences : word_list = [ word . lower ( ) for word in wordpunct_tokenize ( sentence ) ] phrase_list . update ( self . _get_phrase_list_from_words ( word_list ) ) return phrase_list
def sim_givenAdj ( self , Adj : np . array , model = 'line' ) : """Simulate data given only an adjacancy matrix and a model . The model is a bivariate funtional dependence . The adjacancy matrix needs to be acyclic . Parameters Adj adjacancy matrix of shape ( dim , dim ) . Returns Data array of shape ...
# nice examples examples = [ { 'func' : 'sawtooth' , 'gdist' : 'uniform' , 'sigma_glob' : 1.8 , 'sigma_noise' : 0.1 } ] # nr of samples n_samples = 100 # noise sigma_glob = 1.8 sigma_noise = 0.4 # coupling function / model func = self . funcs [ model ] # glob distribution sourcedist = 'uniform' # loop over source nodes...
def onlasso ( self , verts ) : """Main function to control the action of the lasso , allows user to draw on data image and adjust thematic map : param verts : the vertices selected by the lasso : return : nothin , but update the selection array so lassoed region now has the selected theme , redraws canvas"""
p = path . Path ( verts ) ind = p . contains_points ( self . pix , radius = 1 ) self . history . append ( self . selection_array . copy ( ) ) self . selection_array = self . updateArray ( self . selection_array , ind , self . solar_class_var . get ( ) ) self . mask . set_data ( self . selection_array ) self . fig . can...
def from_html_one ( html_code , ** kwargs ) : """Generates a PrettyTables from a string of HTML code which contains only a single < table >"""
tables = from_html ( html_code , ** kwargs ) try : assert len ( tables ) == 1 except AssertionError : raise Exception ( "More than one <table> in provided HTML code! Use from_html instead." ) return tables [ 0 ]
def list ( self , status = values . unset , iccid = values . unset , rate_plan = values . unset , e_id = values . unset , sim_registration_code = values . unset , limit = None , page_size = None ) : """Lists SimInstance records from the API as a list . Unlike stream ( ) , this operation is eager and will load ` l...
return list ( self . stream ( status = status , iccid = iccid , rate_plan = rate_plan , e_id = e_id , sim_registration_code = sim_registration_code , limit = limit , page_size = page_size , ) )
def zip ( self , other ) : """zips two sequences unifying the corresponding points ."""
return self . __class__ ( p1 % p2 for p1 , p2 in zip ( self , other ) )
def check_dir ( directory , newly_created_files ) : """Returns list of files that fail the check ."""
header_parse_failures = [ ] for root , dirs , files in os . walk ( directory ) : for f in files : if f . endswith ( '.py' ) and os . path . basename ( f ) != '__init__.py' : filename = os . path . join ( root , f ) try : check_header ( filename , filename in newly_cre...
def get ( path , objectType , user = None ) : '''Get the ACL of an object . Will filter by user if one is provided . Args : path : The path to the object objectType : The type of object ( FILE , DIRECTORY , REGISTRY ) user : A user name to filter by Returns ( dict ) : A dictionary containing the ACL CLI...
ret = { 'Path' : path , 'ACLs' : [ ] } sidRet = _getUserSid ( user ) if path and objectType : dc = daclConstants ( ) objectTypeBit = dc . getObjectTypeBit ( objectType ) path = dc . processPath ( path , objectTypeBit ) tdacl = _get_dacl ( path , objectTypeBit ) if tdacl : for counter in rang...
def EnumType ( enum_class , nested_type = _Undefined , ** kwargs ) : """Create and return a : class : ` EnumCDataType ` or : class : ` EnumElementType ` , depending on the type of ` nested _ type ` . If ` nested _ type ` is a : class : ` AbstractCDataType ` or omitted , a : class : ` EnumCDataType ` is constr...
if nested_type is _Undefined : return EnumCDataType ( enum_class , ** kwargs ) if isinstance ( nested_type , AbstractCDataType ) : return EnumCDataType ( enum_class , nested_type , ** kwargs ) else : return EnumElementType ( enum_class , nested_type , ** kwargs )
def luminance ( mycolour ) : r"""Determine ( relative ) luminance of a colour . Args : mycolour ( colourettu . Colour ) : a colour Luminance is a measure of how ' bright ' a colour is . Values are normalized so that the Luminance of White is 1 and the Luminance of Black is 0 . That is to say : . . code ...
colour_for_type = Colour ( ) if type ( mycolour ) is type ( colour_for_type ) : mycolour2 = mycolour else : try : mycolour2 = Colour ( mycolour ) except : raise TypeError ( "Must supply a colourettu.Colour" ) ( r1 , g1 , b1 ) = mycolour2 . normalized_rgb ( ) return math . sqrt ( 0.299 * math...
def verify_password ( self , user , password ) : """Returns ` ` True ` ` if the password is valid for the specified user . Additionally , the hashed password in the database is updated if the hashing algorithm happens to have changed . : param user : The user to verify against : param password : The plainte...
if self . use_double_hash ( user . password ) : verified = self . security . pwd_context . verify ( self . get_hmac ( password ) , user . password ) else : # Try with original password . verified = self . security . pwd_context . verify ( password , user . password ) if verified and self . security . pwd_contex...
def _GetUrl ( self , url_id , cache , database ) : """Retrieves an URL from a reference to an entry in the from _ visit table . Args : url _ id ( str ) : identifier of the visited URL . cache ( SQLiteCache ) : cache . database ( SQLiteDatabase ) : database . Returns : str : URL and hostname ."""
url_cache_results = cache . GetResults ( 'url' ) if not url_cache_results : result_set = database . Query ( self . URL_CACHE_QUERY ) cache . CacheQueryResults ( result_set , 'url' , 'id' , ( 'url' , 'rev_host' ) ) url_cache_results = cache . GetResults ( 'url' ) url , reverse_host = url_cache_results . get ...
def lab_to_xyz ( l , a = None , b = None , wref = _DEFAULT_WREF ) : """Convert the color from CIE L * a * b * to CIE 1931 XYZ . Parameters : The L component [ 0 . . . 100] The a component [ - 1 . . . 1] The a component [ - 1 . . . 1] : wref : The whitepoint reference , default is 2 ° D65. Returns : ...
if type ( l ) in [ list , tuple ] : l , a , b = l y = ( l + 16 ) / 116 x = ( a / 5.0 ) + y z = y - ( b / 2.0 ) return tuple ( ( ( ( v > 0.206893 ) and [ v ** 3 ] or [ ( v - _sixteenHundredsixteenth ) / 7.787 ] ) [ 0 ] * w for v , w in zip ( ( x , y , z ) , wref ) ) )
def add_email_addresses ( self , addresses = [ ] ) : """Add the email addresses in ` ` addresses ` ` to the authenticated user ' s account . : param list addresses : ( optional ) , email addresses to be added : returns : list of email addresses"""
json = [ ] if addresses : url = self . _build_url ( 'user' , 'emails' ) json = self . _json ( self . _post ( url , data = addresses ) , 201 ) return json
def wage ( return_X_y = True ) : """wage dataset Parameters return _ X _ y : bool , if True , returns a model - ready tuple of data ( X , y ) otherwise , returns a Pandas DataFrame Returns model - ready tuple of data ( X , y ) OR Pandas DataFrame Notes X contains the year , age and education of ...
# y is real # recommend LinearGAM wage = pd . read_csv ( PATH + '/wage.csv' , index_col = 0 ) if return_X_y : X = wage [ [ 'year' , 'age' , 'education' ] ] . values X [ : , - 1 ] = np . unique ( X [ : , - 1 ] , return_inverse = True ) [ 1 ] y = wage [ 'wage' ] . values return _clean_X_y ( X , y ) return...
def rfcformat ( dt , localtime = False ) : """Return the RFC822 - formatted representation of a datetime object . : param datetime dt : The datetime . : param bool localtime : If ` ` True ` ` , return the date relative to the local timezone instead of UTC , displaying the proper offset , e . g . " Sun , 10 ...
if not localtime : return formatdate ( timegm ( dt . utctimetuple ( ) ) ) else : return local_rfcformat ( dt )
def predict ( self , name , payload , params = None , retry = google . api_core . gapic_v1 . method . DEFAULT , timeout = google . api_core . gapic_v1 . method . DEFAULT , metadata = None , ) : """Perform an online prediction . The prediction result will be directly returned in the response . Available for follow...
# Wrap the transport method to add retry and timeout logic . if "predict" not in self . _inner_api_calls : self . _inner_api_calls [ "predict" ] = google . api_core . gapic_v1 . method . wrap_method ( self . transport . predict , default_retry = self . _method_configs [ "Predict" ] . retry , default_timeout = self ...
def _get_file_creation_time ( file_path ) : """Returns the creation time of the file at the specified file path in Microsoft FILETIME structure format ( https : / / msdn . microsoft . com / en - us / library / windows / desktop / ms724284 . aspx ) , formatted as a 8 - byte unsigned integer bytearray ."""
ctime = getctime ( file_path ) if ctime < - 11644473600 or ctime >= 253402300800 : raise FileTimeOutOfRangeException ( ctime ) creation_time_datetime = datetime . utcfromtimestamp ( ctime ) creation_time_epoch_offset = creation_time_datetime - datetime ( 1601 , 1 , 1 ) creation_time_secs_from_epoch = _convert_timed...
def _comparator_approximate ( filter_value , tested_value ) : """Tests if the filter value is nearly equal to the tested value . If the tested value is a string or an array of string , it compares their lower case forms"""
lower_filter_value = filter_value . lower ( ) if is_string ( tested_value ) : # Lower case comparison return _comparator_eq ( lower_filter_value , tested_value . lower ( ) ) elif hasattr ( tested_value , "__iter__" ) : # Extract a list of strings new_tested = [ value . lower ( ) for value in tested_value if is_...
def _fix_up_fields ( cls ) : """Add names to all of the Endpoint ' s Arguments . This method will get called on class declaration because of Endpoint ' s metaclass . The functionality is based on Google ' s NDB implementation ."""
cls . _arguments = dict ( ) if cls . __module__ == __name__ : # skip the classes in this file return for name in set ( dir ( cls ) ) : attr = getattr ( cls , name , None ) if isinstance ( attr , BaseArgument ) : if name . startswith ( '_' ) : raise TypeError ( "Endpoint argument %s canno...
def add_parameters ( self , template_file , in_file = None , pst_path = None ) : """add new parameters to a control file Parameters template _ file : str template file in _ file : str ( optional ) model input file . If None , template _ file . replace ( ' . tpl ' , ' ' ) is used pst _ path : str ( optio...
assert os . path . exists ( template_file ) , "template file '{0}' not found" . format ( template_file ) assert template_file != in_file # get the parameter names in the template file parnme = pst_utils . parse_tpl_file ( template_file ) # find " new " parameters that are not already in the control file new_parnme = [ ...
def StartsWith ( self , value ) : """Sets the type of the WHERE clause as " starts with " . Args : value : The value to be used in the WHERE condition . Returns : The query builder that this WHERE builder links to ."""
self . _awql = self . _CreateSingleValueCondition ( value , 'STARTS_WITH' ) return self . _query_builder
def _eap_check_config ( eap_config : Dict [ str , Any ] ) -> Dict [ str , Any ] : """Check the eap specific args , and replace values where needed . Similar to _ check _ configure _ args but for only EAP ."""
eap_type = eap_config . get ( 'eapType' ) for method in EAP_CONFIG_SHAPE [ 'options' ] : if method [ 'name' ] == eap_type : options = method [ 'options' ] break else : raise ConfigureArgsError ( 'EAP method {} is not valid' . format ( eap_type ) ) _eap_check_no_extra_args ( eap_config , options ...
def _get_heading_level ( self , element ) : """Returns the level of heading . : param element : The heading . : type element : hatemile . util . html . htmldomelement . HTMLDOMElement : return : The level of heading . : rtype : int"""
# pylint : disable = no - self - use tag = element . get_tag_name ( ) if tag == 'H1' : return 1 elif tag == 'H2' : return 2 elif tag == 'H3' : return 3 elif tag == 'H4' : return 4 elif tag == 'H5' : return 5 elif tag == 'H6' : return 6 return - 1
def validate_gps ( value ) : """Validate GPS value ."""
try : latitude , longitude , altitude = value . split ( ',' ) vol . Coerce ( float ) ( latitude ) vol . Coerce ( float ) ( longitude ) vol . Coerce ( float ) ( altitude ) except ( TypeError , ValueError , vol . Invalid ) : raise vol . Invalid ( 'GPS value should be of format "latitude,longitude,alti...
def keep_resample ( nkeep , X_train , y_train , X_test , y_test , attr_test , model_generator , metric , trained_model , random_state ) : """The model is revaluated for each test sample with the non - important features set to resample background values ."""
# why broken ? overwriting ? X_train , X_test = to_array ( X_train , X_test ) # how many features to mask assert X_train . shape [ 1 ] == X_test . shape [ 1 ] # how many samples to take nsamples = 100 # keep nkeep top features for each test explanation N , M = X_test . shape X_test_tmp = np . tile ( X_test , [ 1 , nsam...
def _get_linewise_report ( self ) : """Returns a report each line of which comprises a pair of an input line and an error . Unlike in the standard report , errors will appear as many times as they occur . Helper for the get _ report method ."""
d = defaultdict ( list ) # line : [ ] of errors for error , lines in self . errors . items ( ) : for line_num in lines : d [ line_num ] . append ( error ) return '\n' . join ( [ '{:>3} → {}' . format ( line , error . string ) for line in sorted ( d . keys ( ) ) for error in d [ line ] ] )
def topological_sort ( dag ) : """topological sort : param dag : directed acyclic graph : type dag : dict . . seealso : : ` Topographical Sorting < http : / / en . wikipedia . org / wiki / Topological _ sorting > ` _ , ` Directed Acyclic Graph ( DAG ) < https : / / en . wikipedia . org / wiki / Directed...
# find all edges of dag topsort = [ node for node , edge in dag . iteritems ( ) if not edge ] # loop through nodes until topologically sorted while len ( topsort ) < len ( dag ) : num_nodes = len ( topsort ) # number of nodes # unsorted nodes for node in dag . viewkeys ( ) - set ( topsort ) : # nodes wi...
def delete ( self ) : """Delete this key from mist . io : returns : An updated list of added keys"""
req = self . request ( self . mist_client . uri + '/keys/' + self . id ) req . delete ( ) self . mist_client . update_keys ( )
def save ( self , filename ) : """Save host keys into a file , in the format used by openssh . The order of keys in the file will be preserved when possible ( if these keys were loaded from a file originally ) . The single exception is that combined lines will be split into individual key lines , which is arg...
f = open ( filename , 'w' ) for e in self . _entries : line = e . to_line ( ) if line : f . write ( line ) f . close ( )
def clicked ( self , event ) : """Call if an element of this plottype is clicked . Implement in sub class ."""
group = event . artist . _mt_group indices = event . ind # double click only supported on 1.2 or later major , minor , _ = mpl_version . split ( '.' ) if ( int ( major ) , int ( minor ) ) < ( 1 , 2 ) or not event . mouseevent . dblclick : for i in indices : print ( self . groups [ group ] [ i ] . line_str )...
def retry ( num_attempts = 3 , exception_class = Exception , log = None , sleeptime = 1 ) : """> > > def fail ( ) : . . . runs [ 0 ] + = 1 . . . raise ValueError ( ) > > > runs = [ 0 ] ; retry ( sleeptime = 0 ) ( fail ) ( ) Traceback ( most recent call last ) : ValueError > > > runs > > > runs = [ 0 ]...
def decorator ( func ) : @ functools . wraps ( func ) def wrapper ( * args , ** kwargs ) : for i in range ( num_attempts ) : try : return func ( * args , ** kwargs ) except exception_class as e : if i == num_attempts - 1 : raise...
def basic_diff ( source1 , source2 , start = None , end = None ) : """Perform a basic diff between two equal - sized binary strings and return a list of ( offset , size ) tuples denoting the differences . source1 The first byte string source . source2 The second byte string source . start Start offset...
start = start if start is not None else 0 end = end if end is not None else min ( len ( source1 ) , len ( source2 ) ) end_point = min ( end , len ( source1 ) , len ( source2 ) ) pointer = start diff_start = None results = [ ] while pointer < end_point : if source1 [ pointer ] != source2 [ pointer ] : if dif...